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Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots

 Mélina Gallopin , Christine Drevet , Vanesa S. Garcia de la Torre , Sarah Jelassi , Marie Michel , et al.
2022
Pré-publication, Document de travail hal-03835818v1

A graph-based approach to classify A-minor motifs in RNA structures according to their structural context

 Coline Gianfrotta , Vladimir Reinharz , Olivier Lespinet , Dominique Barth , Alain Denise
ISMB: Intelligent Systems for Molecular Biology, Jul 2020, Virtual conference (Covid), Canada
Poster de conférence hal-04469616v1

A new method for improving the prediction and the functional annotation of ortholog groups

 Cécile Pereira , Alain Denise , Olivier Lespinet
Proc. ECCB'14, the 13th European Conference on Computational Biology, 2014, Strasbourg, France. Proc. ECCB'14, the 13th European Conference on Computational Biology, 2014
Poster de conférence hal-01098231v1

Genome dynamics of the Streptomyces genus

 Jean-Noël Lorenzi , Olivier Lespinet , Pierre Leblond , Annabelle Thibessard
ACTINO 2020 - Journées des actinobactéries, Dec 2020, Gif-sur-Yvette, France
Communication dans un congrès hal-03060006v1

Micro-time scale genome evolution among natural populations of Streptomyces

 Maxime Toussaint , Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Laurence Hotel , Olivier Lespinet , et al.
International Symposium of the Biology of Actinomycetes, May 2017, Jeju, South Korea
Communication dans un congrès hal-01625360v1
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A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data

 Paul Bastide , Charlotte Soneson , David Stern , Olivier Lespinet , Mélina Gallopin
Molecular Biology and Evolution, 2022, 40 (1), pp.1-14. ⟨10.1093/molbev/msac269⟩
Article dans une revue hal-04011083v1
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A meta-approach for improving the prediction and the functional annotation of ortholog groups

 Cécile Pereira , Alain Denise , Olivier Lespinet
BMC Genomics, 2014, ⟨10.1186/1471-2164-15-S6-S16⟩
Article dans une revue inserm-01229454v1

Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution

 Chris Papadopoulos , Isabelle Callebaut , Jean-Christophe Gelly , Isabelle Hatin , Olivier Namy , et al.
Genome Research, 2021, 31 (12), pp.2303-2315. ⟨10.1101/gr.275638.121⟩
Article dans une revue hal-03822836v1

Massive gene fluxes in bacterial population fuels adaptation to soil forest ecosystem

 Abdoul-Razak Tidjani , Jean-Noël Lorenzi , Olivier Lespinet , Cyril Bontemps , Pierre Leblond
Functional Ecology Conference Nancy 2018, Dec 2018, Nancy, France
Communication dans un congrès hal-02306656v1

Searching for novel specialized metabolite gene clusters, a new comparative genomics-based approach

 Cláudia M Vicente , Matthieu Barba , Drago Haas , Sylvie Lautru , Olivier Lespinet , et al.
Directing Biosynthesis V, Mar 2017, Warwick, United Kingdom
Poster de conférence hal-03042555v1

A graph-based approach to classify A-minor motifs in RNA structures according to their structural context

 Coline Gianfrotta , Vladimir Reinharz , Olivier Lespinet , Dominique Barth , Alain Denise
JOBIM 2020, Jun 2020, Montpellier, France. JOBIM 2020 Poster Proceedings, pp.34, 2020
Poster de conférence hal-04469625v1

Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework

 Paul Bastide , Charlotte Soneson , Olivier Lespinet , Mélina Gallopin
2022
Pré-publication, Document de travail hal-03837544v1
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CusProSe: a customizable protein annotation software with an application to the prediction of fungal secondary metabolism genes

 Leonor Oliveira , Nicolas Chevrollier , Jean-Félix Dallery , Richard O'Connell , Marc-Henri Lebrun , et al.
Scientific Reports, 2023, 13 (1), pp.1-13. ⟨10.1038/s41598-023-27813-y⟩
Article dans une revue hal-03975487v1
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Subtelomeres are fast-evolving regions of the Streptomyces linear chromosome

 Jean-Noël Lorenzi , Olivier Lespinet , Pierre Leblond , Annabelle Thibessard
Microbial Genomics, 2021, ⟨10.1099/mgen.0.000525⟩
Article dans une revue hal-03177250v2

Mining genomic islands with Synteruptor, a new strategy for identifying secondary metabolism gene clusters

 Drago Haas , Matthieu Barba , Cláudia M Vicente , Amélie Garenaux , Sárka Nezbedová , et al.
The 13th International Symposium on the Genetics of Industrial Microorganisms, Oct 2016, Wuhan, China
Communication dans un congrès hal-03042549v1
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Comparative genomics of emerging pathogens in the Candida glabrata clade.

 Toni Gabaldón , Tiphaine Martin , Marina Marcet-Houben , Pascal Durrens , Monique Bolotin-Fukuhara , et al.
BMC Genomics, 2013, 14 (1), pp.623. ⟨10.1186/1471-2164-14-623⟩
Article dans une revue inserm-00871184v1
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