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Broadening of DNA replication origin usage during metazoan cell differentiation.

 Sébastien Dazy , Olivier Gandrillon , Olivier Hyrien , Marie-Noëlle Prioleau
EMBO Reports, 2006, 7 (8), pp.806-11. ⟨10.1038/sj.embor.7400736⟩
Article dans une revue hal-00193779v1
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Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

 Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
eLife, 2021, 10, ⟨10.7554/elife.62161⟩
Article dans une revue hal-03442948v1
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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

 Magali Hennion , Jean-Michel Arbona , Laurent Lacroix , Corinne Cruaud , Bertrand Theulot , et al.
Genome Biology, 2020, 21, ⟨10.1186/s13059-020-02013-3⟩
Article dans une revue hal-03055281v1
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Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint

 Diletta Ciardo , Olivier Haccard , Hemalatha Narassimprakash , Jean-Michel Arbona , Olivier Hyrien , et al.
2020
Pré-publication, Document de travail hal-02990823v1

Mapping DNA replication with nanopore sequencing

 Magali Hennion , Jean-Michel Arbona , Corinne Cruaud , Florence Proux , Benoît Le Tallec , et al.
2018, ⟨10.1101/426858⟩
Autre publication scientifique hal-02410486v1

FORK-seq: single molecule profiling of DNA replication

 Magali Hennion , Bertrand Theulot , Jean-Michel Arbona , B. Audit , Olivier Hyrien
Yeast functional genomics: Methods and Protocols, 2477, , pp.107-128, 2022, Methods in Molecular Biology
Chapitre d'ouvrage hal-03454731v1
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Genome-wide mapping of individual replication fork velocities using nanopore sequencing

 Bertrand Theulot , Laurent Lacroix , Jean-Michel Arbona , Gael A Millot , Etienne Jean , et al.
Nature Communications, 2022, 13 (1), pp.3295. ⟨10.1038/s41467-022-31012-0⟩
Article dans une revue pasteur-03693859v1

Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint

 Olivier Hyrien , Diletta Ciardo , Olivier Haccard , Hemalatha Narassimprakash , Jean-Michel Arbona , et al.
2020
Pré-publication, Document de travail hal-03052966v1
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Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers

 Rachel Deweerd , Eszter Németh , Ádám Póti , Nataliya Petryk , Chun-Long Chen , et al.
Cell Reports, 2022, 38 (12), pp.110555. ⟨10.1016/j.celrep.2022.110555⟩
Article dans une revue hal-03817515v1

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse

 Andres Canela , Haiqing Fu , Christophe Redon , Steven C. Pruitt , Yan Jaszczyszyn , et al.
Cell, 2018, 174 (5), pp.1127--1142.e19. ⟨10.1016/j.cell.2018.07.011⟩
Article dans une revue hal-02184422v1
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Replication landscape of the human genome

 Nataliya Petryk , Malik Kahli , Yves d'Aubenton-Carafa , Yan Jaszczyszyn , Yimin Shen , et al.
Nature Communications, 2016, 7, ⟨10.1038/ncomms10208⟩
Article dans une revue hal-01412672v1

ATR/Chk1 pathway is essential for resumption of DNA synthesis and cell survival in UV-irradiated XP variant cells

 Emmanuelle Despras , Fayza Daboussi , Olivier Hyrien , Kathrin Marheineke , Patricia Kannouche
Human Molecular Genetics, 2010, 19 (9), pp.1690-1701. ⟨10.1093/hmg/ddq046⟩
Article dans une revue hal-02963047v1

DNA replication timing is deterministic at the level of chromosomal domains but stochastic at the level of replicons in Xenopus egg extracts.

 H. Labit , I. Perewoska , T. Germe , O. Hyrien , K. Marheineke
Nucleic Acids Research, 2008, in press
Article dans une revue hal-00333216v1

Proliferating human cells hypomorphic for Orc2 and pre-RC formation have a defect in p53 activation and CDK2 kinase activation.

 Teezr Jk , Y. Machida , H. Labit , O. Novac , O. Hyrien , et al.
Journal of Biological Chemistry, 2006, 281(10), pp.6253-6260
Article dans une revue hal-00090747v1

Topological analysis of plasmid DNA replication intermediates using two-dimensional agarose gels

 O. Hyrien
Methods Mol. Biol., Springer, in press, 2008
Chapitre d'ouvrage hal-00333228v1

Universal temporal rate of DNA replication origin firing: A balance between origin activation and passivation

 Jean-Michel Arbona , Arach Goldar , Olivier Hyrien , Alain Arneodo , B. Audit
2018
Pré-publication, Document de travail hal-02410505v1

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

 Magali Hennion , Jean-Michel Arbona , Laurent Lacroix , Corinne Cruaud , Bertrand Theulot , et al.
Genome Biology, 2020, 21, pp.125. ⟨10.1186/s13059-020-02013-3⟩
Article dans une revue hal-02979039v1
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Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.

 Guillaume Guilbaud , Aurélien Rappailles , Antoine Baker , Chun-Long Chen , Alain Arneodo , et al.
PLoS Computational Biology, 2011, 7 (12), pp.e1002322. ⟨10.1371/journal.pcbi.1002322⟩
Article dans une revue inserm-00691534v1

Activation of stage-specific DNA replication origins during metazoan cell differentiation.

 S. Dazy , O. Gandrillon , O. Hyrien , Prioleau M.N.
EMBO Reports, 2006, 7, pp.806-811
Article dans une revue hal-00124088v1

A simple and optimized method of producing silanized surfaces for FISH and replication mapping on combed DNA fibers.

 H. Labit , Goldar a Guilbaud G , C. Douarche , O. Hyrien , K. Marheineke
Biotechniques, 2008, 45(6), pp.649-652, 654, 656-658
Article dans une revue hal-00406204v1
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Broadening of DNA replication origin usage during metazoan cell differentiation.

 Sébastien Dazy , Olivier Gandrillon , Olivier Hyrien , Marie-Noëlle Prioleau
EMBO Reports, 2006, 8, pp.806-811. ⟨10.1038/sj.embor.7400736⟩
Article dans une revue hal-00088647v1
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Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm

 Benjamin Audit , Antoine Baker , Chun-Long Chen , Aurélien Rappailles , Guillaume Guilbaud , et al.
Nature Protocols, 2013, 8 (1), pp.98-110. ⟨10.1038/nprot.2012.145⟩
Article dans une revue hal-01557077v1
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DNA molecular combing-based replication fork directionality profiling

 Marion Blin , Laurent Lacroix , Nataliya Petryk , Yan Jaszczyszyn , Chun-Long Chen , et al.
Nucleic Acids Research, 2021, ⟨10.1093/nar/gkab219⟩
Article dans une revue hal-03195930v1

From the chromatin interaction network to the organization of the human genome into replication N/U-domains

 Rasha E Boulos , Hanna Julienne , Antoine Baker , Chun-Long Chen , Nataliya Petryk , et al.
New Journal of Physics, 2014, 16 (11), pp.115014. ⟨10.1088/1367-2630/16/11/115014⟩
Article dans une revue cea-01120311v1

Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells

 Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
2019, ⟨10.1101/778423⟩
Autre publication scientifique hal-02410480v1

High-Throughput Optical Mapping of Replicating DNA

 Francesco de Carli , Nikita Menezes , Wahiba Berrabah , Valérie Barbe , Auguste Genovesio , et al.
Small Methods, 2018, 2 (9), pp.1800146. ⟨10.1002/smtd.201800146⟩
Article dans une revue hal-02361824v1

Genome-wide mapping of individual replication fork velocities using nanopore sequencing

 Bertrand Theulot , Laurent Lacroix , Jean-Michel Arbona , Gael Millot , Etienne Jean , et al.
Nature Communications, 2022, 13 (1), pp.3295. ⟨10.1038/s41467-022-31012-0⟩
Article dans une revue hal-03817406v1

Genome-Wide Alterations of the DNA Replication Program during Tumor Progression

 A. Arneodo , A. Goldar , Françoise Argoul , O. Hyrien , B. Audit
Physics of cancer: Interdisciplinary problems and clinical applications (PC’16), Mar 2016, Tomsk, Russia. pp.020002, ⟨10.1063/1.4960221⟩
Communication dans un congrès hal-01556059v1
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FORK-seq: Single-Molecule Profiling of DNA Replication

 Magali Hennion , Bertrand Theulot , Jean-Michel Arbona , Benjamin Audit , Olivier Hyrien
Methods in Molecular Biology, 2022, Yeast Functional Genomics. Methods and Protocols, 2477, pp.107 - 128. ⟨10.1007/978-1-0716-2257-5_8⟩
Article dans une revue hal-03817454v1

Human ORC/MCM density is low in active genes and correlates with replication time but does not solely define replication initiation zones

 Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
2020
Pré-publication, Document de travail hal-03052952v1
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