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Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

 Odile Lecompte , Raymond Ripp , Jean-Claude Thierry , Dino Moras , Olivier Poch
Nucleic Acids Research, 2002, 30 (24), pp.5382-5390. ⟨10.1093/nar/gkf693⟩
Article dans une revue hal-04153028v1
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Controversies in modern evolutionary biology: the imperative for error detection and quality control.

 Francisco Prosdocimi , Benjamin Linard , Pierre Pontarotti , Olivier Poch , Julie Thompson
BMC Genomics, 2012, 13 (1), pp.5. ⟨10.1186/1471-2164-13-5⟩
Article dans une revue inserm-00682055v1
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Functional insights into the core-TFIIH from a comparative survey

 Florence Bedez , Benjamin Linard , Xavier Brochet , Raymond Ripp , Julie D. Thompson , et al.
Genomics, 2013, 101 (3), pp.178-186. ⟨10.1016/j.ygeno.2012.11.003⟩
Article dans une revue hal-01636894v1

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.

 Julie D Thompson , Stephen R Holbrook , Kazutaka Katoh , Patrice Koehl , Dino Moras , et al.
Nucleic Acids Research, 2005, 33 (13), pp.4164-71. ⟨10.1093/nar/gki735⟩
Article dans une revue hal-00187784v1

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

 Emmanuel Perrodou , Caroline Deshayes , Jean Muller , Christine Schaeffer , Alain van Dorsselaer , et al.
Nucleic Acids Research, 2006, 34 (Database issue), pp.D338-43. ⟨10.1093/nar/gkj060⟩
Article dans une revue hal-00188107v1
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Lrit3 Deficient Mouse (nob6): A Novel Model of Complete Congenital Stationary Night Blindness (cCSNB)

 Marion Neuillé , Said El Samieh , Elise Orhan , Christelle Michiels , Aline Antonio , et al.
PLoS ONE, 2014, 9 (3), pp.e90342. ⟨10.1371/journal.pone.0090342⟩
Article dans une revue hal-01368376v1

FP.05 From the Muscle Atlas to an AI-based diagnostic tool

 Corentin Meyer , Emmanuelle Lacene , Maud Beuvin , Evangelista Teresinha , Jocelyn Laporte , et al.
Neuromuscular Disorders, 2022, 32 (1), pp.S55. ⟨10.1016/j.nmd.2022.07.058⟩
Article dans une revue hal-04310915v1
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Insights into ciliary genes and evolution from multi-level phylogenetic profiling

 Yannis Nevers , Megana Prasad , Laetitia Poidevin , Kirsley Chennen , Alexis Allot , et al.
Molecular Biology and Evolution, 2017, 34 (8), pp.2016-2034. ⟨10.1093/molbev/msx146⟩
Article dans une revue hal-03618033v1
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Circular code motifs in the ribosome: a missing link in the evolution of translation?

 Gopal Dila , Raymond Ripp , Claudine Mayer , Olivier Poch , Christian Michel , et al.
RNA, 2019, 25 (12), pp.1714-1730. ⟨10.1261/rna.072074.119⟩
Article dans une revue hal-02381481v1
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Characterization of accessory genes in coronavirus genomes

 Christian Jean Michel , Claudine Mayer , Olivier Poch , Julie D. Thompson
Virology Journal, 2020, 17 (1), pp.131. ⟨10.1186/s12985-020-01402-1⟩
Article dans une revue hal-03464220v1

Time-resolved analysis of transcriptional events during SNAI1-triggered epithelial to mesenchymal transition.

 Guillaume Vetter , A. Le Béchec , Jean Muller , Arnaud H. Muller , M. Moes , et al.
Biochemical and Biophysical Research Communications, 2009, 385 (4), pp.485-91. ⟨10.1016/j.bbrc.2009.05.025⟩
Article dans une revue istex inserm-00420101v1

Ballast: blast post-processing based on locally conserved segments

 Frédéric Plewniak , Julie D. Thompson , Olivier Poch
Bioinformatics, 2000, 16 (9), pp.750-759. ⟨10.1093/bioinformatics/16.9.750⟩
Article dans une revue hal-04094321v1

Transcriptome analysis identifies genes with enriched expression in the mouse central extended amygdala.

 Jérôme A. J. Becker , Katia Befort , Clara Blad , Dominique Filliol , A. Ghate , et al.
Neuroscience, 2008, 156 (4), pp.950-65. ⟨10.1016/j.neuroscience.2008.07.070⟩
Article dans une revue inserm-00350728v1
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Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes

 Laurent Bianchetti , Yara Tarabay , Odile Lecompte , Roland H. Stote , Olivier Poch , et al.
BMC Evolutionary Biology, 2015, 15, pp.222. ⟨10.1186/s12862-015-0506-y⟩
Article dans une revue inserm-02057408v1

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

 Sébastien Gallien , Emmanuel Perrodou , Christine Carapito , Caroline Deshayes , Jean-Marc Reyrat , et al.
Genome Research, 2009, 19 (1), pp.128-35. ⟨10.1101/gr.081901.108⟩
Article dans une revue inserm-00357410v1

PromAn: an integrated knowledge-based web server dedicated to promoter analysis.

 Aurélie Lardenois , Frédéric Chalmel , Laurent Bianchetti , José-Alain Sahel , Thierry Léveillard , et al.
Nucleic Acids Research, 2006, 34 (Web Server issue), pp.W578-83. ⟨10.1093/nar/gkl193⟩
Article dans une revue hal-00188012v1

Sequence and comparative genomic analysis of actin-related proteins.

 Jean Muller , Yukako Oma , Laurent Vallar , Evelyne Friederich , Olivier Poch , et al.
Molecular Biology of the Cell, 2005, 16 (12), pp.5736-48. ⟨10.1091/mbc.E05-06-0508⟩
Article dans une revue hal-00187704v1

The hypoxic transcriptome of the retina: identification of factors with potential neuroprotective activity.

 Markus Thiersch , Wolfgang Raffelsberger , Enrico Frigg , Marijana Samardzija , Patricia Blank , et al.
Advances in Experimental Medicine and Biology, 2008, 613, pp.75-85
Article dans une revue hal-00282608v1

MACSIMS: multiple alignment of complete sequences information management system.

 Julie D Thompson , Arnaud H. Muller , Andrew Waterhouse , Jim Procter , Geoffrey J Barton , et al.
BMC Bioinformatics, 2006, 7, pp.318. ⟨10.1186/1471-2105-7-318⟩
Article dans une revue hal-00188166v1

Nonrandom variations in human cancer ESTs indicate that mRNA heterogeneity increases during carcinogenesis.

 Marie Brulliard , Dalia Lorphelin , Olivier Collignon , Walter Lorphelin , Benoit Thouvenot , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2007, 104 (18), pp.7522-7. ⟨10.1073/pnas.0611076104⟩
Article dans une revue hal-00190918v1

SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.

 Laurent Bianchetti , Yan Wu , Eric Guerin , Frédéric Plewniak , Olivier Poch
Nucleic Acids Research, 2007, 35 (18), pp.e122. ⟨10.1093/nar/gkm648⟩
Article dans une revue hal-00187823v1

Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.

 Caroline Deshayes , Emmanuel Perrodou , Daniel Euphrasie , Eric Frapy , Olivier Poch , et al.
BMC Evolutionary Biology, 2008, 8, pp.78. ⟨10.1186/1471-2148-8-78⟩
Article dans une revue hal-00283072v1
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EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data

 Benjamin Linard , Ngoc Hoan Nguyen , Francisco Prosdocimi , Olivier Poch , Julie D. Thompson
Evolutionary Bioinformatics, 2012, 8, pp.61-77. ⟨10.4137/EBO.S8814⟩
Article dans une revue hal-01636866v1

Detection and Characterisation of Mutations Responsible for Allele-Specific Protein Thermostabilities at the Mn-Superoxide Dismutase Gene in the Deep-Sea Hydrothermal Vent Polychaete Alvinella pompejana

 Matthieu Bruneaux , Jean Mary , Marie Verheye , Odile Lecompte , Olivier Poch , et al.
Journal of Molecular Evolution, 2013, 76 (5), pp.295-310. ⟨10.1007/s00239-013-9559-y⟩
Article dans une revue istex hal-01250910v1

Defining and characterizing protein surface using alpha shapes.

 Laurent-Philippe Albou , Benjamin Schwarz , Olivier Poch , Jean Marie Wurtz , Dino Moras
Proteins - Structure, Function and Bioinformatics, 2008, 76 (1), pp.1-12. ⟨10.1002/prot.22301⟩
Article dans une revue inserm-00384578v1
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OrthoInspector: comprehensive orthology analysis and visual exploration.

 Benjamin Linard , Julie Thompson , Olivier Poch , Odile Lecompte
BMC Bioinformatics, 2011, 12 (1), pp.11. ⟨10.1186/1471-2105-12-11⟩
Article dans une revue inserm-00663697v1
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A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).

 Carlos Bermejo-Das-Neves , Hoan-Ngoc Nguyen , Olivier Poch , Julie Thompson
BMC Bioinformatics, 2014, 15 (1), pp.111. ⟨10.1186/1471-2105-15-111⟩
Article dans une revue inserm-00988598v1
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Evolution of ice/dust mixtures upon sublimation of ice, implications for comets and larger icy objects

 Olivier Poch , Antoine Pommerol , Bernhard Jost , Zurine Yoldi , Nathalie Carrasco , et al.
European Planetary Science Congress 2017, Sep 2017, Riga, Latvia. pp.EPSC2017-334
Communication dans un congrès insu-01592339v1
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Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells

 Christo Kole , Naomi Berdugo , Corinne da Silva , Najate Aït-Ali , Géraldine Millet-Puel , et al.
PLoS ONE, 2016, 11 (3), pp.e0150758. ⟨10.1371/journal.pone.0150758⟩
Article dans une revue hal-01292283v1

Multiple alignment of complete sequences (MACS) in the post-genomic era

 Odile Lecompte , Julie Thompson , Frederic Plewniak , Jean-Claude Thierry , Olivier Poch
Gene, 2001, 270 (1-2), pp.17-30. ⟨10.1016/s0378-1119(01)00461-9⟩
Article dans une revue istex hal-04107023v1
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