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Circular code motifs in the ribosome: a missing link in the evolution of translation?

 Gopal Dila , Raymond Ripp , Claudine Mayer , Olivier Poch , Christian Michel , et al.
RNA, 2019, 25 (12), pp.1714-1730. ⟨10.1261/rna.072074.119⟩
Article dans une revue hal-02381481v1

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

 Odile Lecompte , Raymond Ripp , Jean-Claude Thierry , Dino Moras , Olivier Poch
Nucleic Acids Research, 2002, 30 (24), pp.5382-5390. ⟨10.1093/nar/gkf693⟩
Article dans une revue hal-04153028v1
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Functional insights into the core-TFIIH from a comparative survey

 Florence Bedez , Benjamin Linard , Xavier Brochet , Raymond Ripp , Julie D. Thompson , et al.
Genomics, 2013, 101 (3), pp.178-186. ⟨10.1016/j.ygeno.2012.11.003⟩
Article dans une revue hal-01636894v1
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Controversies in modern evolutionary biology: the imperative for error detection and quality control.

 Francisco Prosdocimi , Benjamin Linard , Pierre Pontarotti , Olivier Poch , Julie Thompson
BMC Genomics, 2012, 13 (1), pp.5. ⟨10.1186/1471-2164-13-5⟩
Article dans une revue inserm-00682055v1

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

 Emmanuel Perrodou , Caroline Deshayes , Jean Muller , Christine Schaeffer , Alain van Dorsselaer , et al.
Nucleic Acids Research, 2006, 34 (Database issue), pp.D338-43. ⟨10.1093/nar/gkj060⟩
Article dans une revue hal-00188107v1

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.

 Julie D Thompson , Stephen R Holbrook , Kazutaka Katoh , Patrice Koehl , Dino Moras , et al.
Nucleic Acids Research, 2005, 33 (13), pp.4164-71. ⟨10.1093/nar/gki735⟩
Article dans une revue hal-00187784v1
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Characterization of accessory genes in coronavirus genomes

 Christian Jean Michel , Claudine Mayer , Olivier Poch , Julie D. Thompson
Virology Journal, 2020, 17 (1), pp.131. ⟨10.1186/s12985-020-01402-1⟩
Article dans une revue hal-03464220v1

FP.05 From the Muscle Atlas to an AI-based diagnostic tool

 Corentin Meyer , Emmanuelle Lacene , Maud Beuvin , Evangelista Teresinha , Jocelyn Laporte , et al.
Neuromuscular Disorders, 2022, 32 (1), pp.S55. ⟨10.1016/j.nmd.2022.07.058⟩
Article dans une revue hal-04310915v1
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Lrit3 Deficient Mouse (nob6): A Novel Model of Complete Congenital Stationary Night Blindness (cCSNB)

 Marion Neuillé , Said El Samieh , Elise Orhan , Christelle Michiels , Aline Antonio , et al.
PLoS ONE, 2014, 9 (3), pp.e90342. ⟨10.1371/journal.pone.0090342⟩
Article dans une revue hal-01368376v1
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Insights into ciliary genes and evolution from multi-level phylogenetic profiling

 Yannis Nevers , Megana Prasad , Laetitia Poidevin , Kirsley Chennen , Alexis Allot , et al.
Molecular Biology and Evolution, 2017, 34 (8), pp.2016-2034. ⟨10.1093/molbev/msx146⟩
Article dans une revue hal-03618033v1

Time-resolved analysis of transcriptional events during SNAI1-triggered epithelial to mesenchymal transition.

 Guillaume Vetter , A. Le Béchec , Jean Muller , Arnaud H. Muller , M. Moes , et al.
Biochemical and Biophysical Research Communications, 2009, 385 (4), pp.485-91. ⟨10.1016/j.bbrc.2009.05.025⟩
Article dans une revue istex inserm-00420101v1

LEON: multiple aLignment Evaluation Of Neighbours

 Julie Thompson , Véronique Prigent , Olivier Poch
Nucleic Acids Research, 2004, 32 (4), pp.1298-1307. ⟨10.1093/nar/gkh294⟩
Article dans une revue hal-04130440v1

RASCAL: rapid scanning and correction of multiple sequence alignments

 Julie Thompson , J. C. Thierry , Olivier Poch
Bioinformatics, 2003, 19 (9), pp.1155-1161. ⟨10.1093/bioinformatics/btg133⟩
Article dans une revue hal-04151457v1

Blast sampling for structural and functional analyses.

 Anne Friedrich , Raymond Ripp , Nicolas B. Garnier , Emmanuel Bettler , Gilbert Deléage , et al.
BMC Bioinformatics, 2007, 8, pp.62. ⟨10.1186/1471-2105-8-62⟩
Article dans une revue hal-00190998v1

A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH.

 Nicolas Wicker , Annaïck Carles , Ian G Mills , Maija Wolf , Abhi Veerakumarasivam , et al.
BMC Genomics, 2007, 8, pp.84. ⟨10.1186/1471-2164-8-84⟩
Article dans une revue hal-00190961v1
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Nxnl2 splicing results in dual functions in neuronal cell survival and maintenance of cell integrity.

 Céline Jaillard , Aurélie Mouret , Marie-Laure Niepon , Emmanuelle Clérin , Ying Yang , et al.
Human Molecular Genetics, 2012, 21 (10), pp.2298-311. ⟨10.1093/hmg/dds050⟩
Article dans une revue inserm-00675213v1

Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection.

 Markus Thiersch , Wolfgang Raffelsberger , Rico Frigg , Marijana Samardzija , Andreas Wenzel , et al.
BMC Genomics, 2008, 9, pp.73. ⟨10.1186/1471-2164-9-73⟩
Article dans une revue hal-00282556v1
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A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

 Julie D. Thompson , Benjamin Linard , Odile Lecompte , Olivier Poch
PLoS ONE, 2011, 6 (3), pp.18093 - 18093. ⟨10.1371/journal.pone.0018093⟩
Article dans une revue hal-01636867v1
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Strategies for reliable exploitation of evolutionary concepts in high throughput biology.

 Anthony Levasseur , Pierre Pontarotti , Olivier Poch , Julie D. Thompson
Evolutionary Bioinformatics, 2008, 4, pp.121-37
Article dans une revue inserm-00368022v1

Multidimensional fitting for multivariate data analysis

 Claude Berge , Nicolas Froloff , Ravi Kiran Reddy Kalathur , Myriam Maumy , Olivier Poch , et al.
Journal of Computational Biology, 2010, 17 (5), pp.723-732. ⟨10.1089/cmb.2009.0126⟩
Article dans une revue hal-04051465v1

A comprehensive comparison of multiple sequence alignment programs

 Julie D Thompson , Frederic Plewniak , Olivier Poch
Nucleic Acids Research, 1999, 27 (13), pp.2682-2690. ⟨10.1093/nar/27.13.2682⟩
Article dans une revue hal-03989698v1

Released selective pressure on a structural domain gives new insights on the functional relaxation of mitochondrial aspartyl-tRNA synthetase

 Hagen Schwenzer , Gert C. Scheper , Nathalie Zorn , Luc Moulinier , Agnès Gaudry , et al.
Biochimie, 2014, 100, pp.18-26. ⟨10.1016/j.biochi.2013.09.027⟩
Article dans une revue hal-03041475v1

Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis

 Anne Cromer , Annaïck Carles , Régine Millon , Gitali Ganguli , Frédéric Chalmel , et al.
Oncogene, 2004, 23 (14), pp.2484-2498. ⟨10.1038/sj.onc.1207345⟩
Article dans une revue hal-04130430v1

Ubiquitin Receptor Protein UBASH3B Drives Aurora B Recruitment to Mitotic Microtubules

 Ksenia Krupina , Charlotte Kleiss , Thibaud Metzger , Sadek Fournane , Stéphane Schmucker , et al.
Developmental Cell, 2016, 36 (1), pp.63-78. ⟨10.1016/j.devcel.2015.12.017⟩
Article dans une revue hal-02371072v1
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Insights into metazoan evolution from Alvinella pompejana cDNAs.

 Nicolas Gagnière , Didier Jollivet , Isabelle Boutet , Yann Brélivet , Didier Busso , et al.
BMC Genomics, 2010, 11 (1), pp.634. ⟨10.1186/1471-2164-11-634⟩
Article dans une revue inserm-00617220v1
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OrthoInspector 3.0: open portal for comparative genomics

 Yannis Nevers , Arnaud Kress , Audrey Defosset , Raymond Ripp , Benjamin Linard , et al.
Nucleic Acids Research, 2019, 47 (D1), pp.D411-D418. ⟨10.1093/nar/gky1068⟩
Article dans une revue hal-01984857v1

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.

 Julie D Thompson , Patrice Koehl , Raymond Ripp , Olivier Poch
Proteins - Structure, Function and Bioinformatics, 2005, 61 (1), pp.127-36. ⟨10.1002/prot.20527⟩
Article dans une revue istex hal-00187785v1

Ballast: blast post-processing based on locally conserved segments

 Frédéric Plewniak , Julie D. Thompson , Olivier Poch
Bioinformatics, 2000, 16 (9), pp.750-759. ⟨10.1093/bioinformatics/16.9.750⟩
Article dans une revue hal-04094321v1

Transcriptome analysis identifies genes with enriched expression in the mouse central extended amygdala.

 Jérôme A. J. Becker , Katia Befort , Clara Blad , Dominique Filliol , A. Ghate , et al.
Neuroscience, 2008, 156 (4), pp.950-65. ⟨10.1016/j.neuroscience.2008.07.070⟩
Article dans une revue inserm-00350728v1
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Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes

 Laurent Bianchetti , Yara Tarabay , Odile Lecompte , Roland H. Stote , Olivier Poch , et al.
BMC Evolutionary Biology, 2015, 15, pp.222. ⟨10.1186/s12862-015-0506-y⟩
Article dans une revue inserm-02057408v1
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