CV Olivier Lepais

Olivier Lepais, Abdeldjalil Aissi, Errol Véla, Yassine Beghami. Joint analysis of microsatellites and flanking sequences enlightens complex demographic history of interspecific gene flow and vicariance in rear-edge oak populations. Heredity, Nature Publishing Group, 2022, ⟨10.1038/s41437-022-00550-0⟩. ⟨hal-03705508⟩

Michel Breuil, David Schikorski, Barbara Vuillaume, Ulrike Krauss, Jennifer Daltry, et al.. Iguana insularis (Iguanidae) from the southern Lesser Antilles: An endemic lineage endangered by hybridization. Zookeys, Pensoft, 2022, 1086, pp.137 - 161. ⟨10.3897/zookeys.1086.76079⟩. ⟨hal-03608735⟩

Mario Vallejo-Marín, Jannice Friedman, Alex D Twyford, Olivier Lepais, Stefanie M Ickert-Bond, et al.. Population genomic and historical analysis suggests a global invasion by bridgehead processes in Mimulus guttatus. Communications Biology, Nature Publishing Group, 2021, 4 (1), pp.1-12. ⟨10.1038/s42003-021-01795-x⟩. ⟨hal-03310344⟩

Abdeldjalil Aissi, Yassine Beghami, Olivier Lepais, Errol Véla. Analyse morphologique et taxonomique du complexe Quercus faginea (Fagaceae) en Algérie. Botany / Botanique, NRC Research Press, 2021, 99 (2), pp.99-113. ⟨10.1139/cjb-2020-0075⟩. ⟨hal-03146455⟩

Laura Taillebois, Stephen Sabatino, Aurélie Manicki, Françoise Daverat, David José Nachon, et al.. Variable outcomes of hybridization between declining Alosa alosa and Alosa fallax. Evolutionary Applications, Blackwell, 2020, 13 (4), pp.636-651. ⟨10.1111/eva.12889⟩. ⟨hal-02437628⟩

Olivier Lepais, Emilie Chancerel, Christophe Boury, Franck Salin, Aurélie Manicki, et al.. Fast sequence-based microsatellite genotyping development workflow. PeerJ, PeerJ, 2020, 8, pp.1-28. ⟨10.7717/peerj.9085⟩. ⟨hal-02936408⟩

Benoît Laurent, Clément Larue, Emilie Chancerel, Erwan Guichoux, Rémy J. Petit, et al.. Microhaplotype genotyping-by-sequencing of 98 highly polymorphic markers in three chestnut tree species. Conservation Genetics Resources, Springer, 2020, ⟨10.1007/s12686-020-01157-5⟩. ⟨hal-02882025⟩

Séverine Masson, Olivier Lepais, Aurélie Manicki, Etienne Prévost, Joëlle Chat. Disentangling individual movement between populations from effective dispersal in the facultative anadromous Salmo trutta L.. Ecology of Freshwater Fish, Consejo Superior de Investigaciones Científicas, 2018, 27 (1), pp.323-338. ⟨10.1111/eff.12349⟩. ⟨hal-01604159⟩

Vincent Veron, Lucie Marandel, Jingwei Liu, Emilio J. Vélez, Olivier Lepais, et al.. DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming. BMC Genomics, BioMed Central, 2018, 19 (1), ⟨10.1186/s12864-018-5048-4⟩. ⟨hal-01880453⟩

Cécile Fanny Emilie Bacles, Colin Bouchard, Frédéric Lange, Aurélie Manicki, Cédric Tentelier, et al.. Estimating the effective number of breeders from single parr samples for conservation monitoring of wild populations of Atlantic salmon Salmo salar. Journal of Fish Biology, Wiley, 2018, 92 (3), pp.699-726. ⟨10.1111/jfb.13537⟩. ⟨hal-01716615⟩

Cédric Tentelier, O. Barroso-Gomila, Olivier Lepais, Aurélie Manicki, I. Romero Garmendia, et al.. Testing mate choice and overdominance at MH in natural families of Atlantic salmon Salmo salar. Journal of Fish Biology, Wiley, 2017, 90 (4), pp.1644-1659. ⟨10.1111/jfb.13260⟩. ⟨hal-01606516⟩

Zoé Gauthey, Cédric Tentelier, Olivier Lepais, Arturo Elosegi, Laura Royer, et al.. With our powers combined: integrating behavioral and genetic data to estimate mating success and sexual selection. Rethinking Ecology, Pensoft, 2017, 2, pp.1-26. ⟨10.3897/rethinkingecology.2.14956⟩. ⟨hal-01588622⟩

Cédric Tentelier, Olivier Lepais, Nicolas Larranaga, Aurélie Manicki, Frédéric Lange, et al.. Sexual selection leads to a tenfold difference in reproductive success of alternative reproductive tactics in male Atlantic salmon. The Science of Nature Naturwissenschaften, Springer Verlag, 2016, 103 (5-6), 13 p. ⟨10.1007/s00114-016-1372-1⟩. ⟨hal-01901385⟩

Cédric Tentelier, Nicolas Larranaga, Olivier Lepais, Aurélie Manicki, Jacques Rives, et al.. Space use and its effects on reproductive success of anadromous Atlantic salmon. Canadian Journal of Fisheries and Aquatic Sciences, NRC Research Press, 2016, 73 (10), pp.1461-1471. ⟨10.1139/cjfas-2015-0518⟩. ⟨hal-01901387⟩

Barbara Vuillaume, Victorien Valette, Olivier Lepais, Frederic Grandjean, Michel Breuil. Genetic evidence of hybridization between the endangered native species Iguana delicatissima and the invasive Iguana iguana (Reptilia, Iguanidae) in the Lesser Antilles: management Implications. PLoS ONE, Public Library of Science, 2015, 10 (6), ⟨10.1371/journal.pone.0127575⟩. ⟨hal-01901355⟩

Zoé Gauthey, Marine Freychet, Aurélie Manicki, Alexandre Herman, Olivier Lepais, et al.. The concentration of plasma metabolites varies throughout reproduction and affects offspring number in wild brown trout (Salmo trutta). Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, Elsevier, 2015, 184, pp.90-96. ⟨10.1016/j.cbpa.2015.01.025⟩. ⟨hal-01901347⟩

Gaby Antonecchia, Paola Fortini, Olivier Lepais, Sophie Gerber, Patrick Legér, et al.. Genetic Structure of a Natural Oak Community in Central Italy: Evidence of Gene Flow between Three Sympatric White Oak Species (Quercus, Fagaceae). Annals of Forest Research, "Marin Drăcea" National Research-Development Institute in Forestry - Bucharest, Romania, 2015, 58 (2), pp.205-216-216. ⟨10.15287/afr.2015.415⟩. ⟨hal-02139663⟩

Olivier Lepais, Cécile Fanny Emilie Bacles. Two are better than one: combining landscape genomics and common gardens for detecting local adaptation in forest trees. Molecular Ecology, Wiley, 2014, 23 (19), pp.4671-4673. ⟨10.1111/mec.12906⟩. ⟨hal-02630547⟩

Olivier Lepais, Guy G. Roussel, Hubert François, Antoine Kremer, Sophie Gerber. Strength and variability of postmating reproductive isolating barriers between four European white oak species. Tree Genetics and Genomes, Springer Verlag, 2013, 9 (3), pp.841-853. ⟨10.1007/s11295-013-0602-3⟩. ⟨hal-02650757⟩

Olivier Lepais, Serge D Muller, Samia Ben Saad-Limam, Mohamed Benslama, Laïla Rhazi, et al.. High genetic diversity and distinctiveness of rear-edge climate relicts maintained by ancient tetraploidisation for Alnus glutinosa. PLoS ONE, Public Library of Science, 2013, 8 (9), 11 p. ⟨10.1371/journal.pone.0075029⟩. ⟨hal-02644159⟩

E.L. Rotheray, Olivier Lepais, A. Nater, M. Krützen, M. Greminger, et al.. Genetic variation and population decline of an endangered hoverfly Blera fallax (Diptera : Syrphidae). Conservation Genetics, Springer Verlag, 2012, 13 (5), pp.1283-1291. ⟨10.1007/s10592-012-0371-9⟩. ⟨hal-02651829⟩

B. Darvill, Olivier Lepais, L.C. Woodall, D. Goulson. Triploid bumblebees indicate a direct cost of inbreeding in fragmented populations. Molecular Ecology, Wiley, 2012, 21 (16), pp.3988-3995. ⟨10.1111/j.1365-294X.2012.05679.x⟩. ⟨hal-02651484⟩

D. Goulson, J. C. Kaden, Olivier Lepais, G. C. Lye, B. Darvill. Population structure, dispersal and colonization history of the garden bumblebee Bombus hortorum in the Western Isles of Scotland. Conservation Genetics, Springer Verlag, 2011, 12 (4), pp.867-879. ⟨10.1007/s10592-011-0190-4⟩. ⟨hal-02652253⟩

Erwan Guichoux, Lelia L. Lagache, Stefanie Wagner, Philippe Chaumeil, Patrick P. Léger, et al.. Current trends in microsatellite genotyping. Molecular Ecology Resources, Wiley/Blackwell, 2011, 11 (4), pp.591-611. ⟨10.1111/j.1755-0998.2011.03014.x⟩. ⟨hal-02652759⟩

Olivier Lepais, Cécile Fanny Emilie Bacles. Comparison of random and SSR-enriched shotgun pyrosequencing for microsatellite discovery and single multiplex PCR optimization in Acacia harpophylla F. Muell. Ex Benth. Molecular Ecology Resources, Wiley/Blackwell, 2011, 11 (4), pp.711-724. ⟨10.1111/j.1755-0998.2011.03002.x⟩. ⟨hal-02644253⟩

Olivier Lepais, Cécile Fanny Emilie Bacles. De Novo Discovery and Multiplexed Amplification of Microsatellite Markers for Black Alder (Alnus glutinosa) and Related Species Using SSR-Enriched Shotgun Pyrosequencing. Journal of Heredity, Oxford University Press (OUP), 2011, 102 (5), pp.627-632. ⟨10.1093/jhered/esr062⟩. ⟨hal-02649970⟩

G. C. Lye, Olivier Lepais, D. Goulson. Reconstructing demographic events from population genetic data: the introduction of bumblebees to New Zealand. Molecular Ecology, Wiley, 2011, 20 (14), pp.2888-2900. ⟨10.1111/j.1365-294X.2011.05139.x⟩. ⟨hal-02649972⟩

Olivier Lepais, Sophie Gerber. Reproductive patterns shape introgression dynamics and species succession within the european white oak species complex. Evolution - International Journal of Organic Evolution, Wiley, 2011, 65 (1), pp.156-170. ⟨10.1111/j.1558-5646.2010.01101.x⟩. ⟨hal-02651325⟩

Olivier Lepais, Ben Darvill, Stéphanie O’connor, Juliet L. Osborne, Roy A. Sanderson, et al.. Estimation of bumblebee queen dispersal distances using sibship reconstruction method. Molecular Ecology, Wiley, 2010, 19 (4), pp.819-831. ⟨10.1111/j.1365-294X.2009.04500.x⟩. ⟨hal-02661910⟩

B. Darvill, S. O’connor, G. C. Lye, J. Waters, Olivier Lepais, et al.. Cryptic differences in dispersal lead to differential sensitivity to habitat fragmentation in two bumblebee species. Molecular Ecology, Wiley, 2010, 19 (1), pp.53-63. ⟨10.1111/j.1365-294X.2009.04423.x⟩. ⟨hal-02666965⟩

Dave Goulson, Olivier Lepais, Stéphanie O’connor, Juliet L. Osborne, Roy A. Sanderson, et al.. Effects of land use at a landscape scale on bumblebee nest density and survival. Journal of Applied Ecology, Wiley, 2010, 47 (6), pp.1207-1215. ⟨10.1111/j.1365-2664.2010.01872.x⟩. ⟨hal-02666152⟩

Vincenzo Viscosi, Olivier Lepais, Sophie Gerber, P. Fortini. Leaf morphological analyses in four European oak species (Quercus) and their hybrids: A comparison of traditional and geometric morphometric methods. Plant Biosystems, Taylor & Francis, 2009, 143 (3), pp.564-574. ⟨10.1080/11263500902723129⟩. ⟨hal-02668459⟩

Olivier Lepais, Remy R. Petit, Erwan Guichoux, J. E. Lavabre, Florian Alberto, et al.. Species relative abundance and direction of introgression in oaks. Molecular Ecology, Wiley, 2009, 18 (10), pp.2228 - 2242. ⟨10.1111/j.1365-294X.2009.04137.x⟩. ⟨hal-02665530⟩

Imen Rekik, Amelia Salimonti, Sophie Gerber, Olivier Lepais, Enzo Perri, et al.. Characterization and identification of tunisian olive tree varieties by microsatellite markers. HortScience, American Society for Horticultural Science, 2008, 43 (5), pp.1371-1376. ⟨hal-02662168⟩

Anass Terrab, Arndt Hampe, Olivier Lepais, Salvador Talavera, Errol Vela, et al.. Phylogeography of north african atlas cedar (cedrus atlantica, pinaceae): combined molecular and fossil data reveal a complex quaternary history. American Journal of Botany, Botanical Society of America, 2008, 95 (10), pp.1262-1269. ⟨10.3732/ajb.0800010⟩. ⟨hal-02660991⟩

Olivier Lepais, Valérie V. Léger, Sophie Gerber. High throughput microsatellite genotyping in oak species. Silvae Genetica, Walter De Gruyter, 2006, 55 (4-5), pp.238-240. ⟨hal-02661668⟩

Olivier Lepais, Laura Taillebois. Hybridation entre l’alose vraie et la grande alose sur la façade Atlantique Française : causes et conséquences pour leur conservation. Réunion du réseau de génétique du Département EFPA, May 2019, Montpellier, France. ⟨hal-02791213⟩

Olivier Lepais, Eric Petit. NGS : New-genotyping strategies. Réunion du réseau de génétique du Département EFPA, May 2019, Montpellier, France. ⟨hal-02791697⟩

Olivier Lepais. Approches moléculaires pour étudier l'effet de l'utilisation des terres d'un paysage agricole sur les populations de bourdons. Rencontre d'écologie des paysages, Nov 2019, Bordeaux, France. ⟨hal-02791503⟩

Olivier Lepais, Cécile Fanny Emilie Bacles, Frédéric Lange, Aurélie Manicki. Estimation du nombre de reproducteurs efficaces : un nouvel indicateur de l’état des populations. Journée Scientifique et technique du Pôle Migrateurs INRA AFB, Jun 2019, Paris, France. 12 p. ⟨hal-02791159⟩

Olivier Lepais, Christophe Boury, Emilie Chancerel, Aurélie Manicki, Franck Salin, et al.. Génotypage de microsatellites par séquençage : aspects méthodologiques et analytiques. Réunion du réseau de génétique du Département EFPA, May 2018, Avignon, France. ⟨hal-02791698⟩

Olivier Lepais, Frédéric Lange, Aurélie Manicki, Cécile Fanny Emilie Bacles. Cost-efficient estimation of effective population size from single parr sample for Atlantic salmon conservation monitoring of rear-edge populations in southern France. Fisheries Society of the British Isles Annual Symposium, Jul 2017, Exeter, United Kingdom. ⟨hal-01605318⟩

Cécile Fanny Emilie Bacles, Frédéric Lange, Aurélie Manicki, Olivier Lepais. Estimation du nombre de reproducteurs efficaces (NombReEff) : un nouvel indicateur de l'état des populations. Réunion du réseau de génétique du Département EFPA, Jun 2017, Orléans, France. 16 diapos. ⟨hal-01603135⟩

Charlotte Urien, Joëlle Chat, Aurélie Manicki, Christophe Boury, Franck Salin, et al.. Développement rapide de marqueurs SNP pour l’aide à la gestion de la truite commune (Salmo trutta L.) dans le bassin de l’Adour. 38. Réunion Annuelle du Groupe d'Etude de Biologie et Génétique des Populations, Jun 2017, Paris Saclay, France. ⟨hal-01603236⟩

Olivier Lepais. Planification d'expérience RADseq : approche par simulation.. Approches RADseq pour l'étude de la biodiversité, Nov 2016, PARIS, France. ⟨hal-02139660⟩

Olivier Lepais. Planification d’expérience RADseq : approche par simulation.. Approches RADseq pour l'étude de la biodiversité, Groupement de Recherche Génomique Environnementale (GDR3692). FRA., Nov 2016, Paris, France. ⟨hal-02799371⟩

Séverine Masson, Joëlle Chat, Aurélie Manicki, Francois Gueraud, Jacques Rives, et al.. Estimating movement and effective dispersal in a partially migratory fish. Annual Meeting of the Ecological Genetics Group, Apr 2016, Aberystwyth, United Kingdom. ⟨hal-01608138⟩

Olivier Lepais, Stéphane Glise, Francois Gueraud, Jacques Rives, Aurélie Manicki, et al.. Génétique de la maturation chez le saumon Atlantique. Réunion du réseau de génétique du Département EFPA, Oct 2015, Rennes, France. 13 diapos. ⟨hal-02797408⟩

Zoé Gauthey, Jordi Gil, Marine Freychet, Laura Royer, Elie Chantriaux, et al.. Des Pyrénées aux Alpes, la sélection sexuelle dans tous ses états chez la truite commune. Réunion du Réseau Spam Salmonades du Département EFPA, Nov 2015, Thonon les Bains, France. 35 diapos. ⟨hal-01901378⟩

Olivier Lepais. Aspects génomiques de la maturation précoce chez les tacons mâles. Réunion du Réseau Spam Salmonades du Département EFPA, Nov 2015, Thonon-les-Bains, France. 16 diapos. ⟨hal-02798305⟩

Olivier Lepais, Stéphane Glise, Francois Gueraud, Jacques Rives, Aurélie Manicki, et al.. Paternal inheritance of alternative mating tactics in male Atlantic salmon. BES-SFE Joint 2014 Annual Meeting, Dec 2014, Lille, France. ⟨hal-02798280⟩

Olivier Lepais, Stéphane Glise, Francois Gueraud, Jacques Rives, Aurélie Manicki, et al.. Paternal inheritance of alternative mating tactics in male Atlantic salmon: Toward an integrated population genomics perspective.. 2. International Conference on Integrative Salmonid Biology, Jun 2014, Vancouver, Canada. ⟨hal-02797180⟩

Olivier Lepais, Franck F. Salin, Christophe C. Boury, Erwan Guichoux, Yec'Han Laizet, et al.. Simulation pour la prévision du nombre de locus ciblés par les approches de Génotypage par Séquençage. Réunion du réseau de génétique du Département EFPA, Nov 2014, Nancy, France. ⟨hal-02799259⟩

Olivier Lepais, Jessica Lavabre, Maya Gonzalez, Jerome Willm, Alain A. Cabanettes, et al.. Diversité et structuration génétique des chênes à l’échelle de deux paysages : impact de l’écologie, de l’histoire et de la gestion. 6. Colloque national du BRG. Ressources génétiques : des ressources partagées, Oct 2006, La Rochelle, France. ⟨hal-02758287⟩

Olivier Lepais, Emilie Chancerel, Christophe Boury, Franck Salin, Aurélie Manicki, et al.. Fast sequence-based microsatellite genotyping development workflow for any non-model species. 5. Colloque du GDR Génomique environnementales, 2019, La Rochelle, France. 2019. ⟨hal-02791502⟩

Agnes Bardonnet, Olivier Lepais, Valérie Bolliet, Stéphane Panserat, Jean-Claude Salvado, et al.. Impact of low flow on y-o-y Atlantic salmon : density-dependent and density-independent factors interact to decrease population resilience. Fisheries Society of the British Isles Annual Symposium, Jul 2017, Exeter, United Kingdom. 162 p., 2017, Understanding fish populations. Symposium handbook. ⟨hal-01604281⟩

Joëlle Chat, Séverine Masson, Aurélie Manicki, Francois Gueraud, Jacques Rives, et al.. Sea trout migrations and management practices. FSBI 2016. Annual symposium of the Fisheries Society of the British Isles, Jul 2016, Bangor, United Kingdom. 1 p., 2016. ⟨hal-01901394⟩

Cédric Tentelier, Olivier Lepais, Nicolas Larranaga. Individual reproductive success of Atlantic salmon male alternative mating tactics in the wild. Advances in the Population Ecology of Stream Salmonids, May 2015, Girona, Spain. 62 p., 2015, Advances in the population ecology of stream salmonids - 4. ⟨hal-01901360⟩

Agnes Bardonnet, Olivier Lepais. Effects of density, environment and parental origin on Y-O-Y Atlantic salmon survival, growth and early maturation. Advances in the Population Ecology of Stream Salmonids, May 2015, Girona, Spain. 62 p., 2015, Advances in the population ecology of stream salmonids - 4. ⟨hal-01901357⟩

Cédric Tentelier, Olivier Lepais, Nicolas Larranaga. Sex in space : how space use affects reproductive success of anadromous Atlantic salmon. Advances in the Population Ecology of Stream Salmonids, May 2015, Girona, Spain. 62 p., 2015, Advances in the population ecology of stream salmonids - 4. ⟨hal-01901361⟩

Olivier Lepais, Stéphane Glise, Francois Gueraud, Jacques Rives, Aurélie Manicki, et al.. Paternal inheritance of alternative mating tactics in male Atlantic salmon: Toward an integrated population genomics perspective.. 2. International Conference on Integrative Salmonid Biology, Jun 2014, Vancouver, Canada. 2014. ⟨hal-02797178⟩

Olivier Lepais, Franck F. Salin, Christophe C. Boury, Erwan Guichoux, Yec'Han Laizet, et al.. Genotyping By Sequencing development for Salmo salar: A simulation-based predictive approach using the R package SimRAD.. 2. International Conference on Integrative Salmonid Biology, Jun 2014, Vancouver, Canada. 2014. ⟨hal-02799311⟩

Joëlle Chat, Marin Tetillon, Aurélie Manicki, Francois Gueraud, Olivier Lepais. Les populations de truites de la Garonne (affluents girondins) et de la Leyre : génétique et scalimétrie. [Contrat] Fédération Départementale des Associations Agréées de Pêche et de Protection du Milieu Aquatique de la Gironde. 2018, 14 p. + annexes. ⟨hal-02025839⟩

Olivier Lepais. Estimation du nombre de reproducteurs efficaces : un nouvel indicateur de l’état des populations. [Contrat] Inconnu. 2017, 42 p. ⟨hal-02187476⟩

Eric Petit, Anthony Acou, Didier Azam, Agnes Bardonnet, Dominique D. Barloy, et al.. Dispersion et (re)colonisation du cours de la Sélune et de ses affluents. [Rapport de recherche] Agence de l'Eau Seine-Normandie. 2016, pp.18. ⟨hal-03357109⟩

Joëlle Chat, Aurélie Manicki, Francois Gueraud, Olivier Lepais. Continuité écologique et conservation de la diversité génétique et écotypique d'un grand migrateur (Salmo trutta). Rapport final. [Contrat] Inconnu. 2015, 55 p. ⟨hal-01901356⟩

Olivier Lepais. Étude comparée de la structuration génétique des chênes à l’échelle d’un paysage. [Stage] Université des Sciences et Technologies (Bordeaux 1), Talence, FRA.; Université de Bordeaux Ségalen (Bordeaux 2), Bordeaux, FRA. 2004, 23 p. ⟨hal-02832233⟩

Olivier Lepais. Dynamique d'hybridation dans le complexe d'espèces des chênes blancs européens (Chênes pédonculés - Quercus robur L., sessiles - Q. petraea (Matt.) Liebl., pubescents -Q. pubescens Willd. et tauzins - Q. pyrenaica Willd.). Sciences du Vivant [q-bio]. Université des Sciences et Technologies (Bordeaux 1), 2008. Français. ⟨tel-02821939⟩

Olivier Lepais, Jason T Weir. R package SimRAD: Simulations to predict the number of loci expected in RAD and GBS approaches. 2014. ⟨hal-02793040⟩