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Number of documents

57

Publications Olivier LOUDET


Journal articles47 documents

  • Tom Van Dooren, Amanda Bortolini Silveira, Elodie Gilbault, José Jimenez-Gomez, Antoine Martin, et al.. Mild drought in the vegetative stage induces phenotypic, gene expression and DNA methylation plasticity in Arabidopsis but no transgenerational effects. Journal of Experimental Botany, Oxford University Press (OUP), 2020, 71 (12), pp.3588-3602. ⟨10.1093/jxb/eraa132⟩. ⟨hal-02535255⟩
  • Mathieu Hanemian, François Vasseur, Elodie Marchadier, Elodie Gilbault, Justine Bresson, et al.. Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-020-17896-w⟩. ⟨hal-02945319⟩
  • Elodie Marchadier, Mathieu Hanemian, Sebastien Tisne, Lien Bach, Christos Bazakos, et al.. The complex genetic architecture of shoot growth natural variation in Arabidopsis thaliana. PLoS Genetics, Public Library of Science, 2019, 15 (4), ⟨10.1371/journal.pgen.1007954⟩. ⟨hal-02629200⟩
  • Todd P. Michael, Florian Jupe, Felix Bemm, S. Timothy Motley, Justin P. Sandoval, et al.. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications, Nature Publishing Group, 2018, 9, pp.1-8. ⟨10.1038/s41467-018-03016-2⟩. ⟨hal-02626875⟩
  • Ning Tang, Zaigham Shahzad, Fabien Lonjon, Olivier Loudet, Fabienne Vailleau, et al.. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nature Communications, Nature Publishing Group, 2018, 9, ⟨10.1038/s41467-018-06430-8⟩. ⟨hal-01918090⟩
  • Gautier Viaud, Olivier Loudet, Paul-Henry Cournede. Leaf segmentation and tracking in arabidopsis thaliana combined to an organ-scale plant model for genotypic differentiation. Frontiers in Plant Science, Frontiers, 2017, 7, pp.1-14. ⟨10.3389/fpls.2016.02057⟩. ⟨hal-01602596⟩
  • Christos Bazakos, Mathieu Hanemian, Charlotte Trontin, José M. Jimenez-Gomez, Olivier Loudet. New strategies and tools in quantitative genetics: how to go from the phenotype to the genotype. Annual Review of Plant Biology, Annual Reviews, 2017, 68, pp.435-455. ⟨10.1146/annurev-arplant-042916-040820⟩. ⟨hal-01607849⟩
  • Astrid Agorio, Stéphanie Durand, Elisa Fiume, Cécile Brousse, Isabelle Gy, et al.. An Arabidopsis natural epiallele maintained by a feed-forward silencing loop between histone and DNA. PLoS Genetics, Public Library of Science, 2017, 13 (1), pp.1-23. ⟨10.1371/journal.pgen.1006551⟩. ⟨hal-01602603⟩
  • Harm Nijveen, Wilco Ligterink, Joost Keurentjes, Olivier Loudet, Jiao Long, et al.. AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana. Plant Journal, Wiley, 2017, 89 (6), pp.1225-1235. ⟨10.1111/tpj.13457⟩. ⟨hal-01532690⟩
  • Zaigham Shahzad, Matthieu Canut, Colette Tournaire-Roux, Alexandre Martiniere, Yann Boursiac, et al.. A potassium-dependent oxygen sensing pathway regulates plant root hydraulics. Cell, Elsevier, 2016, 167 (1), pp.87-98. ⟨10.1016/j.cell.2016.08.068⟩. ⟨hal-01417732⟩
  • Vincent Coustham, Daniela Loredan Vlad, Aurélie Deremetz, Isabelle Gy, Francisco Cubillos, et al.. SHOOT GROWTH1 Maintains Arabidopsis Epigenomes by Regulating IBM1. PLoS ONE, Public Library of Science, 2014, 9, online (1), Non paginé. ⟨10.1371/journal.pone.0084687⟩. ⟨hal-01019546⟩
  • Kirsten Bomblies, Olivier Loudet. Editorial Overview: Genome studies and molecular genetics: Genomic approaches to understanding evolution, development and the plant phenome. Current Opinion in Plant Biology, Elsevier, 2014, 18, pp.V - VI. ⟨10.1016/j.pbi.2014.03.005⟩. ⟨hal-01204051⟩
  • Charlotte Trontin, Seifollah Poormohammad Kiani, Jason A. Corwin, Kian Hematy, Jennifer Yansouni, et al.. A pair of receptor-like kinases is responsible for natural variation in shoot growth response to mannitol treatment in Arabidopsis thaliana. Plant Journal, Wiley, 2014, 78 (1), pp.121-133. ⟨10.1111/tpj.12454⟩. ⟨hal-01204062⟩
  • Francisco A. Cubillos, Oliver Stegle, Cécile Grondin, Matthieu Canut, Sebastien Tisne, et al.. Extensive [i]cis[/i]-regulatory variation robust to environmental perturbation in [i]Arabidopsis[/i]. The Plant cell, American Society of Plant Biologists (ASPB), 2014, 26 (11), pp.4298-4310. ⟨10.1105/tpc.114.130310⟩. ⟨hal-01204141⟩
  • Amanda Bortolini Silveira, Charlotte Trontin, Sandra Cortijo, Joan Barau, Luiz Eduardo Vieira del Bem, et al.. Extensive natural epigenetic variation at a [i]De Novo[/i] originated gene. PLoS Genetics, Public Library of Science, 2013, 9 (4), ⟨10.1371/journal.pgen.1003437⟩. ⟨hal-01190576⟩
  • Anna Koprivova, Marco Giovannetti, Patrycja Baraniecka, Bok-Rye Lee, Cécile Grondin, et al.. Natural Variation in the ATPS1 Isoform of ATP Sulfurylase Contributes to the Control of Sulfate Levels in Arabidopsis. Plant Physiology, American Society of Plant Biologists, 2013, 163 (3), pp.1133 - 1141. ⟨10.1104/pp.113.225748⟩. ⟨hal-01203997⟩
  • Sebastien Tisne, Yann Serrand, Lien Bach, Elodie Gilbault, Rachid Ben Ameur, et al.. Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant Journal, Wiley, 2013, 74 (3), pp.534 - 544. ⟨10.1111/tpj.12131⟩. ⟨hal-01004455⟩
  • Fabien Chardon, Magali Bedu, Fanny Calenge, Patrick a W Klemens, Lara Spinner, et al.. Leaf fructose content is controlled by the vacuolar transporter SWEET17 in Arabidopsis.. Current Biology - CB, Elsevier, 2013, 23 (8), pp.697-702. ⟨10.1016/j.cub.2013.03.021⟩. ⟨hal-00860481⟩
  • Jimmy Vandel, Brigitte Mangin, Matthieu Vignes, Damien Leroux, Olivier Loudet, et al.. Inférence de réseaux de régulation de gènes au travers de scores étendus dans les réseaux bayésiens. Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, Lavoisier, 2012, 26 (6), pp.679-708. ⟨10.3166/ria.26.679-708⟩. ⟨hal-01197611⟩
  • Christophe Pineau, Stéphanie Loubet, Cécile Lefoulon, Claude Chalies, Cécile Fizames, et al.. Natural Variation at the FRD3 MATE Transporter Locus Reveals Cross-Talk between Fe Homeostasis and Zn Tolerance in Arabidopsis thaliana. PLoS Genetics, Public Library of Science, 2012, 8 (12), pp.e1003120. ⟨10.1371/journal.pgen.1003120⟩. ⟨hal-02024149⟩
  • Sophie Jasinski, Alain Lecureuil, Martine Miquel, Olivier Loudet, Sylvain Raffaele, et al.. Natural variation in seed very long chain fatty acid content is controlled by a new isoform of KCS18 in [i]Arabidopsis thaliana[/i]. PLoS ONE, Public Library of Science, 2012, 7 (11), ⟨10.1371/journal.pone.0049261⟩. ⟨hal-01190708⟩
  • Jean-Marc Routaboul, Christian Dubos, Gilles Beck, Catherine Marques, Przemyslaw Bidzinski, et al.. Metabolite profiling and quantitative genetics of natural variation for flavonoids in Arabidopsis. Journal of Experimental Botany, Oxford University Press (OUP), 2012, 63 (10), pp.3749-3764. ⟨10.1093/jxb/ers067⟩. ⟨hal-01000367⟩
  • Seifollah Poormohammad Kiani, Charlotte Trontin, Matthew Andreatta, Matthieu Simon, Thierry Robert, et al.. Allelic heterogeneity and trade-off shape natural variation for response to soil micronutrient. PLoS Genetics, Public Library of Science, 2012, 8 (7), ⟨10.1371/journal.pgen.1002814⟩. ⟨hal-01190766⟩
  • Stéphanie Durand, Nicolas Bouche, Elsa Perez Strand, Olivier Loudet, Christine Camilleri. Rapid establishment of genetic incompatibility through natural epigenetic variation. Current Biology - CB, Elsevier, 2012, 22 (4), pp.326-331. ⟨10.1016/j.cub.2011.12.054⟩. ⟨hal-00999980⟩
  • Francisco Cubillos, Vincent Coustham, Olivier Loudet. Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants. Current Opinion in Plant Biology, Elsevier, 2012, 15 (2), pp.192 - 198. ⟨10.1016/j.pbi.2012.01.005⟩. ⟨hal-01004213⟩
  • Matthieu Simon, Adeline Simon, Frédéric Martins, Lucy Rosalie Botran, Sebastien Tisne, et al.. DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions. Plant Journal, Wiley, 2012, 69 (6), pp.1094-1101. ⟨10.1111/j.1365-313X.2011.04852.x⟩. ⟨hal-01000411⟩
  • Francisco Cubillos, Jennifer Yansouni, Ahmid Khalili, Sandrine Balzergue, Samira Elftieh, et al.. Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics, BioMed Central, 2012, 13, pp.1-12. ⟨10.1186/1471-2164-13-117⟩. ⟨hal-01189696⟩
  • Marie Bouteillé, Gaelle Rolland, Crispulo Balsera, Olivier Loudet, Bertrand Muller. Disentangling the Intertwined Genetic Bases of Root and Shoot Growth in Arabidopsis. PLoS ONE, Public Library of Science, 2012, 7 (2), ⟨10.1371/journal.pone.0032319⟩. ⟨hal-01190638⟩
  • Charlotte Trontin, Sebastien Tisne, Lien Bach, Olivier Loudet. What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?. Current Opinion in Plant Biology, Elsevier, 2011, 14 (3), pp.225-231. ⟨10.1016/j.pbi.2011.03.024⟩. ⟨hal-01000536⟩
  • Ilkka Kronholm, Olivier Loudet, Juliette de Meaux. Influence of mutation rate on estimators of genetic differentiation-lessons from Arabidopsis thaliana. BMC Genetics, BioMed Central, 2010, 11, pp.33. ⟨10.1186/1471-2156-11-88⟩. ⟨hal-01203876⟩
  • Daniela Loredan Vlad, Fabrice Rappaport, Matthieu Simon, Olivier Loudet. Gene transposition causing natural variation for growth in [i]Arabidopsis thaliana[/i]. PLoS Genetics, Public Library of Science, 2010, 6 (5), ⟨10.1371/journal.pgen.1000945⟩. ⟨hal-01203934⟩
  • David Bikard, Dhaval Patel, Claire Le Mette, Veronica Giorgi, Christine Camilleri, et al.. Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science, American Association for the Advancement of Science, 2009, 323, pp.623-626. ⟨10.1126/science.1165917⟩. ⟨hal-01203956⟩
  • Carole Kerdelhue, Christian Burban, Jean-Christophe Simon, Flavie Vanlerberghe-Masutti, Olivier Loudet. La spéciation, un processus toujours en cours. INRA Magazine, 2009, pp.X-XII. ⟨hal-01203975⟩
  • Ophélie Sicard, Olivier Loudet, Joost J. B. Keurentjes, Thierry Candresse, Olivier Le Gall, et al.. Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2008, 21 (2), pp.198-207. ⟨10.1094/MPMI-21-2-0198⟩. ⟨hal-02656693⟩
  • Olivier Loudet, Véra Saliba-Colombani, Christine Camilleri, Fanny Calenge, Virginie Gaudon, et al.. Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2. Nature Genetics, Nature Publishing Group, 2007, 39 (7), pp.896-900. ⟨10.1038/ng2050⟩. ⟨hal-02663317⟩
  • Audrey Macquet, Marie-Christine Ralet, Olivier Loudet, Jocelyne Kronenberger, Gregory Mouille, et al.. A naturally occurring mutation in an Arabidopsis accession affects a beta-D-galactosidase that increases the hydrophilic potential of rhamnogalacturonan I in seed mucilage. The Plant cell, American Society of Plant Biologists (ASPB), 2007, 19 (12), pp.3990-4006. ⟨10.1105/tpc.107050179⟩. ⟨hal-02660522⟩
  • Daniel J. Kliebenstein, Marilyn Al West, Hans van Leeuwen, Olivier Loudet, R.W. Doerge, et al.. Identification of QTLs controlling gene expression networks defined a priori. BMC Bioinformatics, BioMed Central, 2006, 7 (308), n.p. ⟨10.1186/1471-2105-7-308⟩. ⟨hal-02661319⟩
  • Celine Diaz, Véra Saliba-Colombani, Olivier Loudet, Pierre Belluomo, Laurence Moreau, et al.. Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana. Plant and Cell Physiology, Oxford University Press (OUP), 2006, 47 (1), pp.74-83. ⟨10.1093/pcp/pci225⟩. ⟨hal-02661380⟩
  • Matthieu Reymond, Sergio Svistoonoff, Olivier Loudet, Laurent Nussaume, Thierry Desnos. Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant, Cell and Environment, Wiley, 2006, 29 (1), pp.115-125. ⟨10.1111/j.1365-3040.2005.01405.x⟩. ⟨hal-02659203⟩
  • Gregory Mouille, Hanna Witucka-Wall, Marie-Pierre Bruyant, Olivier Loudet, Sandra Pelletier, et al.. Quantitative trait loci analysis of primary cell wall composition in arabidopsis. Plant Physiology, American Society of Plant Biologists, 2006, 141 (3), pp.1035-1044. ⟨10.1104/pp.106.079384⟩. ⟨hal-02659437⟩
  • Fanny Calenge, Véra Saliba-Colombani, Stéphanie Mahieu, Olivier Loudet, Francoise Daniel-Vedele, et al.. Natural variation for carbohydrate content in Arabidopsis. Interaction with complex traits dissected by quantitative genetics. Plant Physiology, American Society of Plant Biologists, 2006, 141 (4), pp.1630-1643. ⟨10.1104/pp.106.082396⟩. ⟨hal-02655658⟩
  • Olivier Loudet, Virginie Gaudon, Alain Trubuil, Francoise Daniel-Vedele. Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. TAG Theoretical and Applied Genetics, Springer Verlag, 2005, 110 (4), pp.742-753. ⟨10.1007/s00122-004-1900-9⟩. ⟨hal-02678339⟩
  • D.J. Wolyn, J.O. Borevitz, Olivier Loudet, C. Schwartz, J. Maloof, et al.. Light-response quantitative trait loci identified with composite interval and extreme array mapping in Arabidopsis thaliana. Genetics, Genetics Society of America, 2004, 167, pp.907-917. ⟨hal-02678846⟩
  • Olivier Loudet, Sylvain Chaillou, Patricia Mérigout, Joel Talbotec, Francoise Daniel Vedele. Quantitative trait loci analysis of nitrogen use efficiency in Arabidopsis. Plant Physiology, American Society of Plant Biologists, 2003, 131, pp.345-358. ⟨10.1104/pp.102.010785⟩. ⟨hal-02682611⟩
  • Olivier Loudet, Sylvain Chaillou, Annemarie Krapp, Francoise Daniel Vedele. Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana. Genetics, Genetics Society of America, 2003, 163, pp.711-722. ⟨hal-02676580⟩
  • Olivier Loudet, Sylvain Chaillou, Christine Camilleri, David Bouchez, Francoise Daniel Vedele. Bay-O X Shahdara recombinant inbred line population : a powerful tool for the genetic dissection of complex traits in Arabidopsis. TAG Theoretical and Applied Genetics, Springer Verlag, 2002, 104 (6-7), pp.1173-1184. ⟨hal-02678717⟩
  • E. Guingo, Olivier Loudet. The response of root/shoot partitioning and root morphology to light reduction in maize genotypes. Crop Science, Crop Science Society of America, 2001, 41 (2), pp.363-371. ⟨hal-02672556⟩

Book sections1 document

  • Olivier Loudet, Francoise Daniel Vedele. Dissection génétique d'un caractère complexe chez Arabidopsis: lignées recombinantes et recherche de QTL. La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5. ⟨hal-02829724⟩

Conference papers7 documents

  • Christophe Maurel, Zaigham Shahzad, Ning Tang, Colette Tournaire-Roux, Miguel Angel Rosales Villegas, et al.. Quantitative genetics dissection of root hydraulics uncovers novel pathways for plant adaptation to stresses. 10th Symposium of the International Society of Root Research, https://www.ortra.com/events/isrr10/Home.aspx, Jul 2018, Jérusalem, Israel. ⟨hal-02954548⟩
  • Christophe Maurel, Zaigham Shahzad, Colette Tournaire-Roux, Alexandre Martiniere, Yann Boursiac, et al.. Regulation of root water transport under flooding. XIX International Botanical Congress, 2017, Shenzhen, China. ⟨hal-01840973⟩
  • Christophe Maurel, Zaigham Shahzad, Ning Tang, Colette Tournaire-Roux, Alexandre Martiniere, et al.. Quantitative genetics analysis of root hydraulics uncovers novel pathways of plant adaptation to the environment. VIB Conference 'At the Forefront of Plant Research', 2017, Ghent, Belgium. ⟨hal-01840959⟩
  • Christophe Maurel, Zaigham Shahzad, Ning Tang, Colette Tournaire-Roux, Miguel Angel Rosales Villegas, et al.. Root hydraulics: a key trait in plant adaptation to stresses. 2nd Workshop on Plant Development & Drought Stress, Nov 2017, Pacific Grove, United States. ⟨hal-01840965⟩
  • Zaigham Shahzad, Matthieu Canut, Colette Tournaire-Roux, Alexandre Martiniere, Olivier Loudet, et al.. Hydraulic Conductivity of Root 1 controls potassium-dependent oxygen sensing to regulate root hydraulic. GARnet Natvar2016‘Natural variation as a tool for gene discovery and crop improvement’, Dec 2016, Cambridge, United Kingdom. ⟨hal-01594807⟩
  • Helen North, Marie-Christine Ralet, Susana Saez Aguayo, Joseph Tran, Dominique Poulain, et al.. Natural variation in the polysaccharide components of Arabidopsis seed coat epidermal cells. 13. Cell Wall Meeting, Institut National de Recherche Agronomique (INRA). UR Biopolymères, Interactions Assemblages (1268)., Jul 2013, Nantes, France. ⟨hal-02747713⟩
  • Ophélie Sicard, Olivier Loudet, Thierry Candresse, Olivier Le Gall, Frederic Revers, et al.. Recherche des déterminants génétiques de la plante hôte et du virus contrôlant l'apparition des symptômes dans le pathosystème Arabidopsis thaliana / Plum pox virus. 11. Rencontres de virologie végétale, Jan 2007, Aussois, France. ⟨hal-02753583⟩

Poster communications2 documents

  • Olivier Loudet. Decoding the complexity of quantitative natural variation and response to drought stress in plants. 26th International Conference on Arabidopsis Research, Jul 2015, Paris, France. ⟨hal-02998929⟩
  • Olivier Loudet. Decoding the complexity of quantitative natural variation and response to drought stress in Arabidopsis thaliana. SPS conference 2013, Jul 2013, Evry, France. ⟨hal-02998922⟩