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Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


Algorithms, models and methods for images and signals of the human brain   

Journal articles14 documents

  • Bruno Dubois, Marie Chupin, Harald Hampel, Simone Lista, Enrica Cavedo, et al.. Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease. Alzheimer's and Dementia, Elsevier, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩. ⟨hal-01249861⟩
  • Claire Cury, Roberto Toro, Fanny Cohen, Clara Fischer, Amel Mhaya, et al.. Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects. Frontiers in Neuroanatomy, Frontiers, 2015, 9, pp.160. ⟨10.3389/fnana.2015.00160⟩. ⟨hal-01251239⟩
  • Lorraine Hamelin, Maxime Bertoux, Michel Bottlaender, Helene Corne, Julien Lagarde, et al.. Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease. Neurobiology of Aging, Elsevier, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩. ⟨hal-01254276⟩
  • Romain Colle, Marie Chupin, Claire Cury, Christophe Vandendrie, Florence Gressier, et al.. Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts. Journal of Psychiatric Research, Elsevier, 2015, 61, pp.6. ⟨10.1016/j.jpsychires.2014.12.010⟩. ⟨hal-01108928⟩
  • Paola Caroppo, Marie-Odile Habert, Stanley Durrleman, Aurélie Funkiewiez, Vincent Perlbarg, et al.. Lateral Temporal Lobe: An Early Imaging Marker of the Presymptomatic GRN Disease?. Journal of Alzheimer's Disease, IOS Press, 2015, 47 (3), pp.751-9. ⟨10.3233/JAD-150270⟩. ⟨hal-01220380⟩
  • Harald Hampel, Simone Lista, Stefan J Teipel, Francesco Garaci, Robert Nisticò, et al.. Perspective on future role of biological markers in clinical therapy trials of Alzheimer's disease: a long-range point of view beyond 2020. Biochemical Pharmacology, Elsevier, 2014, pp.426-49. ⟨hal-01098832⟩
  • Pierre Besson, Vera Dinkelacker, Romain Valabregue, Lionel Thivard, Xavier Leclerc, et al.. Structural connectivity differences in left and right temporal lobe epilepsy. NeuroImage, Elsevier, 2014, pp.135-44. ⟨hal-01098831⟩
  • Claire Boutet, Marie Chupin, Stéphane Lehéricy, Linda Marrakchi-Kacem, Stéphane Epelbaum, et al.. Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study. Neuroimage-Clinical, Elsevier, 2014, 5, pp.341-8. ⟨hal-01099185⟩
  • Enrica Cavedo, Simone Lista, Zaven S Khachaturian, Paul S Aisen, Philippe Amouyel, et al.. The road ahead to cure Alzheimer’s disease: development of biological markers and neuroimaging methods for prevention trials across all stages and target populations. Journal of Prevention of Alzheimer’s Disease, 2014, 1 (3), pp.181-202. ⟨10.14283/jpad.2014.32⟩. ⟨hal-01098836⟩
  • Julien Lagarde, Romain Valabrègue, Jean-Christophe Corvol, Isabelle Le Ber, Olivier Colliot, et al.. The clinical and anatomical heterogeneity of environmental dependency phenomena. Journal of Neurology, Springer Verlag, 2013, 260 (9), pp.2262-70. ⟨10.1007/s00415-013-6976-1⟩. ⟨hal-00867487⟩
  • Leonardo Cruz de Souza, Marie Chupin, Maxime Bertoux, Stéphane Lehéricy, Bruno Dubois, et al.. Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?. Journal of Alzheimer's Disease, IOS Press, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩. ⟨hal-00815740⟩
  • Claire Boutet, Marie Chupin, Olivier Colliot, Marie Sarazin, Gurkan Mutlu, et al.. Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?. Neuroradiology, Springer Verlag, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩. ⟨hal-00790081⟩
  • Thomas Samaille, Ludovic Fillon, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, et al.. Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation. PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩. ⟨hal-00789657⟩
  • Guillaume Dorothée, Michel Bottlaender, Edmond Moukari, Leonardo C de Souza, Renaud Maroy, et al.. Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease. Archives of Neurology -Chigago-, American Medical Association, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩. ⟨hal-00790083⟩

Conference papers26 documents

  • Manon Ansart, Stéphane Epelbaum, Geoffroy Gagliardi, Olivier Colliot, Didier Dormont, et al.. Prediction of amyloidosis from neuropsychological and MRI data for cost effective inclusion of pre-symptomatic subjects in clinical trials. Multimodal Learning for Clinical Decision Support, Sep 2017, Quebec City, Canada. ⟨hal-01578422⟩
  • Jean-Baptiste Schiratti, Stéphanie Allassonniere, Olivier Colliot, Stanley Durrleman. Learning spatiotemporal trajectories from manifold-valued longitudinal data. Neural Information Processing Systems, Dec 2015, Montréal, Canada. ⟨hal-01163373v3⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, et al.. Joint Morphometry of Fiber Tracts and Gray Matter structures using Double Diffeomorphisms. IPMI - Information Processing in Medical Imaging, Jun 2015, Isle of Skye, United Kingdom. pp.275-287, ⟨10.1007/978-3-319-19992-4_21⟩. ⟨hal-01142628⟩
  • Ludovic Fillon, Olivier Colliot, Dominique Hasboun, Bruno Dubois, Didier Dormont, et al.. Multi-template approaches for segmenting the hippocampus: the case of the SACHA software. Organization for Human Brain Mapping (OHBM), Jun 2015, Honolulu, United States. pp.5. ⟨hal-01188794⟩
  • Marie Chupin, Johanne Germain, Linda Marrakchi-Kacem, Emilie Gerardin, Claire Boutet, et al.. Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188838⟩
  • Jean-Baptiste Schiratti, Stéphanie Allassonnière, Olivier Colliot, Stanley Durrleman. Mixed-effects model for the spatiotemporal analysis of longitudinal manifold-valued data. 5th MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany. ⟨hal-01245905⟩
  • Jean-Baptiste Schiratti, Stéphanie Allassonniere, Alexandre Routier, Olivier Colliot, Stanley Durrleman. A mixed-effects model with time reparametrization for longitudinal univariate manifold-valued data. IPMI - Information Processing in Medical Imaging , Sebastien Ourselin, Daniel C. Alexander, Carl-Fredrik Westin, M. Jorge Cardoso, Jun 2015, Sleat, Isle of Skye, United Kingdom. pp.564-575. ⟨hal-01163213⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Stéphane Epelbaum, et al.. Imaging of hippocampal inner structure at 7T: robust in-vivo acquisition protocol. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188843⟩
  • Emilie Gérardin, Joan Alexis Glaunès, Marie Chupin, Ana B. Graciano Fouquier, Kevin Roussel, et al.. Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188833⟩
  • Claire Cury, Roberto Toro, Fanny Cohen, Amel Mhaya, Dominique Hasboun, et al.. Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects. Human Brain Mapping - 2015, Jun 2015, Honolulu, United States. ⟨hal-01212219⟩
  • Claire Cury, Joan Glaunés, Roberto Toro, Gunter Schumann, Vincent Frouin, et al.. Statistical shape analysis of large datasets using diffeomorphic iterative centroids. Human Brain Mapping - 2015, Jun 2015, Honolulu, United States. ⟨hal-01212226⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Alexandre Routier, et al.. Unified analysis of shape and structural connectivity of neural pathways. Organisation for Human Brain Mapping, 2015, Honolulu, United States. ⟨hal-01187461⟩
  • Pietro Gori, Olivier Colliot, Linda Marrakchi-Kacem, Yulia Worbe, Fabrizio de Vico Fallani, et al.. A Prototype Representation to Approximate White Matter Bundles with Weighted Currents. MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2014, Boston, United States. ⟨hal-01010702⟩
  • Anne Bertrand, Fatima Ameur, Paola Caroppo, Didier Dormont, Alexis Brice, et al.. Incidence and characterization of supratentorial FLAIR hyperintenstities in patients with sporadic and genetic frontotemporal dementia. AAIC 2014 - Alzheimer’s Association International Conference, Jul 2014, Copenhagen, Denmark. ⟨hal-01114135⟩
  • Lorraine Hamelin, Leonardo Cruz de Souza, Fabian Corlier, Hélène Corne, Marie Chupin, et al.. Improved accuracy of the diagnosis of early Alzheimer’s disease using combined measures of hippocampal volume and sulcal morphology. AAN 2014 - Annual Meeting of the American Academy of Neurology, Apr 2014, Philadelphia, United States. ⟨hal-01114138⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Johanne Germain, Julien Sein, Thomas R Henry, et al.. Slab registration as a first step towards hippocampus subparts high resolution imaging at 7T. ISMRM 2014 - Annual Meeting of the International Society for Magnetic Resonance in Medicine, May 2014, Milan, Italy. ⟨hal-01114137⟩
  • Paola Caroppo, Marie-Odile Habert, Stanley Durrleman, Hugo Bertin, Alexandre Routier, et al.. Multimodal neuroimaging study in presymptomatic GRN mutations carriers. 9th International Conference on Frontotemporal Dementias (ICFTD), Oct 2014, Vancouver, Canada. ⟨hal-01114134⟩
  • Claire Cury, Joan Alexis Glaunès, Marie Chupin, Olivier Colliot. Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid. MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44. ⟨hal-01050590⟩
  • Alexandre Routier, Pietro Gori, Ana B. Graciano Fouquier, Sophie Lecomte, Olivier Colliot, et al.. Evaluation of morphometric descriptors of deep brain structures for the automatic classification of patients with Alzheimer’s disease, mild cognitive impairment and elderly controls. MICCAI Workshop, Sep 2014, Cambridge, United States. pp.8. ⟨hal-01099081⟩
  • Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, et al.. Bayesian Atlas Estimation for the Variability Analysis of Shape Complexes. MICCAI 2013 : Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. pp.267-274, ⟨10.1007/978-3-642-40811-3_34⟩. ⟨hal-01188791⟩
  • Pietro Gori, Olivier Colliot, Yulia Worbe, Linda Marrakchi-Kacem, Sophie Lecomte, et al.. Towards joint morphometry of white matter tracts and gray matter surfaces. Human Brain Mapping, 2013, Seattle, United States. ⟨hal-00816138⟩
  • Claire Cury, Joan Alexis Glaunès, Olivier Colliot. Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents. GSI 2013 - First International Conference Geometric Science of Information, Aug 2013, Paris, France. pp.103-111, ⟨10.1007/978-3-642-40020-9_10⟩. ⟨hal-00857440⟩
  • Thomas Samaille, Olivier Colliot, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, et al.. Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability. SPIE 2012 - Symposium on Medical Imaging, Feb 2012, San Diego, United States. pp.1-9, ⟨10.1117/12.910268⟩. ⟨hal-00817381⟩
  • Ludovic Fillon, Thomas Samaille, Eric Jouvent, Hugues Chabriat, Didier Dormont, et al.. Segmentation of white matter hyperintensities: a comparison of automatic methods on multicentre data. OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Beijing, China. ⟨hal-00817392⟩
  • Claire Cury, Joan Glaunès, Emilie Gerardin, Marie Chupin, Olivier Colliot. Modelling morphological variability of the hippocampus using manifold learning and large deformations. OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China. ⟨hal-00816100⟩
  • Olivier Colliot, Oscar Camara-Rey, Isabelle Bloch. Integration of fuzzy structural information in deformable models. Information Processing and Management of Uncertainty IPMU 2004, 2004, Perugia, Italy. ⟨hal-01930357⟩

Poster communications1 document

  • Jean-Baptiste Schiratti, Stéphanie Allassonniere, Olivier Colliot, Stanley Durrleman. Learning spatio-temporal trajectories from manifold-valued longitudinal data. Neural Information Processing Systems, Dec 2015, Montréal, Canada. Advances in Neural Information Processing Systems, ⟨https://nips.cc/Conferences/current⟩. ⟨hal-01245909⟩

Book sections2 documents

  • Olivier Colliot. Biomarqueurs IRM de la maladie d’Alzheimer : apport du traitement des images. Tillement Jean-Paul; Hauw Jean-Jacques; Papadopoulos Vassilios. Vieillissement et démences : un défi médical, scientifique et socio-économique, Lavoisier, pp.25-37, 2014, Rapports de l’Académie Nationale de Médecine. ⟨hal-01098841⟩
  • Claire Cury, Joan Alexis Glaunès, Olivier Colliot. Diffeomorphic Iterative Centroid Methods for Template Estimation on Large Datasets. Frank Nielsen. Geometric Theory of Information, Chapter 10, Springer, pp.273-299, 2014, ⟨10.1007/978-3-319-05317-2_10⟩. ⟨hal-00939326⟩