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Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


Service de Neuroradiologie [CHU Pitié-Salpêtrière]   

Journal articles27 documents

  • Alexandre Morin, Jorge Samper-González, Anne Bertrand, Sebastian Stroer, Didier Dormont, et al.. Accuracy of MRI Classification Algorithms in a Tertiary Memory Center Clinical Routine Cohort. Journal of Alzheimer's Disease, IOS Press, 2020, pp.1-10. ⟨10.3233/JAD-190594⟩. ⟨hal-02511532⟩
  • Pierre Chagué, Béatrice Marro, Sarah Fadili, Marion Houot, Alexandre Morin, et al.. Radiological classification of dementia from anatomical MRI assisted by machine learning-derived maps. Journal de Neuroradiologie / Journal of Neuroradiology, Elsevier Masson, 2020, ⟨10.1016/j.neurad.2020.04.004⟩. ⟨hal-02641005⟩
  • Michel Thiebaut de Schotten, Hovagim Bakardjian, Habib Benali, Hugo Bertin, Joel Bonheur, et al.. Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer's disease. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, Elsevier, 2019, 15 (7), pp.940-950. ⟨10.1016/j.jalz.2019.03.006⟩. ⟨hal-02368904⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Martina Sundqvist, et al.. Structural, Microstructural, and Metabolic Alterations in Primary Progressive Aphasia Variants. Frontiers in Neurology, Frontiers, 2018, 9, ⟨10.3389/fneur.2018.00766⟩. ⟨hal-01897015⟩
  • Arnaud Marcoux, Ninon Burgos, Anne Bertrand, Marc Teichmann, Alexandre Routier, et al.. An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. Frontiers in Neuroinformatics, Frontiers, 2018, 12, ⟨10.3389/fninf.2018.00094⟩. ⟨hal-01950933⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Sabrina Fontanella, Pascal Lu, et al.. Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data. NeuroImage, Elsevier, 2018, 183, pp.504-521. ⟨10.1016/j.neuroimage.2018.08.042⟩. ⟨hal-01858384⟩
  • Claire Cury, Joan Glaunès, Marie Chupin, Olivier Colliot. Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Taylor & Francis, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩. ⟨hal-01135304⟩
  • Romain Colle, Tomoyuki Segawa, Marie Chupin, Minh Ngoc Thien Kim Tran Dong, Patrick Hardy, et al.. Early life adversity is associated with a smaller hippocampus in male but not female depressed in-patients: a case–control study. BMC Psychiatry, BioMed Central, 2017, 17 (1), pp.71. ⟨10.1186/s12888-017-1233-2⟩. ⟨hal-01474139⟩
  • Romain Colle, Claire Cury, Marie Chupin, Eric Deflesselle, Patrick Hardy, et al.. Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion. Neuroimage-Clinical, Elsevier, 2016, ⟨10.1016/j.nicl.2016.04.009⟩. ⟨hal-01310464⟩
  • Grégory Operto, Marie Chupin, Bénédicte Batrancourt, Marie-Odile Habert, Olivier Colliot, et al.. CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. Neuroinformatics, Springer, 2016, pp.1-12. ⟨10.1007/s12021-016-9295-8⟩. ⟨hal-01303094⟩
  • Lorraine Hamelin, Julien Lagarde, Guillaume Dorothée, Claire Leroy, Mickael Labit, et al.. Early and protective microglial activation in Alzheimer's disease: a prospective study using 18F-DPA-714 PET imaging. Brain - A Journal of Neurology , Oxford University Press (OUP), 2016, 139 (Pt 4), pp.1252-64. ⟨10.1093/brain/aww017⟩. ⟨hal-01372414⟩
  • Fatima Ameur, Olivier Colliot, Paola Caroppo, Sebastian Stroer, Didier Dormont, et al.. White matter lesions in FTLD: distinct phenotypes characterize GRN and C9ORF72 mutations. Neurology Genetics, American Academy of Neurology, 2016, 2 (1), ⟨10.1212/NXG.0000000000000047⟩. ⟨hal-01266596⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Thomas R Henry, et al.. Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices. Magnetic Resonance Materials in Physics, Biology and Medicine, Springer Verlag, 2016. ⟨hal-01321870v2⟩
  • Enrica Cavedo, Bruno Dubois, Olivier Colliot, Simone Lista, Bernard Croisile, et al.. Reduced Regional Cortical Thickness Rate of Change in Donepezil-Treated Subjects With Suspected Prodromal Alzheimer’s Disease. Journal of Clinical Psychiatry, Physicians Postgraduate Press, 2016, ⟨10.4088/JCP.15m10413⟩. ⟨hal-01388951⟩
  • Romain Colle, Irène Dupong, Olivier Colliot, Eric Deflesselle, Patrick Hardy, et al.. Smaller hippocampal volumes predict lower antidepressant response/remission rates in depressed patients: A meta-analysis. World Journal of Biological Psychiatry, Taylor & Francis, 2016, pp.1-23. ⟨10.1080/15622975.2016.1208840⟩. ⟨hal-01372398⟩
  • Stefan J Teipel, Enrica Cavedo, Michel J Grothe, Simone Lista, Samantha Galluzzi, et al.. Predictors of cognitive decline and treatment response in a clinical trial on suspected prodromal Alzheimer's disease. Neuropharmacology, Elsevier, 2016, 108, pp.128-35. ⟨hal-01372417⟩
  • Claire Cury, Roberto Toro, Fanny Cohen, Clara Fischer, Amel Mhaya, et al.. Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects. Frontiers in Neuroanatomy, Frontiers, 2015, 9, pp.160. ⟨10.3389/fnana.2015.00160⟩. ⟨hal-01251239⟩
  • Bruno Dubois, Marie Chupin, Harald Hampel, Simone Lista, Enrica Cavedo, et al.. Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease. Alzheimer's and Dementia, Elsevier, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩. ⟨hal-01249861⟩
  • Claire Boutet, Marie Chupin, Stéphane Lehéricy, Linda Marrakchi-Kacem, Stéphane Epelbaum, et al.. Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study. Neuroimage-Clinical, Elsevier, 2014, 5, pp.341-8. ⟨hal-01099185⟩
  • Paola Caroppo, Isabelle Le Ber, Agnès Camuzat, Fabienne Clot, Lionel Naccache, et al.. Extensive white matter involvement in patients with frontotemporal lobar degeneration: think progranulin. JAMA neurology, American Medical Association (imprimé) / 2014, 71 (12), pp.1562-6. ⟨hal-01439037⟩
  • Thomas Samaille, Ludovic Fillon, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, et al.. Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation. PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩. ⟨hal-00789657⟩
  • Claire Boutet, Marie Chupin, Olivier Colliot, Marie Sarazin, Gurkan Mutlu, et al.. Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?. Neuroradiology, Springer Verlag, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩. ⟨hal-00790081⟩
  • Charlotte Rosso, Olivier Colliot, Christian Pires, Christine Delmaire, Romain Valabrègue, et al.. Early ADC changes in motor structures predict outcome of acute stroke better than lesion volume. Journal de Neuroradiologie / Journal of Neuroradiology, Elsevier Masson, 2011, 38 (2), pp.105-12. ⟨10.1016/j.neurad.2010.05.001⟩. ⟨hal-00805381⟩
  • Rémi Cuingnet, Charlotte Rosso, Marie Chupin, Stéphane Lehéricy, Didier Dormont, et al.. Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome. Medical Image Analysis, Elsevier, 2011, 15 (5), pp.729-37. ⟨10.1016/j.media.2011.05.007⟩. ⟨hal-00795741⟩
  • Marie Chupin, Emilie Gérardin, Rémi Cuingnet, Eric Bardinet, Didier Dormont, et al.. Segmentation ciblée d’images IRM et maladie d’Alzheimer. Innovation and Research in BioMedical engineering, Elsevier Masson, 2011. ⟨hal-01413898⟩
  • Charlotte Rosso, Olivier Colliot, Romain Valabrègue, Sophie Crozier, Didier Dormont, et al.. Tissue at risk in the deep middle cerebral artery territory is critical to stroke outcome.. Neuroradiology, Springer Verlag, 2011, 53 (10), pp.763-71. ⟨10.1007/s00234-011-0916-5⟩. ⟨hal-00795756⟩
  • Olivier Colliot, Gaël Chételat, Marie Chupin, Béatrice Desgranges, Benoît Magnin, et al.. Discrimination between Alzheimer disease, mild cognitive impairment, and normal aging by using automated segmentation of the hippocampus.. Radiology, Radiological Society of North America, 2008, 248 (1), pp.194-201. ⟨10.1148/radiol.2481070876⟩. ⟨inserm-00383265⟩

Conference papers13 documents

  • Elina Thibeau-Sutre, Olivier Colliot, Didier Dormont, Ninon Burgos. Visualization approach to assess the robustness of neural networks for medical image classification. SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨hal-02370532v3⟩
  • Jorge Samper-Gonzalez, Simona Bottani, Ninon Burgos, Sabrina Fontanella, Pascal Lu, et al.. Reproducible evaluation of Alzheimer's Disease classification from MRI and PET data. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore. ⟨hal-01761666⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Pierre-Maxime David, et al.. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore. ⟨hal-01764289⟩
  • Arnaud Marcoux, Ninon Burgos, Anne Bertrand, Alexandre Routier, Junhao Wen, et al.. A pipeline for the analysis of 18F-FDG PET data on the cortical surface and its evaluation on ADNI. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore. ⟨hal-01757646⟩
  • Junhao Wen, Hui Zhang, Daniel Alexander, Stanley Durrleman, Alexandre Routier, et al.. NODDI Highlights Promising New Markers In Presymptomatic C9orf72 Carriers. OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore. ⟨hal-01758137⟩
  • Junhao Wen, Jorge Samper-Gonzalez, Simona Bottani, Alexandre Routier, Ninon Burgos, et al.. Using diffusion MRI for classification and prediction of Alzheimer's Disease: a reproducible study. AAIC 2018 - Alzheimer's Association International Conference, Jul 2018, Chicago, United States. ⟨hal-01758167⟩
  • Junhao Wen, Jorge Samper-Gonzalez, Simona Bottani, Alexandre Routier, Ninon Burgos, et al.. Comparison of DTI Features for the Classification of Alzheimer's Disease: A Reproducible Study. OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore. ⟨hal-01758206v2⟩
  • Manon Ansart, Stéphane Epelbaum, Geoffroy Gagliardi, Olivier Colliot, Didier Dormont, et al.. Prediction of amyloidosis from neuropsychological and MRI data for cost effective inclusion of pre-symptomatic subjects in clinical trials. Multimodal Learning for Clinical Decision Support, Sep 2017, Quebec City, Canada. ⟨hal-01578422⟩
  • Sébastian Ströer, Ludovic Fillon, Stéphane Epelbaum, Marc Teichmann, Agnès Michon, et al.. Étude quantitative des anomalies de signal flair de la substance blanche dans les pathologies neurodégénératives. SFNR 2017 - 44ème Congrès de la Société Française de Neuroradiologie, Mar 2017, Paris, France. pp.1, ⟨10.1016/j.neurad.2017.01.011⟩. ⟨hal-01562645⟩
  • Anne Bertrand, Stephane Epelbaum, Marie-Odile Habert, Harald Hampel, Hovagim Bakardjian, et al.. The INSIGHT cohort: baseline analysis of structural MR imaging in asymptomatic subjects at risk for Alzheimer's disease. AAIC, Jul 2016, Toronto, Canada. ⟨10.1016/j.jalz.2016.06.612⟩. ⟨hal-01439571⟩
  • Anne Bertrand, Fatima Ameur, Paola Caroppo, Didier Dormont, Alexis Brice, et al.. Incidence and characterization of supratentorial FLAIR hyperintenstities in patients with sporadic and genetic frontotemporal dementia. AAIC 2014 - Alzheimer’s Association International Conference, Jul 2014, Copenhagen, Denmark. ⟨hal-01114135⟩
  • Anne Bertrand, Fatima Ameur, Paola Caroppo, Didier Dormont, Alexis Brice, et al.. Genetic Frontotemporal Dementia with TDP-43 Inclusions:Distinct Radiological Phenotypes between Patients with PGRN and C9ORF72 Mutations. RSNA, Nov 2014, Chicago, United States. ⟨hal-01439623⟩
  • Rémi Cuingnet, Charlotte Rosso, Stéphane Lehéricy, Didier Dormont, Habib Benali, et al.. Spatially Regularized SVM for the Detection of Brain Areas Associated with Stroke Outcome. Medical Image Computing and Computer-Assisted Intervention, MICCAI 2010, 2010, Beijing, China. pp.316 - 323, ⟨10.1007/978-3-642-15705-9_39⟩. ⟨hal-01439126⟩

Preprints, Working Papers, ...1 document

  • Alexandre Routier, Ninon Burgos, Jérémy Guillon, Jorge Samper-González, Junhao Wen, et al.. Clinica: an open source software platform for reproducible clinical neuroscience studies. 2019. ⟨hal-02308126⟩