Co-authors

Researcher identifiers

Export Publications

Export the displayed publications:
Number of documents

61

Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


Sorbonne Université   

Journal articles23 documents

  • Didier Dormont, Noam Ben-Eliezer, Ninon Burgos, Olivier Colliot, Fabrizio de Vico Fallani, et al.. Tribute to Anne Bertrand (1978–2018): Neuroradiologist, scientist, teacher and friend. Journal de Neuroradiologie / Journal of Neuroradiology, Elsevier Masson, 2019, 46 (2), pp.155-159. ⟨10.1016/j.neurad.2019.01.001⟩. ⟨hal-02265305⟩
  • Jérémy Guillon, Mario Chavez, Federico Battiston, Yohan Attal, Valentina Corte, et al.. Disrupted core-periphery structure of multimodal brain networks in Alzheimer’s disease. Network Neuroscience, MIT Press, 2019, 3 (2), pp.635-652. ⟨10.1162/netn_a_00087⟩. ⟨hal-02265308⟩
  • Olivier Colliot. Interpretable and reliable artificial intelligence systems for brain diseases. ERCIM News, ERCIM, 2019, 118. ⟨hal-02178901⟩
  • Maxime Bertoux, Julien Lagarde, Fabian Corlier, Lorraine Hamelin, Jean-François Mangin, et al.. Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition. Neurobiology of Aging, Elsevier, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩. ⟨inserm-02266990⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Olivier Colliot, et al.. Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis. Journal of Medical Imaging, SPIE Digital Library, 2019, 6 (01), ⟨10.1117/1.JMI.6.1.014005⟩. ⟨hal-02042526v2⟩
  • Clémence Fournier, Mathieu Barbier, Agnès Camuzat, Vincent Anquetil, Serena Lattante, et al.. Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers. Neurobiology of Aging, Elsevier, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩. ⟨hal-02025976⟩
  • Manon Ansart, Stéphane Epelbaum, Geoffroy Gagliardi, Olivier Colliot, Didier Dormont, et al.. Reduction of recruitment costs in preclinical AD trials. Validation of automatic pre-screening algorithm for brain amyloidosis. Statistical Methods in Medical Research, SAGE Publications, 2019, pp.096228021882303. ⟨10.1177/0962280218823036⟩. ⟨hal-01964942v2⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, et al.. Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis. Medical Image Analysis, Elsevier, In press, ⟨10.1016/j.media.2019.101546⟩. ⟨hal-02276634⟩
  • Giorgia Querin, Peter Bede, Mohamed Mounir El Mendili, Menghan Li, Mélanie Pélégrini-Issac, et al.. Presymptomatic spinal cord pathology in c9orf72 mutation carriers: a longitudinal neuroimaging study. Annals of Neurology, Wiley, 2019, 86 (2), pp.158-167. ⟨10.1002/ana.25520⟩. ⟨hal-02265301⟩
  • Junhao Wen, Hui Zhang, Daniel Alexander, Stanley Durrleman, Alexandre Routier, et al.. Neurite density is reduced in the presymptomatic phase of C9orf72 disease. Journal of Neurology, Neurosurgery and Psychiatry, BMJ Publishing Group, 2019, J Neurol Neurosurg Psychiatry, 90 (4), pp.387-94. ⟨10.1136/jnnp-2018-318994⟩. ⟨hal-01907482⟩
  • Anne Bertrand, Junhao Wen, Daisy Rinaldi, Marion Houot, Sabrina Sayah, et al.. Early cognitive, structural and microstructural changes in c9orf72 presymptomatic carriers before 40 years of age. JAMA neurology, American Medical Association (imprimé) / 2018, 75 (2), pp.236-245. ⟨10.1001/jamaneurol.2017.4266⟩. ⟨hal-01654000⟩
  • Bruno Dubois, Stéphane Epelbaum, Francis Nyasse, Hovagim Bakardjian, Geoffroy Gagliardi, et al.. Cognitive and neuroimaging features and brain β-amyloidosis in individuals at risk of Alzheimer's disease (INSIGHT-preAD): a longitudinal observational study. Lancet Neurology, Elsevier, 2018, 17 (4), pp.335 - 346. ⟨10.1016/S1474-4422(18)30029-2⟩. ⟨hal-01777834⟩
  • Claire Cury, Joan Glaunès, Roberto Toro, Marie Chupin, Gunter Schumann, et al.. Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids. Frontiers in Neuroscience, Frontiers, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩. ⟨hal-01920263⟩
  • Kuldeep Kumar, Laurent Chauvin, Matthew Toews, Olivier Colliot, Christian Desrosiers. Multi-modal brain fingerprinting: a manifold approximation based framework. NeuroImage, Elsevier, 2018, 183, pp.212 - 226. ⟨10.1016/j.neuroimage.2018.08.006⟩. ⟨hal-01910367⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Sabrina Fontanella, Pascal Lu, et al.. Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data. NeuroImage, Elsevier, 2018, 183, pp.504-521. ⟨10.1016/j.neuroimage.2018.08.042⟩. ⟨hal-01858384⟩
  • Clara Sanches, Alexandre Routier, Olivier Colliot, Marc Teichmann. The structure of the mental lexicon: what primary progressive aphasias reveal. Neuropsychologia, Elsevier, 2018, 109, pp.107-115. ⟨10.1016/j.neuropsychologia.2017.12.018⟩. ⟨hal-01672932⟩
  • Pietro Gori, Olivier Colliot, Linda Kacem, Yulia Worbe, Alexandre Routier, et al.. Double diffeomorphism: combining morphometry and structural connectivity analysis. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2018, 37 (9), pp.2033-2043. ⟨10.1109/TMI.2018.2813062⟩. ⟨hal-01709847v2⟩
  • Arnaud Marcoux, Ninon Burgos, Anne Bertrand, Marc Teichmann, Alexandre Routier, et al.. An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. Frontiers in Neuroinformatics, Frontiers, 2018, 12, ⟨10.3389/fninf.2018.00094⟩. ⟨hal-01950933⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Martina Sundqvist, et al.. Some new proposals for the classification of inherited myopathies. Journal of the Neurological Sciences, Elsevier, 2018, 391, pp.118-119. ⟨hal-02026014⟩
  • Harald Hampel, Nicola Toschi, Claudio Babiloni, Filippo Baldacci, Keith Black, et al.. Revolution of Alzheimer Precision Neurology. Passageway of Systems Biology and Neurophysiology. Journal of Alzheimer's Disease, IOS Press, 2018, 64 (s1), pp.S47 - S105. ⟨10.3233/jad-179932⟩. ⟨hal-01910402⟩
  • Igor Koval, Jean-Baptiste Schiratti, Alexandre Routier, Michael Bacci, Olivier Colliot, et al.. Spatiotemporal Propagation of the Cortical Atrophy: Population and Individual Patterns. Frontiers in Neurology, Frontiers, 2018, 9, pp.235. ⟨10.3389/fneur.2018.00235⟩. ⟨hal-01910400⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Martina Sundqvist, et al.. Structural, Microstructural, and Metabolic Alterations in Primary Progressive Aphasia Variants. Frontiers in Neurology, Frontiers, 2018, 9, ⟨10.3389/fneur.2018.00766⟩. ⟨hal-01897015⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Cyril Poupon, et al.. A Bayesian Framework for Joint Morphometry of Surface and Curve meshes in Multi-Object Complexes. Medical Image Analysis, Elsevier, 2017, 35, pp.458-474. ⟨10.1016/j.media.2016.08.011⟩. ⟨hal-01359423⟩

Conference papers30 documents

  • Alexandre Bône, Maxime Louis, Olivier Colliot, Stanley Durrleman. Learning low-dimensional representations of shape data sets with diffeomorphic autoencoders. IPMI 2019 : Information Processing in Medical Imaging, Jun 2019, Hong-Kong, China. ⟨hal-01963736v2⟩
  • Alexandre Bône, Benoît Martin, Maxime Louis, Olivier Colliot, Stanley Durrleman. Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set. OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨hal-02090275⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Marie-Odile Habert, Theodoros Evgeniou, et al.. Predicting progression to Alzheimer’s disease from clinical and imaging data: a reproducible study. OHBM 2019 - Organization for Human Brain Mapping Annual Meeting 2019, Jun 2019, Rome, Italy. ⟨hal-02142315⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Marie-Odile Habert, Theodoros Evgeniou, et al.. Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data. SPIE Medical Imaging 2019, Feb 2019, San Diego, United States. ⟨hal-02025880v2⟩
  • Igor Koval, Arnaud Marcoux, Ninon Burgos, Stéphanie Allassonnière, Olivier Colliot, et al.. Deciphering the progression of PET alterations using surface-based spatiotemporal modeling. OHBM 2019 - Annual meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02134909⟩
  • Manon Ansart, Ninon Burgos, Olivier Colliot, Didier Dormont, Stanley Durrleman. Prediction of future cognitive scores and dementia onset in Mild Cognitive Impairment patients. OHBM 2019 - Organization for Human Brain Mapping Conference, Jun 2019, Rome, Italy. ⟨hal-02098427v2⟩
  • Alexandre Routier, Arnaud Marcoux, Mauricio Diaz Melo, Jérémy Guillon, Jorge Samper-Gonzlez, et al.. New advances in the Clinica software platform for clinical neuroimaging studies. OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨hal-02132147⟩
  • Junhao Wen​, Elina Thibeau--Sutre​, Jorge Samper-González​, Alexandre Routier, Simona Bottani​, et al.. How serious is data leakage in deep learning studies on Alzheimer's disease classification?. 2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02105133v2⟩
  • Junhao Wen​, Jorge Samper-González​, Alexandre Routier, Simona Bottani​, Stanley Durrleman​, et al.. Beware of feature selection bias! Example on Alzheimer's disease classification from diffusion MRI. 2019 OHBM Annual Meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02105134⟩
  • Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic, Fabrizio de Vico Fallani. Target controllability in genetic networks of macrophage activation. Netsci 2019, May 2019, Burlington, United States. ⟨hal-02314001⟩
  • Alexandre Bône, Olivier Colliot, Stanley Durrleman. Learning distributions of shape trajectories from longitudinal datasets: a hierarchical model on a manifold of diffeomorphisms. CVPR 2018 - Computer Vision and Pattern Recognition 2018, Jun 2018, Salt Lake City, United States. ⟨hal-01744538v3⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Olivier Colliot, et al.. FLAIR MR Image Synthesis By Using 3D Fully Convolutional Networks for Multiple Sclerosis. ISMRM-ESMRMB 2018 - Joint Annual Meeting, Jun 2018, Paris, France. pp.1-6. ⟨hal-01723070⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, et al.. Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training. MICCAI 2018 – 21st International Conference On Medical Image Computing & Computer Assisted Intervention, Sep 2018, Granada, Spain. ⟨10.1007/978-3-030-00931-1_59⟩. ⟨hal-01810822⟩
  • Giulia Bassignana, Jennifer Fransson, O. Colliot, Violetta Zujovic, Fabrizio de Vico Fallani. Identification of Driver Nodes in Genetic Networks Regulating Macrophage Activation. Conference on Complex Systems - CSS, Sep 2018, Thessaloniki, Greece. ⟨hal-01967797⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Marie-Odile Habert, Theodoros Evgeniou, et al.. Three simple ideas for predicting progression to Alzheimer's disease. 8th International Workshop on Pattern Recognition in Neuroimaging, Jun 2018, Singapour, Singapore. ⟨hal-01891996⟩
  • Junhao Wen, Jorge Samper-Gonzalez, Simona Bottani, Alexandre Routier, Ninon Burgos, et al.. Comparison of DTI Features for the Classification of Alzheimer's Disease: A Reproducible Study. OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore. ⟨hal-01758206v2⟩
  • Junhao Wen, Hui Zhang, Daniel Alexander, Stanley Durrleman, Alexandre Routier, et al.. NODDI Highlights Promising New Markers In Presymptomatic C9orf72 Carriers. OHBM 2018 - Organization for Human Brain Mapping Annual Meeting, Jun 2018, Singapour, Singapore. ⟨hal-01758137⟩
  • Junhao Wen, Jorge Samper-Gonzalez, Simona Bottani, Alexandre Routier, Ninon Burgos, et al.. Using diffusion MRI for classification and prediction of Alzheimer's Disease: a reproducible study. AAIC 2018 - Alzheimer's Association International Conference, Jul 2018, Chicago, United States. ⟨hal-01758167⟩
  • Arnaud Marcoux, Ninon Burgos, Anne Bertrand, Alexandre Routier, Junhao Wen, et al.. A pipeline for the analysis of 18F-FDG PET data on the cortical surface and its evaluation on ADNI. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore. ⟨hal-01757646⟩
  • Jorge Samper-Gonzalez, Simona Bottani, Ninon Burgos, Sabrina Fontanella, Pascal Lu, et al.. Reproducible evaluation of Alzheimer's Disease classification from MRI and PET data. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapour, Singapore. ⟨hal-01761666⟩
  • Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, et al.. Converting Alzheimer's disease map into a heavyweight ontology: a formal network to integrate data. DILS 2018 - 13th International Conference on Data Integration in the Life Sciences, Nov 2018, Hannover, Germany. pp.1-9. ⟨hal-01917742⟩
  • Vincent J. Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, et al.. Integrating ontological representation and reasoning into a disease map: application to Alzheimer's disease. DMCM 2018 - 3rd Disease Maps Community Meeting, Jun 2018, Paris, France. pp.1-2. ⟨hal-01873474⟩
  • Alexandre Routier, Jérémy Guillon, Ninon Burgos, Jorge Samper-Gonzalez, Junhao Wen, et al.. Clinica: an open source software platform for reproducible clinical neuroscience studies. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore. ⟨hal-01760658⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Pierre-Maxime David, et al.. Structural, microstructural and metabolic alterations in Primary Progressive Aphasia variants. Annual meeting of the Organization for Human Brain Mapping - OHBM 2018, Jun 2018, Singapore, Singapore. ⟨hal-01764289⟩
  • Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic, Fabrizio de Vico Fallani. Identification of driver nodes in genetic networks regulating macrophage activation. International School and Conference on Network Science (Netsci) 2018, Jun 2018, Paris, France. ⟨hal-02315609⟩
  • Manon Ansart, Stéphane Epelbaum, Olivier Colliot, Didier Dormont, Bruno Dubois, et al.. Selection of amyloid positive pre-symptomatic subjects using automatic analysis of neuropsychological and MRI data for cost effective inclusion procedures in clinical trials. Clinical Trials for Alzheimer's Disease, Nov 2017, Boston, United States. pp.295. ⟨hal-02098434v2⟩
  • Alexandre Morin, Jorge Samper-Gonzales, Anne Bertrand, Enrica Cavedo, Simone Lista, et al.. Accuracy of MRI classification algorithms in a tertiary memory center clinical routine cohort. AAIC 2017 - Alzheimer's Association International Conference, Jul 2017, London, United Kingdom. pp.P772-P774, ⟨10.1016/j.jalz.2017.06.1034⟩. ⟨hal-02192444⟩
  • Oscar Camara, O. Colliot, Gaspar Delso, Isabelle Bloch. 3D nonlinear PET-CT image registration algorithm with constrained Free-Form Deformations. 3rd IASTED International Conference on Visualization, Imaging, and Image Processing (VIIP 2003), 2003, Benalmadena, Spain. ⟨hal-01930355⟩
  • Alexander Tuzikov, Olivier Colliot, Isabelle Bloch. Brain symmetry plane computation in MR images using inertia axes and optimization. 16th International Conference on Pattern Recognition, Aug 2002, Québec, Canada. ⟨10.1109/ICPR.2002.1044783⟩. ⟨hal-01930349⟩
  • Olivier Colliot, Isabelle Bloch, Alexander Tuzikov. Characterization of approximate plane symmetries for 3D fuzzy objects. 9th International Conference on Information Processing and Management of Uncertainty IPMU 2002), Jul 2002, Annecy, France. pp.1749-1756. ⟨hal-01930352⟩

Poster communications3 documents

  • Claire Cury, Marzia A Scelzi, Roberto Toro, Vincent Frouin, Eric Artiges, et al.. On the genetic bases of incomplete hippocampal inversion: a genome-wide association study. OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1. ⟨inserm-02074616⟩
  • Vincent Henry, Giulia Bassignana, Violetta Zujovic, Fabrizio de Vico Fallani, Olivier Dameron, et al.. Conciliation of process description and molecular interaction networks using logical properties of ontology. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM), Jul 2019, Nantes, France. ⟨hal-02301702⟩
  • Johann Faouzi, Samir Bekadar, Olivier Colliot, Jean-Christophe Corvol. Predicting Impulse Control Disorders in Parkinson's Disease: A Challenging Task. International Congress of Parkinson's Disease and Movement Disorders, Sep 2019, Nice, France. ⟨hal-02315533⟩

Preprints, Working Papers, ...5 documents

  • Claire Cury, Joan Alexis Glaunès, Roberto Toro, Marie Chupin, Gunter Schumann, et al.. Statistical shape analysis of large datasets based on diffeomorphic iterative centroids. 2019. ⟨hal-01832191⟩
  • Alexandre Routier, Ninon Burgos, Jérémy Guillon, Jorge Samper-González, Junhao Wen, et al.. Clinica: an open source software platform for reproducible clinical neuroscience studies. 2019. ⟨hal-02308126⟩
  • Alexandre Bône, Olivier Colliot, Stanley Durrleman. Auto-encoding meshes of any topology with the current-splatting and exponentiation layers. 2019. ⟨hal-02087586v2⟩
  • Alexandre Bône, Olivier Colliot, Stanley Durrleman. Learning the spatiotemporal variability in longitudinal shape data sets. 2019. ⟨hal-02091549v4⟩
  • Igor Koval, Alexandre Bône, Maxime Louis, Simona Bottani, Arnaud Marcoux, et al.. Simulating Alzheimer's disease progression with personalised digital brain models. 2018. ⟨hal-01964821⟩