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Olivier Colliot

Olivier Colliot - Research Director at CNRS - ARAMIS Lab at the Paris Brain Institute (CNRS/Inria/Inserm/Sorbonne Universite)
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Présentation

Research Director at [CNRS](http://www.cnrs.fr/) Head of the [ARAMIS Lab](http://www.aramislab.fr/), a joint team between [CNRS](http://www.cnrs.fr/), [Inria](http://www.inria.fr/), [Inserm](http://www.inserm.fr/) and [University Pierre and Marie Curie](http://www.upmc.fr/) at the [Paris Brain Institute (ICM)](http://www.icm-institute.org/), in co-direction with Stanley Durrleman. Homepage: <https://www.aramislab.fr/perso/colliot/> Email: olivier.colliot@cnrs.fr
Research Director at [CNRS](http://www.cnrs.fr/) Head of the [ARAMIS Lab](http://www.aramislab.fr/), a joint team between [CNRS](http://www.cnrs.fr/), [Inria](http://www.inria.fr/), [Inserm](http://www.inserm.fr/) and [University Pierre and Marie Curie](http://www.upmc.fr/) at the [Paris Brain Institute (ICM)](http://www.icm-institute.org/), in co-direction with Stanley Durrleman. Homepage: <https://www.aramislab.fr/perso/colliot/> Email: olivier.colliot@cnrs.fr

Domaines de recherche

Intelligence artificielle [cs.AI] Imagerie médicale Apprentissage [cs.LG] Traitement des images [eess.IV]

Publications

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Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data

Sophie Loizillon , Simona Bottani , Aurélien Maire , Sebastian Ströer , Didier Dormont
Medical Image Analysis, 2024, 93, pp.103073. ⟨10.1016/j.media.2023.103073⟩
Article dans une revue hal-03910451v2
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Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
BMC Medical Imaging, 2024, 24 (1), pp.67. ⟨10.1186/s12880-024-01242-3⟩
Article dans une revue hal-03497645v2
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Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PET

Ravi Hassanaly , Camille Brianceau , Maëlys Solal , Olivier Colliot , Ninon Burgos
Journal of Machine Learning for Biomedical Imaging, 2024, Special Issue for Generative Models, 2, pp.611. ⟨10.59275/j.melba.2024-b87a⟩
Article dans une revue hal-04315738v2
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Temporo-basal sulcal connections: a manual annotation protocol and an investigation of sexual dimorphism and heritability

Kevin de Matos , Claire Cury , Lydia Chougar , Lachlan T Strike , Thibault Rolland
Brain Structure and Function, 2023, 228 (6), pp.1459-1478. ⟨10.1007/s00429-023-02663-6⟩
Article dans une revue hal-04132176v1
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Automatic segmentation of the choroid plexuses: Method and validation in controls and patients with multiple sclerosis

Arya Yazdan-Panah , Marius Schmidt-Mengin , Vito A.G. Ricigliano , Théodore Soulier , Bruno Stankoff
Neuroimage-Clinical, 2023, 38, pp.103368. ⟨10.1016/j.nicl.2023.103368⟩
Article dans une revue hal-04026889v1
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Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Dario Saracino , Sebastian Stroer
Medical Image Analysis, 2023, 89, pp.102903
Article dans une revue hal-03656136v2
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Comparison of mean diffusivity, R2* relaxation rate and morphometric biomarkers for the clinical differentiation of parkinsonism

Lydia Chougar , François-Xavier Lejeune , Johann Faouzi , Benjamin Morino , Alice Faucher
Parkinsonism & Related Disorders, 2023, 108, pp.105287. ⟨10.1016/j.parkreldis.2023.105287⟩
Article dans une revue hal-04041736v2
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Genomic loci influence patterns of structural covariance in the human brain

Junhao Wen , Ilya M Nasrallah , Ahmed Abdulkadir , Theodore D Satterthwaite , Zhijian Yang
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (52), ⟨10.1073/pnas.2300842120⟩
Article dans une revue hal-04362321v1
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How will tomorrow’s algorithms fuse multimodal data? The example of the neuroprognosis in Intensive Care

Théodore Soulier , Olivier Colliot , Nicholas Ayache , Benjamin Rohaut
Anaesthesia Critical Care & Pain Medicine, inPress, pp.101301. ⟨10.1016/j.accpm.2023.101301⟩
Article dans une revue hal-04227434v1

The impact of aging on human brain network target controllability

Giulia Bassignana , Giordano Lacidogna , Paolo Bartolomeo , Olivier Colliot , Fabrizio de Vico Fallani
Brain Structure and Function, 2022, ⟨10.1007/s00429-022-02584-w⟩
Article dans une revue hal-03830858v1
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Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Adam Wild , Sébastian Ströer
Medical Image Analysis, 2022, 75, ⟨10.1016/j.media.2021.102219⟩
Article dans une revue hal-03154792v4
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Article dans une revue hal-03351976v2
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Online hard example mining vs. fixed oversampling strategy for segmentation of new multiple sclerosis lesions from longitudinal FLAIR MRI

Marius Schmidt- Mengin , Théodore Soulier , Mariem Hamzaoui , Arya Yazdan-Panah , Benedetta Bodini
Frontiers in Neuroscience, 2022, 16, pp.100405. ⟨10.3389/fnins.2022.1004050⟩
Article dans une revue hal-03836922v1
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Disease progression score estimation from multimodal imaging and microRNA data using supervised variational autoencoders

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Daisy Rinaldi , Agnes Camuzat
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (12), pp.1-12. ⟨10.1109/JBHI.2022.3208517⟩
Article dans une revue hal-03789357v1
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Multilevel Survival Modeling with Structured Penalties for Disease Prediction from Imaging Genetics data

Pascal Lu , Olivier Colliot
IEEE Journal of Biomedical and Health Informatics, 2022, 26 (2), pp.798-808. ⟨10.1109/JBHI.2021.3100918⟩
Article dans une revue hal-03311509v2
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MicroRNA signatures in genetic frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Morwena Latouche , Dario Saracino , Daisy Rinaldi , Agnès Camuzat
Annals of Clinical and Translational Neurology, 2022, pp.1-14. ⟨10.1002/acn3.51674⟩
Article dans une revue hal-03826747v1
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Parsimonious model for mass-univariate vertexwise analysis

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn Kemper , Julia Sidorenko , Naomi Wray
Journal of Medical Imaging, 2022, 9 (05), ⟨10.1117/1.JMI.9.5.052404⟩
Article dans une revue hal-03675041v1
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Machine learning-based prediction of impulse control disorders in Parkinson's disease from clinical and genetic data

Johann Faouzi , Samir Bekadar , Fanny Artaud , Alexis Elbaz , Graziella Mangone
IEEE Open Journal of Engineering in Medicine and Biology, 2022, 3, pp.96 - 107. ⟨10.1109/OJEMB.2022.3178295⟩
Article dans une revue hal-03680714v2
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Association of APOE-Independent Alzheimer Disease Polygenic Risk Score With Brain Amyloid Deposition in Asymptomatic Older Adults

Laura Xicota , Beata Gyorgy , Benjamin Grenier-Boley , Alexandre Lecoeur , Gaelle Fontaine
Neurology, 2022, 99 (5), pp.10.1212/WNL.0000000000200544. ⟨10.1212/WNL.0000000000200544⟩
Article dans une revue hal-03676479v1
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Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review

Manon Ansart , Stéphane Epelbaum , Giulia Bassignana , Alexandre Bône , Simona Bottani
Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/j.media.2020.101848⟩
Article dans une revue hal-02337815v2
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Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Ninon Burgos , Mauricio Diaz , Michael Bacci , Simona Bottani
Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩
Article dans une revue hal-02308126v4
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Gaussian Graphical Model exploration and selection in high dimension low sample size setting

Thomas Lartigue , Simona Bottani , Stephanie Baron , Olivier Colliot , Stanley Durrleman
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2021, 43 (9), pp.3196-3213. ⟨10.1109/TPAMI.2020.2980542⟩
Article dans une revue hal-02504034v1
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Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer’s disease

Vincent Henry , Ivan Moszer , Olivier Dameron , Laura Vila Xicota , Bruno Dubois
Database - The journal of Biological Databases and Curation, 2021, pp.1-33. ⟨10.1093/database/baab004⟩
Article dans une revue hal-03144306v1
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Exploratory analysis of the genetics of impulse control disorders in Parkinson's disease using genetic risk scores

Johann Faouzi , Baptiste Couvy-Duchesne , Samir Bekadar , Olivier Colliot , Jean-Christophe Corvol
Parkinsonism & Related Disorders, 2021, 86, pp.74 - 77. ⟨10.1016/j.parkreldis.2021.04.003⟩
Article dans une revue hal-03298502v2
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Step-wise target controllability identifies dysregulated pathways of macrophage networks in multiple sclerosis

Giulia Bassignana , Jennifer Fransson , Vincent Henry , Olivier Colliot , Violetta Zujovic
Network Neuroscience, 2021, 5 (2), pp.337-357. ⟨10.1162/netn_a_00180⟩
Article dans une revue hal-03022314v1
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A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI

Alexis Guyot , Ana B Graciano Fouquier , Emilie Gerardin , Marie Chupin , Joan Glaunès
IEEE Transactions on Biomedical Engineering, 2021, 68 (2), pp.393-403. ⟨10.1109/TBME.2020.2999941⟩
Article dans une revue hal-02359660v2
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AD Course Map charts Alzheimer’s disease progression

Igor Koval , Alexandre Bône , Maxime Louis , Thomas Lartigue , Simona Bottani
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-87434-1⟩
Article dans une revue hal-01964821v3
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Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimer's disease

Junhao Wen , Jorge Samper-González , Simona Bottani , Alexandre Routier , Ninon Burgos
Neuroinformatics, 2021, 19 (1), pp.57-78. ⟨10.1007/s12021-020-09469-5⟩
Article dans une revue hal-02566361v2
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Radiological classification of dementia from anatomical MRI assisted by machine learning-derived maps

Pierre Chagué , Béatrice Marro , Sarah Fadili , Marion Houot , Alexandre Morin
Journal de Neuroradiologie / Journal of Neuroradiology, 2021, 48 (6), pp.412-418. ⟨10.1016/j.neurad.2020.04.004⟩
Article dans une revue hal-02641005v1
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Primary Progressive Aphasia Associated With GRN Mutations: New Insights Into the Non-amyloid Logopenic Variant

Dario Saracino , Sophie Ferrieux , Marie Nogues-Lassiaille , Marion Houot , Aurélie Funkiewiez
Neurology, 2021, 97 (1), pp.e88-e102. ⟨10.1212/wnl.0000000000012174⟩
Article dans une revue hal-03281660v1
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Anomaly detection for the individual analysis of brain PET images

Ninon Burgos , Jorge M. Cardoso , Jorge Samper-González , Marie-Odile Habert , Stanley Durrleman​
Journal of Medical Imaging, 2021, 8 (02), pp.024003. ⟨10.1117/1.JMI.8.2.024003⟩
Article dans une revue hal-03193306v1
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Plasma NfL levels and longitudinal change rates in C9orf72 and GRN-associated diseases: from tailored references to clinical applications

Dario Saracino , Karim Dorgham , Agnès Camuzat , Daisy Rinaldi , Armelle Rametti-Lacroux
Journal of Neurology, Neurosurgery and Psychiatry, 2021, 92 (12), pp.1278-1288. ⟨10.1136/jnnp-2021-326914⟩
Article dans une revue hal-03337055v1
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Deep learning for brain disorders: from data processing to disease treatment

Ninon Burgos , Simona Bottani , Johann Faouzi , Elina Thibeau-Sutre , Olivier Colliot
Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩
Article dans une revue hal-03070554v1
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Genome wide association study of incomplete hippocampal inversion in adolescents

Claire Cury , Marzia Antonella Scelsi , Roberto Toro , Vincent Frouin , Eric Artiges
PLoS ONE, 2020, 15 (1), ⟨10.1371/journal.pone.0227355⟩
Article dans une revue hal-02416654v2
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Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Junhao Wen , Elina Thibeau-Sutre , Mauricio Diaz-Melo , Jorge Samper-González , Alexandre Routier
Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/j.media.2020.101694⟩
Article dans une revue hal-02562504v2
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Learning the spatiotemporal variability in longitudinal shape data sets

Alexandre Bône , Olivier Colliot , Stanley Durrleman
International Journal of Computer Vision, 2020, 128, pp.2873-2896. ⟨10.1007/s11263-020-01343-w⟩
Article dans une revue hal-02091549v5
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Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Virgilio Kmetzsch , Vincent Anquetil , Dario Saracino , Daisy Rinaldi , Agnès Camuzat
Journal of Neurology, Neurosurgery and Psychiatry, 2020, 92 (5), pp.485-493. ⟨10.1136/jnnp-2020-324647⟩
Article dans une revue hal-03046771v1
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Predicting PET-derived Myelin Content from Multisequence MRI for Individual Longitudinal Analysis in Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Matteo Tonietto , Stanley Durrleman
NeuroImage, 2020, 223C (117308), ⟨10.1016/j.neuroimage.2020.117308⟩
Article dans une revue hal-02922534v1
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Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort

Alexandre Morin , Jorge Samper-González , Anne Bertrand , Sebastian Ströer , Didier Dormont
Journal of Alzheimer's Disease, 2020, pp.1-10. ⟨10.3233/JAD-190594⟩
Article dans une revue hal-02511532v1
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A unified framework for association and prediction from vertex-wise grey-matter structure

Baptiste Couvy‐duchesne , Lachlan T Strike , Futao Zhang , Yan Holtz , Zhili Zheng
Human Brain Mapping, 2020, ⟨10.1002/hbm.25109⟩
Article dans une revue hal-02904458v1
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Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Article dans une revue hal-03136463v1
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Automated Categorization of Parkinsonian Syndromes Using Magnetic Resonance Imaging in a Clinical Setting

Lydia Chougar , Johann Faouzi , Nadya Pyatigorskaya , Lydia Yahia‐cherif , Rahul Gaurav
Movement Disorders, 2020, ⟨10.1002/mds.28348⟩
Article dans une revue hal-03046578v2
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Cognitive inhibition impairments in presymptomatic C9orf72 carriers

Maxime Montembeault , Sabrina Sayah , Daisy Rinaldi , Benjamin Le Toullec , Anne Bertrand
Journal of Neurology, Neurosurgery and Psychiatry, 2020, ⟨10.1136/jnnp-2019-322242⟩
Article dans une revue hal-02484794v1
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Machine learning for classification and prediction of brain diseases: recent advances and upcoming challenges

Ninon Burgos , Olivier Colliot
Current Opinion in Neurology, 2020, 33 (4), pp.439-450. ⟨10.1097/WCO.0000000000000838⟩
Article dans une revue hal-02902586v1
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Comparison and validation of seven white matter hyperintensities segmentation software in elderly patients

Quentin Vanderbecq , Eric Xu , Sebastian Stroër , Baptiste Couvy-Duchesne , Mauricio Diaz-Melo
Neuroimage-Clinical, 2020, 27, pp.102357. ⟨10.1016/j.nicl.2020.102357⟩
Article dans une revue hal-02926474v1
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The White Matter Module-Hub Network of Semantics Revealed by Semantic Dementia

Martina Sundqvist , Alexandre Routier , Bruno Dubois , Olivier Colliot , Marc Teichmann
Journal of Cognitive Neuroscience, 2020, pp.1-18. ⟨10.1162/jocn_a_01549⟩
Article dans une revue hal-02554966v1
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Neurite density is reduced in the presymptomatic phase of C9orf72 disease

Junhao Wen , Hui Zhang , Daniel C Alexander , Stanley Durrleman , Alexandre Routier
Journal of Neurology, Neurosurgery and Psychiatry, 2019, J Neurol Neurosurg Psychiatry, 90 (4), pp.387-94. ⟨10.1136/jnnp-2018-318994⟩
Article dans une revue hal-01907482v1
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Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Olivier Colliot
Journal of Medical Imaging, 2019, 6 (01), ⟨10.1117/1.JMI.6.1.014005⟩
Article dans une revue hal-02042526v2
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Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition

Maxime Bertoux , Julien Lagarde , Fabian Corlier , Lorraine Hamelin , Jean-François Mangin
Neurobiology of Aging, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩
Article dans une revue inserm-02266990v1
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Interpretable and reliable artificial intelligence systems for brain diseases

Olivier Colliot
ERCIM News, 2019, 118
Article dans une revue hal-02178901v1
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Reduction of recruitment costs in preclinical AD trials. Validation of automatic pre-screening algorithm for brain amyloidosis

Manon Ansart , Stéphane Epelbaum , Geoffroy Gagliardi , Olivier Colliot , Didier Dormont
Statistical Methods in Medical Research, 2019, pp.096228021882303. ⟨10.1177/0962280218823036⟩
Article dans une revue hal-01964942v2
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Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache
Medical Image Analysis, 2019, 58 (101546), ⟨10.1016/j.media.2019.101546⟩
Article dans une revue hal-02276634v1
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Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer's disease

Patrizia A Chiesa , Enrica Cavedo , Andrea Vergallo , Simone Lista , Marie-Claude Potier
Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2019, 15 (7), pp.940-950. ⟨10.1016/j.jalz.2019.03.006⟩
Article dans une revue hal-02368904v1
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Presymptomatic spinal cord pathology in c9orf72 mutation carriers: a longitudinal neuroimaging study

Giorgia Querin , Peter Bede , Mohamed Mounir El Mendili , Menghan Li , Mélanie Pélégrini-Issac
Annals of Neurology, 2019, 86 (2), pp.158-167. ⟨10.1002/ana.25520⟩
Article dans une revue hal-02265301v1
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Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers

Clémence Fournier , Mathieu Barbier , Agnès Camuzat , Vincent Anquetil , Serena Lattante
Neurobiology of Aging, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩
Article dans une revue hal-02025976v1
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Disrupted core-periphery structure of multimodal brain networks in Alzheimer’s disease

Jérémy Guillon , Mario Chavez , Federico Battiston , Yohan Attal , Valentina La Corte
Network Neuroscience, 2019, 3 (2), pp.635-652. ⟨10.1162/netn_a_00087⟩
Article dans une revue hal-02265308v1
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Tribute to Anne Bertrand (1978–2018): Neuroradiologist, scientist, teacher and friend

Didier Dormont , Noam Ben-Eliezer , Ninon Burgos , Olivier Colliot , Fabrizio de Vico Fallani
Journal de Neuroradiologie / Journal of Neuroradiology, 2019, 46 (2), pp.155-159. ⟨10.1016/j.neurad.2019.01.001⟩
Article dans une revue hal-02265305v1
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The structure of the mental lexicon: what primary progressive aphasias reveal

Clara Sanches , Alexandre Routier , Olivier Colliot , Marc Teichmann
Neuropsychologia, 2018, 109, pp.107-115. ⟨10.1016/j.neuropsychologia.2017.12.018⟩
Article dans une revue hal-01672932v1

Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias

Aline Mendes , Anne Bertrand , Foudil Lamari , Olivier Colliot , Alexandre Routier
Neurology, 2018, 90 (12), pp.e1057 - e1065. ⟨10.1212/WNL.0000000000005165⟩
Article dans une revue hal-01820415v1
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Structural, Microstructural, and Metabolic Alterations in Primary Progressive Aphasia Variants

Alexandre Routier , Marie-Odile Habert , Anne Bertrand , Aurélie Kas , Martina Sundqvist
Frontiers in Neurology, 2018, 9, ⟨10.3389/fneur.2018.00766⟩
Article dans une revue hal-01897015v1
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Early cognitive, structural and microstructural changes in c9orf72 presymptomatic carriers before 40 years of age

Anne Bertrand , Junhao Wen , Daisy Rinaldi , Marion Houot , Sabrina Sayah
JAMA neurology, 2018, 75 (2), pp.236-245. ⟨10.1001/jamaneurol.2017.4266⟩
Article dans une revue hal-01654000v1
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Cognitive and neuroimaging features and brain β-amyloidosis in individuals at risk of Alzheimer's disease (INSIGHT-preAD): a longitudinal observational study

Bruno Dubois , Stéphane Epelbaum , Francis Nyasse , Hovagim Bakardjian , Geoffroy Gagliardi
The Lancet Neurology, 2018, 17 (4), pp.335 - 346. ⟨10.1016/S1474-4422(18)30029-2⟩
Article dans une revue hal-01777834v1
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Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids

Claire Cury , Joan Glaunès , Roberto Toro , Marie Chupin , Gunter Schumann
Frontiers in Neuroscience, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩
Article dans une revue hal-01920263v2
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Revolution of Alzheimer Precision Neurology. Passageway of Systems Biology and Neurophysiology

Harald Hampel , Nicola Toschi , Claudio Babiloni , Filippo Baldacci , Keith L Black
Journal of Alzheimer's Disease, 2018, 64 (s1), pp.S47 - S105. ⟨10.3233/jad-179932⟩
Article dans une revue hal-01910402v1
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Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data

Jorge Samper-González , Ninon Burgos , Simona Bottani , Sabrina Fontanella , Pascal Lu
NeuroImage, 2018, 183, pp.504-521. ⟨10.1016/j.neuroimage.2018.08.042⟩
Article dans une revue hal-01858384v2
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Spatiotemporal Propagation of the Cortical Atrophy: Population and Individual Patterns

Igor Koval , Jean-Baptiste Schiratti , Alexandre M Routier , Michael Bacci , Olivier Colliot
Frontiers in Neurology, 2018, 9, pp.235. ⟨10.3389/fneur.2018.00235⟩
Article dans une revue hal-01910400v1
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An Automated Pipeline for the Analysis of PET Data on the Cortical Surface

Arnaud Marcoux , Ninon Burgos , Anne Bertrand , Marc Teichmann , Alexandre Routier
Frontiers in Neuroinformatics, 2018, 12, ⟨10.3389/fninf.2018.00094⟩
Article dans une revue hal-01950933v1
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Double diffeomorphism: combining morphometry and structural connectivity analysis

Pietro Gori , Olivier Colliot , Linda Marrakchi Kacem , Yulia Worbe , Alexandre Routier
IEEE Transactions on Medical Imaging, 2018, 37 (9), pp.2033-2043. ⟨10.1109/TMI.2018.2813062⟩
Article dans une revue hal-01709847v2
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Multi-modal brain fingerprinting: a manifold approximation based framework

Kuldeep Kumar , Laurent Chauvin , Matthew Toews , Olivier Colliot , Christian Desrosiers
NeuroImage, 2018, 183, pp.212 - 226. ⟨10.1016/j.neuroimage.2018.08.006⟩
Article dans une revue hal-01910367v1
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Amyloidosis and neurodegeneration result in distinct structural connectivity patterns in mild cognitive impairment

Thomas Jacquemont , Fabrizio de Vico Fallani , Anne Bertrand , Stéphane Epelbaum , Alexandre Routier
Neurobiology of Aging, 2017, ⟨10.1016/j.neurobiolaging.2017.03.023⟩
Article dans une revue hal-01518785v1
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A Bayesian mixed-effects model to learn trajectories of changes from repeated manifold-valued observations

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Journal of Machine Learning Research, 2017, 18, pp.1-33
Article dans une revue hal-01540367v3
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Fiberprint: A subject fingerprint based on sparse code pooling for white matter fiber analysis

Kuldeep Kumar , Christian Desrosiers , Kaleem Siddiqi , Olivier Colliot , Matthew Toews
NeuroImage, 2017, 158, pp.242 - 259. ⟨10.1016/j.neuroimage.2017.06.083⟩
Article dans une revue hal-01562449v1

Cortical amyloid accumulation is associated with alterations of structural integrity in older people with subjective memory complaints

Stefan Teipel , Enrica Cavedo , Sarah Weschke , Michel Grothe , Katrine Rojkova
Neurobiology of Aging, 2017, 57, pp.143-152. ⟨10.1016/j.neurobiolaging.2017.05.016⟩
Article dans une revue hal-03769687v1
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A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Cyril Poupon
Medical Image Analysis, 2017, 35, pp.458-474. ⟨10.1016/j.media.2016.08.011⟩
Article dans une revue hal-01359423v1
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Reduced basal forebrain atrophy progression in a randomized Donepezil trial in prodromal Alzheimer's disease

Enrica Cavedo , Michel J Grothe , Olivier Colliot , Simone Lista , Marie Chupin
Scientific Reports, 2017, 7 (1), pp.11706. ⟨10.1038/s41598-017-09780-3⟩
Article dans une revue hal-01589622v1
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Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease

Claire Cury , Joan Glaunès , Marie Chupin , Olivier Colliot
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩
Article dans une revue hal-01135304v1
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Early life adversity is associated with a smaller hippocampus in male but not female depressed in-patients: a case–control study

Romain Colle , Tomoyuki Segawa , Marie Chupin , Minh Ngoc Thien Kim Tran Dong , Patrick Hardy
BMC Psychiatry, 2017, 17 (1), pp.71. ⟨10.1186/s12888-017-1233-2⟩
Article dans une revue hal-01474139v1
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Loss of brain inter-frequency hubs in Alzheimer's disease.

Jérémy Guillon , Yohan Attal , Valentina La Corte , Olivier Colliot , Bruno Dubois
Scientific Reports, 2017, 7 (1), pp.10879. ⟨10.1038/s41598-017-07846-w⟩
Article dans une revue hal-01578419v1

Predictors of cognitive decline and treatment response in a clinical trial on suspected prodromal Alzheimer's disease

Stefan J Teipel , Enrica Cavedo , Michel J Grothe , Simone Lista , Samantha Galluzzi
Neuropharmacology, 2016, 108, pp.128-35. ⟨10.1016/j.neuropharm.2016.02.005⟩
Article dans une revue hal-01372417v1

Smaller hippocampal volumes predict lower antidepressant response/remission rates in depressed patients: A meta-analysis

Romain Colle , Irène Dupong , Olivier Colliot , Eric Deflesselle , Patrick Hardy
World Journal of Biological Psychiatry, 2016, pp.1-23. ⟨10.1080/15622975.2016.1208840⟩
Article dans une revue hal-01372398v1
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Parsimonious Approximation of Streamline Trajectories in White Matter Fiber Bundles

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Fabrizio de Vico Fallani
IEEE Transactions on Medical Imaging, 2016, PP (99), ⟨10.1109/TMI.2016.2591080⟩
Article dans une revue hal-01346067v1
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Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion

Romain Colle , Claire Cury , Marie Chupin , Eric Deflesselle , Patrick Hardy
Neuroimage-Clinical, 2016, ⟨10.1016/j.nicl.2016.04.009⟩
Article dans une revue hal-01310464v1

Early and protective microglial activation in Alzheimer's disease: a prospective study using 18F-DPA-714 PET imaging

Lorraine Hamelin , Julien Lagarde , Guillaume Dorothée , Claire Leroy , Mickael Labit
Brain - A Journal of Neurology , 2016, 139 (Pt 4), pp.1252-64. ⟨10.1093/brain/aww017⟩
Article dans une revue hal-01372414v1
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Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices

Linda Marrakchi-Kacem , Alexandre Vignaud , Julien Sein , Johanne Germain , Thomas R Henry
Magnetic Resonance Materials in Physics, Biology and Medicine, 2016
Article dans une revue hal-01321870v2
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Reduced Regional Cortical Thickness Rate of Change in Donepezil-Treated Subjects With Suspected Prodromal Alzheimer’s Disease

Enrica Cavedo , Bruno Dubois , Olivier Colliot , Simone Lista , Bernard Croisile
Journal of Clinical Psychiatry, 2016, ⟨10.4088/JCP.15m10413⟩
Article dans une revue hal-01388951v1
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White matter lesions in FTLD: distinct phenotypes characterize GRN and C9ORF72 mutations

Fatima Ameur , Olivier Colliot , Paola Caroppo , Sebastian Stroer , Didier Dormont
Neurology Genetics, 2016, 2 (1), ⟨10.1212/NXG.0000000000000047⟩
Article dans une revue hal-01266596v1
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CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts

Grégory Operto , Marie Chupin , Bénédicte Batrancourt , Marie-Odile Habert , Olivier Colliot
Neuroinformatics, 2016, pp.1-12. ⟨10.1007/s12021-016-9295-8⟩
Article dans une revue hal-01303094v1

Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease

Bruno Dubois , Marie Chupin , Harald Hampel , Simone Lista , Enrica Cavedo
Alzheimer's & Dementia : the Journal of the Alzheimer's Association, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩
Article dans une revue hal-01249861v1

Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts

Romain Colle , Marie Chupin , Claire Cury , Christophe Vandendrie , Florence Gressier
Journal of Psychiatric Research, 2015, 61, pp.6. ⟨10.1016/j.jpsychires.2014.12.010⟩
Article dans une revue hal-01108928v1
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Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects

Claire Cury , Roberto Toro , Fanny Cohen , Clara Fischer , Amel Mhaya
Frontiers in Neuroanatomy, 2015, 9, pp.160. ⟨10.3389/fnana.2015.00160⟩
Article dans une revue hal-01251239v1
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Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?

Paola Caroppo , Marie-Odile Habert , Stanley Durrleman , Aurélie Funkiewiez , Vincent Perlbarg
Journal of Alzheimer's Disease, 2015, 47 (3), pp.751-9. ⟨10.3233/JAD-150270⟩
Article dans une revue hal-01220380v1

Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease

Lorraine Hamelin , Maxime Bertoux , Michel Bottlaender , Helene Corne , Julien Lagarde
Neurobiology of Aging, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩
Article dans une revue hal-01254276v1
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Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study

Claire Boutet , Marie Chupin , Stéphane Lehéricy , Linda Marrakchi-Kacem , Stéphane Epelbaum
Neuroimage-Clinical, 2014, 5, pp.341-8
Article dans une revue hal-01099185v1

Perspective on future role of biological markers in clinical therapy trials of Alzheimer's disease: a long-range point of view beyond 2020

Harald Hampel , Simone Lista , Stefan J Teipel , Francesco Garaci , Robert Nisticò
Biochemical Pharmacology, 2014, pp.426-49
Article dans une revue hal-01098832v1

Extensive white matter involvement in patients with frontotemporal lobar degeneration: think progranulin

Paola Caroppo , Isabelle Le Ber , Agnès Camuzat , Fabienne Clot , Lionel Naccache
JAMA neurology, 2014, 71 (12), pp.1562-6
Article dans une revue hal-01439037v1

Structural connectivity differences in left and right temporal lobe epilepsy

Pierre Besson , Vera Dinkelacker , Romain Valabregue , Lionel Thivard , Xavier Leclerc
NeuroImage, 2014, pp.135-44
Article dans une revue hal-01098831v1
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The road ahead to cure Alzheimer’s disease: development of biological markers and neuroimaging methods for prevention trials across all stages and target populations

Enrica Cavedo , Simone Lista , Zaven S Khachaturian , Paul S Aisen , Philippe Amouyel
The Journal of prevention of Alzheimer's disease, 2014, 1 (3), pp.181-202. ⟨10.14283/jpad.2014.32⟩
Article dans une revue hal-01098836v1

The clinical and anatomical heterogeneity of environmental dependency phenomena

Julien Lagarde , Romain Valabrègue , Jean-Christophe Corvol , Isabelle Le Ber , Olivier Colliot
Journal of Neurology, 2013, 260 (9), pp.2262-70. ⟨10.1007/s00415-013-6976-1⟩
Article dans une revue hal-00867487v1
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Magnetic resonance imaging for diagnosis of early Alzheimer's disease

Olivier Colliot , Lorraine Hamelin , Marie Sarazin
Revue Neurologique, 2013, 169 (10), pp.724-8. ⟨10.1016/j.neurol.2013.07.013⟩
Article dans une revue hal-00867481v1
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Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data

Rémi Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩
Article dans une revue hal-00790079v1

Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?

Leonardo Cruz de Souza , Marie Chupin , Maxime Bertoux , Stéphane Lehéricy , Bruno Dubois
Journal of Alzheimer's Disease, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩
Article dans une revue hal-00815740v1

CSF tau markers are correlated with hippocampal volume in Alzheimer's disease

Leonardo C de Souza , Marie Chupin , Foudil Lamari , Claude Jardel , Delphine Leclercq
Neurobiology of Aging, 2012, 33 (7), pp.1253-7. ⟨10.1016/j.neurobiolaging.2011.02.022⟩
Article dans une revue hal-00795742v1

Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease

Guillaume Dorothée , Michel Bottlaender , Edmond Moukari , Leonardo de Souza , Renaud Maroy
Archives of Neurology -Chigago-, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩
Article dans une revue hal-00790083v1

Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?

Claire Boutet , Marie Chupin , Olivier Colliot , Marie Sarazin , Gurkan Mutlu
Neuroradiology, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩
Article dans une revue hal-00790081v1
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Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation

Thomas Samaille , Ludovic Fillon , Rémi Cuingnet , Eric Jouvent , Hugues Chabriat
PLoS ONE, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩
Article dans une revue hal-00789657v1

Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities

Hosung Kim , Marie Chupin , Olivier Colliot , Boris C Bernhardt , Neda Bernasconi
NeuroImage, 2012, 59 (4), pp.3178-3186. ⟨10.1016/j.neuroimage.2011.11.040⟩
Article dans une revue hal-00790810v1

Diffeomorphic brain registration under exhaustive sulcal constraints.

Guillaume Auzias , Olivier Colliot , Joan Alexis Glaunès , Matthieu Perrot , Jean-François Mangin
IEEE Transactions on Medical Imaging, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩
Article dans une revue hal-00793675v1

Early ADC changes in motor structures predict outcome of acute stroke better than lesion volume

Charlotte Rosso , Olivier Colliot , Christian Pires , Christine Delmaire , Romain Valabrègue
Journal de Neuroradiologie / Journal of Neuroradiology, 2011, 38 (2), pp.105-12. ⟨10.1016/j.neurad.2010.05.001⟩
Article dans une revue hal-00805381v1
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Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database

Rémi Cuingnet , Emilie Gerardin , Jérôme Tessieras , Guillaume Auzias , Stéphane Lehéricy
NeuroImage, 2011, 56 (2), pp.766-81. ⟨10.1016/j.neuroimage.2010.06.013⟩
Article dans une revue hal-00795739v1

Segmentation ciblée d’images IRM et maladie d’Alzheimer

Marie Chupin , Emilie Gérardin , Rémi Cuingnet , Eric Bardinet , Didier Dormont
Innovation and Research in BioMedical engineering, 2011
Article dans une revue hal-01413898v1

Line Garnero (1955-2009): pluridisciplinarity at the heart. Tribute to Line Garnero, director of research at CNRS.

Sylvain Baillet , Jean Brunol , Pierre Chavel , Olivier Colliot , Mireille Cuniot-Ponsard
Innovation and Research in BioMedical engineering, 2011, 32 (1), pp.1-7
Article dans une revue hal-00671399v1

Similar amyloid-β burden in posterior cortical atrophy and Alzheimer's disease

Leonardo Cruz de Souza , Fabian Corlier , Marie-Odile Habert , Olga Uspenskaya , Renaud Maroy
Brain - A Journal of Neurology , 2011, 134 (Pt 7), pp.2036-43. ⟨10.1093/brain/awr130⟩
Article dans une revue hal-00795743v1

Tissue at risk in the deep middle cerebral artery territory is critical to stroke outcome.

Charlotte Rosso , Olivier Colliot , Romain Valabrègue , Sophie Crozier , Didier Dormont
Neuroradiology, 2011, 53 (10), pp.763-71. ⟨10.1007/s00234-011-0916-5⟩
Article dans une revue hal-00795756v1

Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome

Rémi Cuingnet , Charlotte Rosso , Marie Chupin , Stéphane Lehéricy , Didier Dormont
Medical Image Analysis, 2011, 15 (5), pp.729-37. ⟨10.1016/j.media.2011.05.007⟩
Article dans une revue hal-00795741v1

The amnestic syndrome of hippocampal type in Alzheimer's disease: an MRI study

Marie Sarazin , Valérie Chauviré , Emilie Gerardin , Olivier Colliot , Serge Kinkingnéhun
Journal of Alzheimer's Disease, 2010, 22 (1), pp.285-94. ⟨10.3233/JAD-2010-091150⟩
Article dans une revue hal-00805385v1

Distinct structural changes underpin clinical phenotypes in patients with Gilles de la Tourette syndrome

Yulia Worbe , Emilie Gerardin , Andreas Hartmann , Romain Valabrégue , Marie Chupin
Brain - A Journal of Neurology , 2010, 133 (Pt 12), pp.3649-60. ⟨10.1093/brain/awq293⟩
Article dans une revue hal-00805386v1
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Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging

Emilie Gerardin , Gaël Chételat , Marie Chupin , Rémi Cuingnet , Béatrice Desgranges
NeuroImage, 2009, 47 (4), pp.1476-86. ⟨10.1016/j.neuroimage.2009.05.036⟩
Article dans une revue hal-00805434v1

Support vector machine-based classification of Alzheimer's disease from whole-brain anatomical MRI

Benoît Magnin , Lilia Mesrob , Serge Kinkingnéhun , Mélanie Pélégrini-Issac , Olivier Colliot
Neuroradiology, 2009, 51 (2), pp.73-83. ⟨10.1007/s00234-008-0463-x⟩
Article dans une revue hal-00805439v1

Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: method and validation

Marie Chupin , A. Hammers , R. S. N. Liu , Olivier Colliot , J. Burdett
NeuroImage, 2009, 46 (3), pp.749-61. ⟨10.1016/j.neuroimage.2009.02.013⟩
Article dans une revue hal-00805390v1

Can voxel based morphometry, manual segmentation and automated segmentation equally detect hippocampal volume differences in acute depression?

Loretxu Bergouignan , Marie Chupin , Yvonne Czechowska , Serge Kinkingnéhun , Cédric Lemogne
NeuroImage, 2009, 45 (1), pp.29-37. ⟨10.1016/j.neuroimage.2008.11.006⟩
Article dans une revue hal-00805422v1

Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI

Marie Chupin , Emilie Gérardin , Rémi Cuingnet , Claire Boutet , Louis Lemieux
Hippocampus, 2009, 19 (6), pp.579-87. ⟨10.1002/hipo.20626⟩
Article dans une revue hal-00805428v1
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3D brain tumor segmentation in MRI using fuzzy classification, symmetry analysis and spatially constrained deformable models

Hassan Khotanlou , Olivier Colliot , Jamal Atif , Isabelle Bloch
Fuzzy Sets and Systems, 2009, 160 (10), ⟨10.1016/j.fss.2008.11.016⟩
Article dans une revue hal-01251278v1

Basal temporal sulcal morphology in healthy controls and patients with temporal lobe epilepsy

H. Kim , N. Bernasconi , B. Bernhardt , Olivier Colliot , A. Bernasconi
Neurology, 2008, 70 (22 Pt 2), pp.2159-65. ⟨10.1212/01.wnl.0000313150.62832.79⟩
Article dans une revue hal-00805437v1
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Using anatomical knowledge expressed as fuzzy constraints to segment the heart in CT images

A. Moreno , C.M. Takemura , Olivier Colliot , O. Camara , Isabelle Bloch
Pattern Recognition, 2008, 41 (8), ⟨10.1016/j.patcog.2008.01.020⟩
Article dans une revue hal-01251275v1
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Discrimination between Alzheimer disease, mild cognitive impairment, and normal aging by using automated segmentation of the hippocampus.

Olivier Colliot , Gaël Chételat , Marie Chupin , Béatrice Desgranges , Benoît Magnin
Radiology, 2008, 248 (1), pp.194-201. ⟨10.1148/radiol.2481070876⟩
Article dans une revue inserm-00383265v1
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L'apport de la neuroimagerie dans la maladie d'Alzheimer

Olivier Colliot , Marie Chupin , Marie Sarazin , Marie-Odile Habert , Didier Dormont
PSN - psychiatrie, sciences humaines, neurosciences, 2008
Article dans une revue hal-01413895v1

Explicit incorporation of prior anatomical information into a nonrigid registration of thoracic and abdominal CT and 18-FDG whole-body emission PET images.

Oscar Camara , Gaspar Delso , Olivier Colliot , Antonio Moreno-Ingelmo , Isabelle Bloch
IEEE Transactions on Medical Imaging, 2007, 26 (2), pp.164-78
Article dans une revue hal-01366555v1
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Individual voxel-based analysis of gray matter in focal cortical dysplasia.

Olivier Colliot , Neda Bernasconi , Najmeh Khalili , Samson B Antel , Véronique Naessens
NeuroImage, 2006, 29 (1), pp.162-71. ⟨10.1016/j.neuroimage.2005.07.021⟩
Article dans une revue hal-01259130v1
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Integration of fuzzy spatial relations in deformable models - application to brain MRI segmentation

Olivier Colliot , Oscar Camara , Isabelle Bloch
Pattern Recognition, 2006, 39 (8), pp.1401-1414. ⟨10.1016/j.patcog.2006.02.022⟩
Article dans une revue hal-00878443v1
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Segmentation of focal cortical dysplasia lesions on MRI using level set evolution

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos
NeuroImage, 2006, 32 (4), pp.1621-1630. ⟨10.1016/j.neuroimage.2006.04.225⟩
Article dans une revue inria-00614998v1

In vivo profiling of focal cortical dysplasia on high-resolution MRI with computational models.

Olivier Colliot , Samson B Antel , Veronique B Naessens , Neda Bernasconi , Andrea Bernasconi
Epilepsia, 2006, 47 (1), pp.134-42
Article dans une revue hal-01259128v1
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On the ternary spatial relation "Between"

Isabelle Bloch , Olivier Colliot , Roberto M. Cesar
IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics, 2006, 36 (2), pp.312-327. ⟨10.1109/TSMCB.2005.857095⟩
Article dans une revue hal-01251251v1
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Fusion of spatial relationships for guiding recognition, example of brain structure recognition in 3D MRI

Isabelle Bloch , Olivier Colliot , Oscar Camara , Thierry Géraud
Pattern Recognition Letters, 2005, 26 (4), pp.449-457. ⟨10.1016/j.patrec.2004.08.009⟩
Article dans une revue hal-01251245v1
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Un modèle déformable intégrant des relations spatiales pour la segmentation de structures cérébrales

Olivier Colliot , Oscar Camara , Isabelle Bloch
Revue I3 - Information Interaction Intelligence, 2005, 5 (1), pp.29-58
Article dans une revue hal-01413894v1
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Approximate reflectional symmetries of fuzzy objects with an application in model-based object recognition

Olivier Colliot , Alexander V. Tuzikov , Roberto M. Cesar , Isabelle Bloch
Fuzzy Sets and Systems, 2004, 147 (1), pp.141-163. ⟨10.1016/j.fss.2003.07.003⟩
Article dans une revue hal-01251244v1
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Computational modeling of thoracic and abdominal anatomy using spatial relationships for image segmentation

Oscar Camara , Olivier Colliot , Isabelle Bloch
Real Time Imaging, 2004, 10 (4), pp.263-273. ⟨10.1016/j.rti.2004.05.005⟩
Article dans une revue hal-01251241v1
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Evaluation of the symmetry plane in 3D MR brain images

Alexander V. Tuzikov , Olivier Colliot , Isabelle Bloch
Pattern Recognition Letters, 2003, 24 (14), pp.2219-2233. ⟨10.1016/S0167-8655(03)00049-7⟩
Article dans une revue hal-01227827v1
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Recent advances in the open-source ClinicaDL software for reproducible neuroimaging with deep learning

Ravi Hassanaly , Camille Brianceau , Mauricio Diaz , Sophie Loizillon , Elina Thibeau-Sutre
SPIE Medical Imaging, Feb 2024, San Diego, United States
Communication dans un congrès hal-04419141v1
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Border irregularity loss for automated segmentation of primary brain lymphomas on post-contrast MRI

Rosana El Jurdi , Lucia Nichelli , Agusti Alentorn , Ghislain Vaillant , Guanghui Fu
SPIE Medical Imaging 2024, Feb 2024, San Diego, CA, United States
Communication dans un congrès hal-04454942v1
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Generating PET-derived maps of myelin content from clinical MRI using curricular discriminator training in generative adversarial networks

Théodore Soulier , Mariem Hamzaoui , Milena Sales Pitombeira , Daniele De Paula Faria , Arya Yazdan-Panah
SPIE Medical Imaging, Feb 2024, San Diego, United States
Communication dans un congrès hal-04362506v1
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Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI

Sophie Loizillon , Simona Bottani , Aurélien Maire , Sebastian Stroer , Didier Dormont
SPIE Medical Imaging 2023: Image Processing, Feb 2023, San Diego, United States
Communication dans un congrès hal-03831746v2
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How precise are performance estimates for typical medical image segmentation tasks?

Rosana El Jurdi , Olivier Colliot
IEEE International Symposium on Biomedical Imaging (ISBI 2023), IEEE, Apr 2023, Cartagena de Indias, Colombia
Communication dans un congrès hal-04104891v1
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Introducing Soft Topology Constraints in Deep Learning-based Segmentation using Projected Pooling Loss

Guanghui Fu , Rosana El Jurdi , Lydia Chougar , Didier Dormont , Romain Valabregue
SPIE Medical Imaging 2023, Feb 2023, San Diego, United States
Communication dans un congrès hal-03832309v2
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Unsupervised anomaly detection in 3D brain FDG PET: A benchmark of 17 VAE-based approaches

Ravi Hassanaly , Camille Brianceau , Olivier Colliot , Ninon Burgos
Deep Generative Models workshop at the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Oct 2023, Vancouver, Canada
Communication dans un congrès hal-04185304v1
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From Nipype to Pydra: a Clinica story

Ghislain Vaillant , Nicolas Gensollen , Matthieu Joulot , Omar El-Rifai , Mauricio Diaz
OHBM 2023 - Annual meeting of the Organization for Human Brain Mapping, Jul 2023, Montreal, Canada
Communication dans un congrès hal-04278898v1
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Interpretable automatic detection of incomplete hippocampal inversions using anatomical criteria

Lisa J Hemforth , Claire Cury , Vincent Frouin , Sylvane Desrivières , Antoine Grigis
SPIE Medical Imaging 2023, Feb 2023, San Diego (California), United States. pp.1-7, ⟨10.1117/12.2651427⟩
Communication dans un congrès hal-03994348v1
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How can data augmentation improve attribution maps for disease subtype explainability?

Elina Thibeau-Sutre , Jelmer M Wolterink , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03966737v1
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Simulation-based evaluation framework for deep learning unsupervised anomaly detection on brain FDG PET

Ravi Hassanaly , Simona Bottani , Benoît Sauty , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03835015v2
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Semi-supervised Domain Adaptation for Automatic Quality Control of FLAIR MRIs in a Clinical Data Warehouse

Sophie Loizillon , Olivier Colliot , Lydia Chougar , Sebastian Stroer , Yannick Jacob
DART 2023 - 5th MICCAI Workshop on Domain Adaptation and Representation Transfer, Oct 2023, Vancouver (BC), Canada. pp.84-93, ⟨10.1007/978-3-031-45857-6_9⟩
Communication dans un congrès hal-04273997v1
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Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩
Communication dans un congrès hal-03478798v1
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Olivier Colliot , Ninon Burgos
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-04279014v1
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Advances in the Clinica software platform for clinical neuroimaging studies

Omar El Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-03728243v1
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MRI field strength predicts Alzheimer's disease: a case example of bias in the ADNI data set

Elina Thibeau-Sutre , Baptiste Couvy-Duchesne , Didier Dormont , Olivier Colliot , Ninon Burgos
ISBI 2022 - International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. ⟨10.1109/ISBI52829.2022.9761504⟩
Communication dans un congrès hal-03542213v1
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Axial multi-layer perceptron architecture for automatic segmentation of choroid plexus in multiple sclerosis

Marius Schmidt-Mengin , Vito A. G. Ricigliano , Benedetta Bodini , Emanuele Morena , Annalisa Colombi
SPIE Medical Imaging 2022, Feb 2022, San Diego, United States. ⟨10.1117/12.2612912⟩
Communication dans un congrès hal-03343735v1
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A multimodal variational autoencoder for estimating progression scores from imaging and microRNA data in rare neurodegenerative diseases

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Vincent Anquetil , Daisy Rinaldi
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, California, United States. pp.376-382, ⟨10.1117/12.2607250⟩
Communication dans un congrès hal-03576117v1

Highlight on Computing disease progression scores using multimodal variational autoencoders trained with neuroimaging and microRNA data

Virgilio Kmetzsch , Emmanuelle Becker , Dario Saracino , Vincent Anquetil , Daisy Rinaldi
Jobim 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Communication dans un congrès hal-03877191v1
Image document

Clinica: an open-source software platform for reproducible clinical neuroscience studies

Omar El-Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
MRI Together 2021 - A global workshop on Open Science and Reproducible MR Research, Dec 2021, Online, France
Communication dans un congrès hal-03513920v1
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Intensity based Regions Of Interest (ROIs) preselection followed by Convolutional Neuronal Network (CNN) based segmentation for new lesions detection in Multiple Sclerosis

Mariem Hamzaoui , Théodore Soulier , Arya Yazdan-Panah , Marius Schmidt- Mengin , Olivier Colliot
MICCAI 2021 MSSEG2 - 24th International Conference on Medical Image Computing and Computer Assisted Intervention - Challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure — MICCAI-MSSEG-2, Sep 2021, Strasbourg, France
Communication dans un congrès hal-03826791v1
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Association and prediction of phenotypic traits from neuroimaging data using a multi-component mixed model excluding the target vertex

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn E Kemper , Julia Sidorenko , Naomi R Wray
SPIE Medical Imaging 2021, Feb 2021, Virtual, United States. pp.10, ⟨10.1117/12.2581022⟩
Communication dans un congrès hal-03174495v1
Image document

Segmentation of new multiple sclerosis lesions on FLAIR MRI using online hard example mining

Marius Schmidt-Mengin , Arya Yazdan-Panah , Théodore Soulier , Mariem Hamzaoui , Nicholas Ayache
MICCAI-MSSEG-2 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention - challenge on multiple sclerosis new lesions segmentation challenge using a data management and processing infrastructure, Sep 2021, Strasbourg, France
Communication dans un congrès hal-03826787v1
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A step-wise criterion to determine target control centrality in the aging brain network

Giulia Bassignana , Olivier Colliot , Fabrizio de Vico Fallani
NetSci 2020 - International School and Conference on Network Science, Sep 2020, Rome / Virtual, Italy
Communication dans un congrès hal-03022301v1
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Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set

Alexandre Bône , Benoît Martin , Maxime Louis , Olivier Colliot , Stanley Durrleman
VPH 2020 - Virtual Physiological Human 2020, Aug 2020, Paris / Virtual, France
Communication dans un congrès hal-02979176v1
Image document

Learning joint shape and appearance representations with metamorphic auto-encoders

Alexandre Bône , Paul Vernhet , Olivier Colliot , Stanley Durrleman​
MICCAI 2020 - 23rd International Conference on Image Computing and Computer Assisted Interventions, Oct 2020, Lima / Virtual, Peru
Communication dans un congrès hal-03136537v1
Image document

Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨10.1117/12.2548952⟩
Communication dans un congrès hal-02370532v3
Image document

New longitudinal and deep learning pipelines in the Clinica software platform

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jorge Samper-González , Adam Wild
OHBM 2020 - Annual meeting of the Organization for Human Brain Mapping, Jun 2020, Montreal / Virtual, Canada
Communication dans un congrès hal-02549242v1
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Multilevel Survival Analysis with Structured Penalties for Imaging Genetics data

Pascal Lu , Olivier Colliot
SPIE Medical Imaging Conference, Feb 2020, Houston, United States
Communication dans un congrès hal-02473825v1
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Linear Mixed Models Minimise False Positive Rate and Enhance Precision of Mass Univariate Vertex-Wise Analyse of Grey-Matter

Baptiste Couvy-Duchesne , Futao Zhang , Kathryn E Kemper , Julia Sidorenko , Naomi R. Wray
ISBI 2020 - International Symposium on Biomedical Imaging, Apr 2020, Iowa City / Virtual, United States
Communication dans un congrès hal-02477130v1
Image document

Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set

Alexandre Bône , Benoît Martin , Maxime Louis , Olivier Colliot , Stanley Durrleman
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Roma, Italy
Communication dans un congrès hal-02090275v1
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Predicting Impulse Control Disorders in Parkinson's Disease: A Challenging Task

Johann Faouzi , Samir Bekadar , Olivier Colliot , Jean-Christophe Corvol
International Congress of Parkinson's Disease and Movement Disorders, Sep 2019, Nice, France
Communication dans un congrès hal-02315533v1
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Prediction of future cognitive scores and dementia onset in Mild Cognitive Impairment patients

Manon Ansart , Ninon Burgos , Olivier Colliot , Didier Dormont , Stanley Durrleman
OHBM 2019 - Organization for Human Brain Mapping Conference, Jun 2019, Rome, Italy
Communication dans un congrès hal-02098427v2
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Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou
SPIE Medical Imaging 2019, Feb 2019, San Diego, United States. ⟨10.1117/12.2512430⟩
Communication dans un congrès hal-02025880v2
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Auto-encoding meshes of any topology with the current-splatting and exponentiation layers

Alexandre Bône , Olivier Colliot , Stanley Durrleman
Geometry Meets Deep Learning @ ICCV 2019, Oct 2019, Séoul, South Korea
Communication dans un congrès hal-02087586v2
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Conciliation of process description and molecular interaction networks using logical properties of ontology

Vincent J. Henry , Giulia Bassignana , Violetta Zujovic , Fabrizio de Vico Fallani , Olivier Dameron
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Communication dans un congrès hal-02301702v1
Image document

How serious is data leakage in deep learning studies on Alzheimer's disease classification?

Junhao Wen​ , Elina Thibeau--Sutre​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​
2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02105133v2
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Learning low-dimensional representations of shape data sets with diffeomorphic autoencoders

Alexandre Bône , Maxime Louis , Olivier Colliot , Stanley Durrleman
IPMI 2019 : Information Processing in Medical Imaging, Jun 2019, Hong-Kong, China
Communication dans un congrès hal-01963736v2
Image document

Beware of feature selection bias! Example on Alzheimer's disease classification from diffusion MRI

Junhao Wen​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​ , Stanley Durrleman​
2019 OHBM Annual Meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02105134v2
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Deciphering the progression of PET alterations using surface-based spatiotemporal modeling

Igor Koval , Arnaud Marcoux , Ninon Burgos , Stéphanie Allassonnière , Olivier Colliot
OHBM 2019 - Annual meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02134909v1

Target controllability in genetic networks of macrophage activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
Netsci 2019, May 2019, Burlington, United States
Communication dans un congrès hal-02314001v1
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Predicting progression to Alzheimer’s disease from clinical and imaging data: a reproducible study

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou
OHBM 2019 - Organization for Human Brain Mapping Annual Meeting 2019, Jun 2019, Rome, Italy
Communication dans un congrès hal-02142315v1
Image document

New advances in the Clinica software platform for clinical neuroimaging studies

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jérémy Guillon , Jorge Samper-González
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩
Communication dans un congrès hal-02132147v2
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Comparison of DTI Features for the Classification of Alzheimer's Disease: A Reproducible Study

Junhao Wen , Jorge Samper-Gonzalez , Simona Bottani , Alexandre Routier , Ninon Burgos
OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01758206v3

Conciliation of medicine systems disease maps and other molecular interaction networks using logical properties of ontology

Vincent J. Henry , Giulia Bassignana , Violetta Zujovic , Fabrizio de Vico Fallani , Olivier Dameron
Data Integration in the Life Sciences 5DILS 2018), Nov 2018, Hannover, Germany
Communication dans un congrès hal-02301626v1
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FLAIR MR Image Synthesis By Using 3D Fully Convolutional Networks for Multiple Sclerosis

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Olivier Colliot
ISMRM-ESMRMB 2018 - Joint Annual Meeting, Jun 2018, Paris, France. pp.1-6
Communication dans un congrès hal-01723070v1
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A pipeline for the analysis of 18F-FDG PET data on the cortical surface and its evaluation on ADNI

Arnaud Marcoux , Ninon Burgos , Anne Bertrand , Alexandre Routier , Junhao Wen
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01757646v1
Image document

Identification of Driver Nodes in Genetic Networks Regulating Macrophage Activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
Conference on Complex Systems - CSS, Sep 2018, Thessaloniki, Greece
Communication dans un congrès hal-01967797v1
Image document

Reproducible evaluation of Alzheimer's Disease classification from MRI and PET data

Jorge Samper-Gonzalez , Simona Bottani , Ninon Burgos , Sabrina Fontanella , Pascal Lu
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01761666v1
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Learning distributions of shape trajectories from longitudinal datasets: a hierarchical model on a manifold of diffeomorphisms

Alexandre Bône , Olivier Colliot , Stanley Durrleman
CVPR 2018 - Computer Vision and Pattern Recognition 2018, Jun 2018, Salt Lake City, United States
Communication dans un congrès hal-01744538v3
Image document

Using diffusion MRI for classification and prediction of Alzheimer's Disease: a reproducible study

Junhao Wen , Jorge Samper-Gonzalez , Simona Bottani , Alexandre Routier , Ninon Burgos
AAIC 2018 - Alzheimer's Association International Conference, Jul 2018, Chicago, United States
Communication dans un congrès hal-01758167v2
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Three simple ideas for predicting progression to Alzheimer's disease

Jorge Samper-Gonzalez , Ninon Burgos , Simona Bottani , Marie-Odile Habert , Theodoros Evgeniou
8th International Workshop on Pattern Recognition in Neuroimaging, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01891996v1
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Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants

Alexandre Routier , Marie-Odile Habert , Anne Bertrand , Aurélie Kas , Pierre-Maxime David
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore
Communication dans un congrès hal-01764289v1

Identification of driver nodes in genetic networks regulating macrophage activation

Giulia Bassignana , Jennifer Fransson , Olivier Colliot , Violetta Zujovic , Fabrizio de Vico Fallani
International School and Conference on Network Science (Netsci) 2018, Jun 2018, Paris, France
Communication dans un congrès hal-02315609v1
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Converting Alzheimer's disease map into a heavyweight ontology: a formal network to integrate data

Vincent J. Henry , Ivan Moszer , Olivier Dameron , Marie-Claude Potier , Martin Hofmann-Apitius
DILS 2018 - 13th International Conference on Data Integration in the Life Sciences, Nov 2018, Hannover, Germany. pp.1-9
Communication dans un congrès hal-01917742v1
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Integrating ontological representation and reasoning into a disease map: application to Alzheimer's disease

Vincent J. Henry , Ivan Moszer , Olivier Dameron , Marie-Claude Potier , Martin Hofmann-Apitius
DMCM 2018 - 3rd Disease Maps Community Meeting, Jun 2018, Paris, France. pp.1-2
Communication dans un congrès hal-01873474v1
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Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Jérémy Guillon , Ninon Burgos , Jorge Samper-Gonzalez , Junhao Wen
Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore
Communication dans un congrès hal-01760658v1
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NODDI Highlights Promising New Markers In Presymptomatic C9orf72 Carriers

Junhao Wen , Hui Zhang , Daniel Alexander , Stanley Durrleman , Alexandre Routier
OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore
Communication dans un congrès hal-01758137v1
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Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training

Wen Wei , Emilie Poirion , Benedetta Bodini , Stanley Durrleman , Nicholas Ayache
MICCAI 2018 – 21st International Conference On Medical Image Computing & Computer Assisted Intervention, Sep 2018, Granada, Spain. ⟨10.1007/978-3-030-00931-1_59⟩
Communication dans un congrès hal-01810822v1
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Prediction of amyloidosis from neuropsychological and MRI data for cost effective inclusion of pre-symptomatic subjects in clinical trials

Manon Ansart , Stéphane Epelbaum , Geoffroy Gagliardi , Olivier Colliot , Didier Dormont
Multimodal Learning for Clinical Decision Support, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01578422v1
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Multilevel Modeling with Structured Penalties for Classification from Imaging Genetics data

Pascal Lu , Olivier Colliot
3rd MICCAI Workshop on Imaging Genetics (MICGen 2017), Sep 2017, Québec City, Canada. pp.230-240
Communication dans un congrès hal-01578441v1
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Selection of amyloid positive pre-symptomatic subjects using automatic analysis of neuropsychological and MRI data for cost effective inclusion procedures in clinical trials

Manon Ansart , Stéphane Epelbaum , Olivier Colliot , Didier Dormont , Bruno Dubois
Clinical Trials for Alzheimer's Disease, Nov 2017, Boston, United States. pp.295
Communication dans un congrès hal-02098434v2
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Multi-modal analysis of genetically-related subjects using SIFT descriptors in brain MRI

Kuldeep Kumar , Laurent Chauvin , Mathew Toews , Olivier Colliot , Christian Desrosiers
Workshop on Computational Diffusion MRI, CDMRI 2017, MICCAI Workshop, Sep 2017, Quebec, Canada
Communication dans un congrès hal-01589647v1
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Prediction of the progression of subcortical brain structures in Alzheimer's disease from baseline

Alexandre Bône , Maxime Louis , Alexandre Routier , Jorge Samper , Michael Bacci
6th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01563587v2
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Diagnosis of Alzheimer’s Disease Through Identification of Abnormality Patterns in FDG PET Data

Ninon Burgos , Jorge Samper-González , Anne Bertrand , Marie-Odile Habert , Sébastien Ourselin
30th Annual Congress of the European Association of Nuclear Medicine (EANM), Oct 2017, Vienna, Austria. pp.253 - 254, ⟨10.1007/s00259-017-3822-1⟩
Communication dans un congrès hal-01632509v1
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White Matter Fiber Segmentation Using Functional Varifolds

Kuldeep Kumar , Pietro Gori , Benjamin Charlier , Stanley Durrleman , Olivier Colliot
MFCA 2017 - 6th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Sep 2017, Québec, Canada. pp.92-100
Communication dans un congrès hal-01589649v1
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Yet Another ADNI Machine Learning Paper? Paving The Way Towards Fully-reproducible Research on Classification of Alzheimer's Disease

Jorge Samper-Gonzalez , Ninon Burgos , Sabrina Fontanella , Hugo Bertin , Marie-Odile Habert
Machine Learning in Medical Imaging 2017, Sep 2017, Quebec City, Canada. pp.8
Communication dans un congrès hal-01578479v1
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Early Diagnosis of Alzheimer’s Disease Using Subject-Specific Models of FDG-PET Data

Ninon Burgos , Jorge Samper-González , Jorge M. Cardoso , Stanley Durrleman , Sébastien Ourselin
AAIC 2017 - Alzheimer's Association International Conference, Jul 2017, London, United Kingdom. pp.1-2, ⟨10.1016/j.jalz.2017.06.1618⟩
Communication dans un congrès hal-01621383v1

Accuracy of MRI classification algorithms in a tertiary memory center clinical routine cohort

Alexandre Morin , Jorge Samper-Gonzales , Anne Bertrand , Enrica Cavedo , Simone Lista
AAIC 2017 - Alzheimer's Association International Conference, Jul 2017, London, United Kingdom. pp.P772-P774, ⟨10.1016/j.jalz.2017.06.1034⟩
Communication dans un congrès hal-02192444v1
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Étude quantitative des anomalies de signal flair de la substance blanche dans les pathologies neurodégénératives

Sébastian Ströer , Ludovic Fillon , Stéphane Epelbaum , Marc Teichmann , Agnès Michon
SFNR 2017 - 44ème Congrès de la Société Française de Neuroradiologie, Mar 2017, Paris, France. pp.1, ⟨10.1016/j.neurad.2017.01.011⟩
Communication dans un congrès hal-01562645v1
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Statistical learning of spatiotemporal patterns from longitudinal manifold-valued networks

Igor Koval , Jean-Baptiste Schiratti , Alexandre Routier , Michael Bacci , Olivier Colliot
Medical Image Computing and Computer Assisted Intervention, Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01540828v1
Image document

Individual Analysis of Molecular Brain Imaging Data Through Automatic Identification of Abnormality Patterns

Ninon Burgos , Jorge Samper-González , Anne Bertrand , Marie-Odile Habert , Sébastien Ourselin
Computational Methods for Molecular Imaging - [MICCAI 2017 Satellite Workshop], Sep 2017, Quebec City, Canada
Communication dans un congrès hal-01567343v1

The INSIGHT cohort: baseline analysis of structural MR imaging in asymptomatic subjects at risk for Alzheimer's disease

Anne Bertrand , Stephane Epelbaum , Marie-Odile Habert , Harald Hampel , Hovagim Bakardjian
AAIC, Jul 2016, Toronto, Canada. ⟨10.1016/j.jalz.2016.06.612⟩
Communication dans un congrès hal-01439571v1

Suspected non-alzheimer disease pathophysiology (SNAP) categorization in the insight cohort

Stephane Epelbaum , Anne Bertrand , Aline Mendes , Marcel Levy , Geoffroy Gagliardi
AAIC, 2016, Toronto, Canada. pp.P1073 - P1074, ⟨10.1016/j.jalz.2016.06.2246⟩
Communication dans un congrès hal-01562646v1
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Learning spatiotemporal trajectories from manifold-valued longitudinal data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Neural Information Processing Systems, Dec 2015, Montréal, Canada
Communication dans un congrès hal-01163373v3
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Mixed-effects model for the spatiotemporal analysis of longitudinal manifold-valued data

Jean-Baptiste Schiratti , Stéphanie Allassonnière , Olivier Colliot , Stanley Durrleman
5th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany
Communication dans un congrès hal-01245905v1

Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol

Marie Chupin , Johanne Germain , Linda Marrakchi-Kacem , Emilie Gerardin , Claire Boutet
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188838v1
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Multi-template approaches for segmenting the hippocampus: the case of the SACHA software

Ludovic Fillon , Olivier Colliot , Dominique Hasboun , Bruno Dubois , Didier Dormont
Organization for Human Brain Mapping (OHBM), Jun 2015, Honolulu, United States. pp.5
Communication dans un congrès hal-01188794v1

Imaging of hippocampal inner structure at 7T: robust in-vivo acquisition protocol

Linda Marrakchi-Kacem , Alexandre Vignaud , Julien Sein , Johanne Germain , Stéphane Epelbaum
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188843v1

Statistical shape analysis of large datasets using diffeomorphic iterative centroids

Claire Cury , Joan Glaunés , Roberto Toro , Gunter D Schumann , Vincent Frouin
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Communication dans un congrès hal-01212226v1
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A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Alexandre Routier , Olivier Colliot , Stanley Durrleman
IPMI - Information Processing in Medical Imaging , Sebastien Ourselin, Daniel C. Alexander, Carl-Fredrik Westin, M. Jorge Cardoso, Jun 2015, Sleat, Isle of Skye, United Kingdom. pp.564-575
Communication dans un congrès hal-01163213v1
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Unified analysis of shape and structural connectivity of neural pathways

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Alexandre Routier
Organisation for Human Brain Mapping, 2015, Honolulu, United States
Communication dans un congrès hal-01187461v1
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Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects

Claire Cury , Roberto Toro , Fanny Cohen , Amel Mhaya , Dominique Hasboun
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Communication dans un congrès hal-01212219v1
Image document

Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Alexandre Routier
IPMI - Information Processing in Medical Imaging, Jun 2015, Isle of Skye, United Kingdom. pp.275-287, ⟨10.1007/978-3-319-19992-4_21⟩
Communication dans un congrès hal-01142628v1

Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI

Emilie Gérardin , Joan Alexis Glaunès , Marie Chupin , Ana B. Graciano Fouquier , Kevin Roussel
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Communication dans un congrès hal-01188833v1
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A Prototype Representation to Approximate White Matter Bundles with Weighted Currents

Pietro Gori , Olivier Colliot , Linda Marrakchi-Kacem , Yulia Worbe , Fabrizio de Vico Fallani
MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2014, Boston, United States
Communication dans un congrès hal-01010702v1

Slab registration as a first step towards hippocampus subparts high resolution imaging at 7T

Linda Marrakchi-Kacem , Alexandre Vignaud , Johanne Germain , Julien Sein , Thomas R Henry
ISMRM 2014 - Annual Meeting of the International Society for Magnetic Resonance in Medicine, May 2014, Milan, Italy
Communication dans un congrès hal-01114137v1

Incidence and characterization of supratentorial FLAIR hyperintenstities in patients with sporadic and genetic frontotemporal dementia

Anne Bertrand , Fatima Ameur , Paola Caroppo , Didier Dormont , Alexis Brice
AAIC 2014 - Alzheimer’s Association International Conference, Jul 2014, Copenhagen, Denmark
Communication dans un congrès hal-01114135v1

Improved accuracy of the diagnosis of early Alzheimer’s disease using combined measures of hippocampal volume and sulcal morphology

Lorraine Hamelin , Leonardo Cruz de Souza , Fabian Corlier , Hélène Corne , Marie Chupin
AAN 2014 - Annual Meeting of the American Academy of Neurology, Apr 2014, Philadelphia, United States
Communication dans un congrès hal-01114138v1
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Evaluation of morphometric descriptors of deep brain structures for the automatic classification of patients with Alzheimer’s disease, mild cognitive impairment and elderly controls

Alexandre Routier , Pietro Gori , Ana B. Graciano Fouquier , Sophie Lecomte , Olivier Colliot
MICCAI Workshop, Sep 2014, Cambridge, United States. pp.8
Communication dans un congrès hal-01099081v1

Genetic Frontotemporal Dementia with TDP-43 Inclusions:Distinct Radiological Phenotypes between Patients with PGRN and C9ORF72 Mutations

Anne Bertrand , Fatima Ameur , Paola Caroppo , Didier Dormont , Alexis Brice
RSNA, Nov 2014, Chicago, United States
Communication dans un congrès hal-01439623v1

Multimodal neuroimaging study in presymptomatic GRN mutations carriers

Paola Caroppo , Marie-Odile Habert , Stanley Durrleman , Hugo Bertin , Alexandre Routier
9th International Conference on Frontotemporal Dementias (ICFTD), Oct 2014, Vancouver, Canada
Communication dans un congrès hal-01114134v1
Image document

Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid

Claire Cury , Joan Alexis Glaunès , Marie Chupin , Olivier Colliot
MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44
Communication dans un congrès hal-01050590v1
Image document

Towards joint morphometry of white matter tracts and gray matter surfaces

Pietro Gori , Olivier Colliot , Yulia Worbe , Linda Marrakchi-Kacem , Sophie Lecomte
Human Brain Mapping, 2013, Seattle, United States
Communication dans un congrès hal-00816138v1

Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents

Claire Cury , Joan Alexis Glaunès , Olivier Colliot
GSI 2013 - First International Conference Geometric Science of Information, Aug 2013, Paris, France. pp.103-111, ⟨10.1007/978-3-642-40020-9_10⟩
Communication dans un congrès hal-00857440v1
Image document

Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes

Pietro Gori , Olivier Colliot , Yulia Worbe , Linda Marrakchi-Kacem , Sophie Lecomte
MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. pp.267-274, ⟨10.1007/978-3-642-40811-3_34⟩
Communication dans un congrès hal-01188791v1

Segmentation of white matter hyperintensities: a comparison of automatic methods on multicentre data

Ludovic Fillon , Thomas Samaille , Eric Jouvent , Hugues Chabriat , Didier Dormont
OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Beijing, China
Communication dans un congrès hal-00817392v1

Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability

Thomas Samaille , Olivier Colliot , Rémi Cuingnet , Eric Jouvent , Hugues Chabriat
SPIE 2012 - Symposium on Medical Imaging, Feb 2012, San Diego, United States. pp.1-9, ⟨10.1117/12.910268⟩
Communication dans un congrès hal-00817381v1
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Modelling morphological variability of the hippocampus using manifold learning and large deformations

Claire Cury , Joan Glaunès , Emilie Gerardin , Marie Chupin , Olivier Colliot
OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China
Communication dans un congrès hal-00816100v1

Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease

R. Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
MICCAI Workshop on Machine Learning in Medical Imaging, Sep 2011, Toronto, Canada. pp.201-208, ⟨10.1007/978-3-642-24319-6_25⟩
Communication dans un congrès hal-00712091v1
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T 1 mapping, AIF and Pharmacokinetic Parameter Extraction from Dynamic Contrast Enhancement MRI Data

Gilad Liberman , Yoram Louzoun , Olivier Colliot , Dafna Ben Bashat
MICCAI Workshop on Multimodal Brain Image Analysis MBIA 2011, 2011, Toronto, Canada. pp.76 - 83, ⟨10.1007/978-3-642-24446-9_10⟩
Communication dans un congrès hal-01439120v1

Automatic segmentation of age-related white matter changes on flair images: method and multicentre validation

Thomas Samaille , Olivier Colliot , Didier Dormont , Marie Chupin
ISBI 2011 - 8th IEEE International Symposium on Biomedical Imaging: from Nano to Macro, Mar 2011, Chicago, United States. pp.2014 - 2017, ⟨10.1109/ISBI.2011.5872807⟩
Communication dans un congrès hal-00817386v1

Automated segmentation of white matter lesions using FLAIR images.

Thomas Samaille , Olivier Colliot , Didier Dormont , Marie Chupin
OHBM 2010 - 16th International Conference on Functional Mapping of the Human Brain, Jun 2010, Barcelona, Spain
Communication dans un congrès hal-00817395v1
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Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome

Rémi Cuingnet , Charlotte Rosso , Stéphane Lehéricy , Didier Dormont , Habib Benali
Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010, 2010, Beijing, China. pp.316 - 323, ⟨10.1007/978-3-642-15705-9_39⟩
Communication dans un congrès hal-01439126v1
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Spatial and anatomical regularization of SVM for brain image analysis

Rémi Cuingnet , Marie Chupin , Habib Benali , Olivier Colliot
Neural Information Processing Systems NIPS 2010, 2010, Vancouver, Canada
Communication dans un congrès hal-01439123v1

DISCO: a coherent diffeomorphic framework for brain registration under exhaustive sulcal constraints

Guillaume Auzias , Joan Alexis Glaunès , Olivier Colliot , Perrot Matthieu , Jean-François Mangin
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, Sep 2009, United Kingdom. pp.730-738
Communication dans un congrès hal-00534432v1

Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints

Guillaume Auzias , Joan Alexis Glaunès , Arnaud Cachia , Pascal Cathier , Eric Bardinet
2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, France. pp.1127-1130
Communication dans un congrès hal-00534433v1

Improved segmentation of focal cortical dysplasia lesions on MRI using expansion towards cortical boundaries

Olivier Colliot , Tommaso Mansi , P. Besson , N. Bernasconi , A. Bernasconi
3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro (ISBI), 2006, Arlington, VA, USA, United States. pp.323-326
Communication dans un congrès inria-00615584v1

Segmentation of Focal Cortical Dysplasia Lesions Using a Feature-Based Level Set

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos
Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'05), 2005, Palm Springs (CA), USA, United States. pp.375-382, ⟨10.1007/1156646547⟩
Communication dans un congrès inria-00616015v1

A level set driven by MR features of focal cortical dysplasia for lesion segmentation

Olivier Colliot , Tommaso Mansi , N. Bernasconi , V. Naessens , D. Klironomos
Medical Image Understanding and Analysis (MIUA), 2005, no address, United States. pp.239-242
Communication dans un congrès inria-00616016v1
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Integration of fuzzy structural information in deformable models

Olivier Colliot , Oscar Camara-Rey , Isabelle Bloch
Information Processing and Management of Uncertainty IPMU 2004, 2004, Perugia, Italy
Communication dans un congrès hal-01930357v1
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3D nonlinear PET-CT image registration algorithm with constrained Free-Form Deformations

Oscar Camara , Olivier Colliot , Gaspar Delso , Isabelle Bloch
3rd IASTED International Conference on Visualization, Imaging, and Image Processing (VIIP 2003), 2003, Benalmadena, Spain
Communication dans un congrès hal-01930355v1
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Characterization of approximate plane symmetries for 3D fuzzy objects

Olivier Colliot , Isabelle Bloch , Alexander V Tuzikov
9th International Conference on Information Processing and Management of Uncertainty IPMU 2002), Jul 2002, Annecy, France. pp.1749-1756
Communication dans un congrès hal-01930352v1
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Brain symmetry plane computation in MR images using inertia axes and optimization

Alexander V Tuzikov , Olivier Colliot , Isabelle Bloch
16th International Conference on Pattern Recognition, Aug 2002, Québec, Canada. ⟨10.1109/ICPR.2002.1044783⟩
Communication dans un congrès hal-01930349v1
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
3IA Doctoral Workshop, Nov 2021, Toulouse, France
Poster de conférence hal-03423072v2
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Identification of unlabeled latent subtypes with saliency maps

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
ICM welcome days, Oct 2020, Paris (online), France
Poster de conférence hal-03365788v1
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Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
ICM days 2019, Jan 2020, Louan, France
Poster de conférence hal-03365775v1
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A log-logistic survival model from multimodal data for prediction of Alzheimer's Disease

Pascal Lu , Olivier Colliot
SAfJR 2019 - Survival Analysis for Junior Researchers, Apr 2019, Copenhague, Denmark
Poster de conférence hal-02430943v1
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How serious is data leakage in deep learning studies on Alzheimer’s disease classification?

Junhao Wen , Elina Thibeau-Sutre , Jorge Samper-Gonzalez , Alexandre M Routier , Simona Bottani
Organization for Human Brain Mapping (OHBM), Jun 2019, Roma, Italy
Poster de conférence hal-03365742v1
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On the genetic bases of incomplete hippocampal inversion: a genome-wide association study

Claire Cury , Marzia A Scelzi , Roberto Toro , Vincent Frouin , Eric Artiges
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1
Poster de conférence inserm-02074616v1
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Building disease progression models from longitudinal biomarkers

Clémentine Fourrier , Igor Koval , Simona Bottani , Olivier Colliot , Stanley M Durrleman
5th Annual Human Brain Project Summit, Oct 2017, Glasgow, United Kingdom
Poster de conférence hal-02466386v1
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Learning spatio-temporal trajectories from manifold-valued longitudinal data

Jean-Baptiste Schiratti , Stéphanie Allassonniere , Olivier Colliot , Stanley Durrleman
Neural Information Processing Systems, Dec 2015, Montréal, Canada. , Advances in Neural Information Processing Systems
Poster de conférence hal-01245909v1
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Machine Learning for Brain Disorders

Olivier Colliot
Olivier Colliot. Springer, 197, 2023, Neuromethods, 978-1-0716-3195-9. ⟨10.1007/978-1-0716-3195-9⟩
Ouvrages hal-04225627v1
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Machine learning for Parkinson’s disease and related disorders

Johann Faouzi , Olivier Colliot , Jean-Christophe Corvol
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_26⟩
Chapitre d'ouvrage hal-03830073v2
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Classic machine learning algorithms

Johann Faouzi , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03830094v4
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Evaluating machine learning models and their diagnostic value

Gaël Varoquaux , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03682454v5
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Deep learning: basics and convolutional neural networks (CNN)

Maria Vakalopoulou , Stergios Christodoulidis , Ninon Burgos , Olivier Colliot , Vincent Lepetit
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_3⟩
Chapitre d'ouvrage hal-03957224v2
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Reproducibility in machine learning for medical imaging

Olivier Colliot , Elina Thibeau-Sutre , Ninon Burgos
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03957240v2
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A non-technical introduction to machine learning

Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023
Chapitre d'ouvrage hal-03957125v3
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Interpretability of Machine Learning Methods Applied to Neuroimaging

Elina Thibeau-Sutre , Sasha Collin , Ninon Burgos , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_22⟩
Chapitre d'ouvrage hal-03615163v2
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Diffeomorphic Iterative Centroid Methods for Template Estimation on Large Datasets

Claire Cury , Joan Alexis Glaunès , Olivier Colliot
Frank Nielsen. Geometric Theory of Information, Chapter 10, Springer, pp.273-299, 2014, ⟨10.1007/978-3-319-05317-2_10⟩
Chapitre d'ouvrage hal-00939326v1
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Biomarqueurs IRM de la maladie d’Alzheimer : apport du traitement des images

Olivier Colliot
Tillement Jean-Paul; Hauw Jean-Jacques; Papadopoulos Vassilios. Vieillissement et démences : un défi médical, scientifique et socio-économique, Lavoisier, pp.25-37, 2014, Rapports de l’Académie Nationale de Médecine
Chapitre d'ouvrage hal-01098841v1