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Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


Centre de Recherche de l'Institut du Cerveau et de la Moelle épinière   

Journal articles30 documents

  • Aline Mendes, Anne Bertrand, Foudil Lamari, Olivier Colliot, Alexandre Routier, et al.. Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias. Neurology, American Academy of Neurology, 2018, 90 (12), pp.e1057 - e1065. ⟨10.1212/WNL.0000000000005165⟩. ⟨hal-01820415⟩
  • Lorraine Hamelin, Maxime Bertoux, Michel Bottlaender, Helene Corne, Julien Lagarde, et al.. Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease. Neurobiology of Aging, Elsevier, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩. ⟨hal-01254276⟩
  • Paola Caroppo, Marie-Odile Habert, Stanley Durrleman, Aurélie Funkiewiez, Vincent Perlbarg, et al.. Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?. Journal of Alzheimer's Disease, IOS Press, 2015, 47 (3), pp.751-9. ⟨10.3233/JAD-150270⟩. ⟨hal-01220380⟩
  • Pierre Besson, Vera Dinkelacker, Romain Valabregue, Lionel Thivard, Xavier Leclerc, et al.. Structural connectivity differences in left and right temporal lobe epilepsy. NeuroImage, Elsevier, 2014, pp.135-44. ⟨hal-01098831⟩
  • Paola Caroppo, Isabelle Le Ber, Agnès Camuzat, Fabienne Clot, Lionel Naccache, et al.. Extensive white matter involvement in patients with frontotemporal lobar degeneration: think progranulin. JAMA neurology, American Medical Association (imprimé) / 2014, 71 (12), pp.1562-6. ⟨hal-01439037⟩
  • Harald Hampel, Simone Lista, Stefan J Teipel, Francesco Garaci, Robert Nisticò, et al.. Perspective on future role of biological markers in clinical therapy trials of Alzheimer's disease: a long-range point of view beyond 2020. Biochemical Pharmacology, Elsevier, 2014, pp.426-49. ⟨hal-01098832⟩
  • Claire Boutet, Marie Chupin, Stéphane Lehéricy, Linda Marrakchi-Kacem, Stéphane Epelbaum, et al.. Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study. Neuroimage-Clinical, Elsevier, 2014, 5, pp.341-8. ⟨hal-01099185⟩
  • Leonardo Cruz de Souza, Marie Chupin, Maxime Bertoux, Stéphane Lehéricy, Bruno Dubois, et al.. Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?. Journal of Alzheimer's Disease, IOS Press, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩. ⟨hal-00815740⟩
  • Julien Lagarde, Romain Valabrègue, Jean-Christophe Corvol, Isabelle Le Ber, Olivier Colliot, et al.. The clinical and anatomical heterogeneity of environmental dependency phenomena. Journal of Neurology, Springer Verlag, 2013, 260 (9), pp.2262-70. ⟨10.1007/s00415-013-6976-1⟩. ⟨hal-00867487⟩
  • Hosung Kim, Marie Chupin, Olivier Colliot, Boris C Bernhardt, Neda Bernasconi, et al.. Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities. NeuroImage, Elsevier, 2012, 59 (4), pp.3178-3186. ⟨10.1016/j.neuroimage.2011.11.040⟩. ⟨hal-00790810⟩
  • Leonardo C de Souza, Marie Chupin, Foudil Lamari, Claude Jardel, Delphine Leclercq, et al.. CSF tau markers are correlated with hippocampal volume in Alzheimer's disease. Neurobiology of Aging, Elsevier, 2012, 33 (7), pp.1253-7. ⟨10.1016/j.neurobiolaging.2011.02.022⟩. ⟨hal-00795742⟩
  • Claire Boutet, Marie Chupin, Olivier Colliot, Marie Sarazin, Gurkan Mutlu, et al.. Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?. Neuroradiology, Springer Verlag, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩. ⟨hal-00790081⟩
  • Guillaume Dorothée, Michel Bottlaender, Edmond Moukari, Leonardo C de Souza, Renaud Maroy, et al.. Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease. Archives of Neurology -Chigago-, American Medical Association, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩. ⟨hal-00790083⟩
  • Rémi Cuingnet, Emilie Gerardin, Jérôme Tessieras, Guillaume Auzias, Stéphane Lehéricy, et al.. Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database. NeuroImage, Elsevier, 2011, 56 (2), pp.766-81. ⟨10.1016/j.neuroimage.2010.06.013⟩. ⟨hal-00795739⟩
  • Charlotte Rosso, Olivier Colliot, Romain Valabrègue, Sophie Crozier, Didier Dormont, et al.. Tissue at risk in the deep middle cerebral artery territory is critical to stroke outcome.. Neuroradiology, Springer Verlag, 2011, 53 (10), pp.763-71. ⟨10.1007/s00234-011-0916-5⟩. ⟨hal-00795756⟩
  • Rémi Cuingnet, Charlotte Rosso, Marie Chupin, Stéphane Lehéricy, Didier Dormont, et al.. Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome. Medical Image Analysis, Elsevier, 2011, 15 (5), pp.729-37. ⟨10.1016/j.media.2011.05.007⟩. ⟨hal-00795741⟩
  • Leonardo Cruz de Souza, Fabian Corlier, Marie-Odile Habert, Olga Uspenskaya, Renaud Maroy, et al.. Similar amyloid-β burden in posterior cortical atrophy and Alzheimer's disease. Brain - A Journal of Neurology , Oxford University Press (OUP), 2011, 134 (Pt 7), pp.2036-43. ⟨10.1093/brain/awr130⟩. ⟨hal-00795743⟩
  • Marie Chupin, Emilie Gérardin, Rémi Cuingnet, Eric Bardinet, Didier Dormont, et al.. Segmentation ciblée d’images IRM et maladie d’Alzheimer. IRBM, Elsevier Masson, 2011. ⟨hal-01413898⟩
  • Charlotte Rosso, Olivier Colliot, Christian Pires, Christine Delmaire, Romain Valabrègue, et al.. Early ADC changes in motor structures predict outcome of acute stroke better than lesion volume. Journal de Neuroradiologie / Journal of Neuroradiology, Elsevier Masson, 2011, 38 (2), pp.105-12. ⟨10.1016/j.neurad.2010.05.001⟩. ⟨hal-00805381⟩
  • Guillaume Auzias, Olivier Colliot, Joan Alexis Glaunès, Matthieu Perrot, Jean-François Mangin, et al.. Diffeomorphic brain registration under exhaustive sulcal constraints.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩. ⟨hal-00793675⟩
  • Marie Sarazin, Valérie Chauviré, Emilie Gerardin, Olivier Colliot, Serge Kinkingnéhun, et al.. The amnestic syndrome of hippocampal type in Alzheimer's disease: an MRI study. Journal of Alzheimer's Disease, IOS Press, 2010, 22 (1), pp.285-94. ⟨10.3233/JAD-2010-091150⟩. ⟨hal-00805385⟩
  • Yulia Worbe, Emilie Gerardin, Andreas Hartmann, Romain Valabrégue, Marie Chupin, et al.. Distinct structural changes underpin clinical phenotypes in patients with Gilles de la Tourette syndrome. Brain - A Journal of Neurology , Oxford University Press (OUP), 2010, 133 (Pt 12), pp.3649-60. ⟨10.1093/brain/awq293⟩. ⟨hal-00805386⟩
  • M. Chupin, A. Hammers, R. S. N. Liu, O. Colliot, J. Burdett, et al.. Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: method and validation. NeuroImage, Elsevier, 2009, 46 (3), pp.749-61. ⟨10.1016/j.neuroimage.2009.02.013⟩. ⟨hal-00805390⟩
  • Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, et al.. Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. NeuroImage, Elsevier, 2009, 47 (4), pp.1476-86. ⟨10.1016/j.neuroimage.2009.05.036⟩. ⟨hal-00805434⟩
  • Benoît Magnin, Lilia Mesrob, Serge Kinkingnéhun, Mélanie Pélégrini-Issac, Olivier Colliot, et al.. Support vector machine-based classification of Alzheimer's disease from whole-brain anatomical MRI. Neuroradiology, Springer Verlag, 2009, 51 (2), pp.73-83. ⟨10.1007/s00234-008-0463-x⟩. ⟨hal-00805439⟩
  • Loretxu Bergouignan, Marie Chupin, Yvonne Czechowska, Serge Kinkingnéhun, Cédric Lemogne, et al.. Can voxel based morphometry, manual segmentation and automated segmentation equally detect hippocampal volume differences in acute depression?. NeuroImage, Elsevier, 2009, 45 (1), pp.29-37. ⟨10.1016/j.neuroimage.2008.11.006⟩. ⟨hal-00805422⟩
  • Hassan Khotanlou, Olivier Colliot, Jamal Atif, Isabelle Bloch. 3D brain tumor segmentation in MRI using fuzzy classification, symmetry analysis and spatially constrained deformable models. Fuzzy Sets and Systems, Elsevier, 2009, 160 (10), ⟨10.1016/j.fss.2008.11.016⟩. ⟨hal-01251278⟩
  • Marie Chupin, Emilie Gérardin, Rémi Cuingnet, Claire Boutet, Louis Lemieux, et al.. Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI. Hippocampus, Wiley, 2009, 19 (6), pp.579-87. ⟨10.1002/hipo.20626⟩. ⟨hal-00805428⟩
  • H. Kim, N. Bernasconi, B. Bernhardt, O. Colliot, A. Bernasconi. Basal temporal sulcal morphology in healthy controls and patients with temporal lobe epilepsy. Neurology, American Academy of Neurology, 2008, 70 (22 Pt 2), pp.2159-65. ⟨10.1212/01.wnl.0000313150.62832.79⟩. ⟨hal-00805437⟩
  • A. Moreno, C.M. Takemura, O. Colliot, O. Camara, I. Bloch. Using anatomical knowledge expressed as fuzzy constraints to segment the heart in CT images. Pattern Recognition, Elsevier, 2008, 41 (8), ⟨10.1016/j.patcog.2008.01.020⟩. ⟨hal-01251275⟩

Conference papers17 documents

  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, et al.. Unified analysis of shape and structural connectivity of neural pathways. Organisation for Human Brain Mapping, 2015, Honolulu, Hawaii, United States. ⟨hal-01187461⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, et al.. Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms. IPMI - Information Processing in Medical Imaging, Jun 2015, Isle of Skye, United Kingdom. pp.275-287, ⟨10.1007/978-3-319-19992-4_21⟩. ⟨hal-01142628⟩
  • Marie Chupin, Johanne Germain, Linda Marrakchi-Kacem, Emilie Gerardin, Claire Boutet, et al.. Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188838⟩
  • Anne Bertrand, Fatima Ameur, Paola Caroppo, Didier Dormont, Alexis Brice, et al.. Genetic Frontotemporal Dementia with TDP-43 Inclusions:Distinct Radiological Phenotypes between Patients with PGRN and C9ORF72 Mutations. RSNA, Nov 2014, Chicago, United States. ⟨hal-01439623⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, et al.. A Prototype Representation to Approximate White Matter Bundles with Weighted Currents. MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2014, Boston, United States. ⟨hal-01010702⟩
  • Anne Bertrand, Fatima Ameur, Paola Caroppo, Didier Dormont, Alexis Brice, et al.. Incidence and characterization of supratentorial FLAIR hyperintenstities in patients with sporadic and genetic frontotemporal dementia. AAIC 2014 - Alzheimer’s Association International Conference, Jul 2014, Copenhagen, Denmark. ⟨hal-01114135⟩
  • Paola Caroppo, Marie-Odile Habert, Stanley Durrleman, Hugo Bertin, Alexandre Routier, et al.. Multimodal neuroimaging study in presymptomatic GRN mutations carriers. 9th International Conference on Frontotemporal Dementias (ICFTD), Oct 2014, Vancouver, Canada. ⟨hal-01114134⟩
  • Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, et al.. Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes. MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. pp.267-274, ⟨10.1007/978-3-642-40811-3_34⟩. ⟨hal-01188791⟩
  • Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, et al.. Towards joint morphometry of white matter tracts and gray matter surfaces. Human Brain Mapping, 2013, Seattle, United States. ⟨hal-00816138⟩
  • Claire Cury, Joan Glaunès, Emilie Gerardin, Marie Chupin, Olivier Colliot. Modelling morphological variability of the hippocampus using manifold learning and large deformations. OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China. ⟨hal-00816100⟩
  • Thomas Samaille, Olivier Colliot, Didier Dormont, Marie Chupin. Automatic segmentation of age-related white matter changes on flair images: method and multicentre validation. ISBI 2011 - 8th IEEE International Symposium on Biomedical Imaging: from Nano to Macro, Mar 2011, Chicago, United States. pp.2014 - 2017, ⟨10.1109/ISBI.2011.5872807⟩. ⟨hal-00817386⟩
  • Gilad Liberman, Yoram Louzoun, Olivier Colliot, Dafna Bashat. T 1 mapping, AIF and Pharmacokinetic Parameter Extraction from Dynamic Contrast Enhancement MRI Data. MICCAI Workshop on Multimodal Brain Image Analysis MBIA 2011, 2011, Toronto, Canada. pp.76 - 83, ⟨10.1007/978-3-642-24446-9_10⟩. ⟨hal-01439120⟩
  • R. Cuingnet, Joan Alexis Glaunès, M. Chupin, Habib Benali, Olivier Colliot, et al.. Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease. MICCAI Workshop on Machine Learning in Medical Imaging, Sep 2011, Toronto, Canada. pp.201-208, ⟨10.1007/978-3-642-24319-6_25⟩. ⟨hal-00712091⟩
  • Rémi Cuingnet, Charlotte Rosso, Stéphane Lehéricy, Didier Dormont, Habib Benali, et al.. Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome. Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010, 2010, Beijing, China. pp.316 - 323, ⟨10.1007/978-3-642-15705-9_39⟩. ⟨hal-01439126⟩
  • Thomas Samaille, Olivier Colliot, Didier Dormont, Marie Chupin. Automated segmentation of white matter lesions using FLAIR images.. OHBM 2010 - 16th International Conference on Functional Mapping of the Human Brain, Jun 2010, Barcelona, Spain. ⟨hal-00817395⟩
  • Rémi Cuingnet, Marie Chupin, Habib Benali, Olivier Colliot. Spatial and anatomical regularization of SVM for brain image analysis. Neural Information Processing Systems NIPS 2010, 2010, Vancouver, Canada. ⟨hal-01439123⟩
  • Guillaume Auzias, Joan Alexis Glaunès, Arnaud Cachia, Pascal Cathier, Eric Bardinet, et al.. Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints. 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, France. pp.1127-1130. ⟨hal-00534433⟩