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Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


2019   

Journal articles11 documents

  • Clémence Fournier, Mathieu Barbier, Agnès Camuzat, Vincent Anquetil, Serena Lattante, et al.. Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers. Neurobiology of Aging, Elsevier, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩. ⟨hal-02025976⟩
  • Maxime Bertoux, Julien Lagarde, Fabian Corlier, Lorraine Hamelin, Jean-François Mangin, et al.. Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition. Neurobiology of Aging, Elsevier, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩. ⟨inserm-02266990⟩
  • Jérémy Guillon, Mario Chavez, Federico Battiston, Yohan Attal, Valentina Corte, et al.. Disrupted core-periphery structure of multimodal brain networks in Alzheimer’s disease. Network Neuroscience, MIT Press, 2019, 3 (2), pp.635-652. ⟨10.1162/netn_a_00087⟩. ⟨hal-02265308⟩
  • Didier Dormont, Noam Ben-Eliezer, Ninon Burgos, Olivier Colliot, Fabrizio de Vico Fallani, et al.. Tribute to Anne Bertrand (1978–2018): Neuroradiologist, scientist, teacher and friend. Journal de Neuroradiologie / Journal of Neuroradiology, Elsevier Masson, 2019, 46 (2), pp.155-159. ⟨10.1016/j.neurad.2019.01.001⟩. ⟨hal-02265305⟩
  • Junhao Wen, Hui Zhang, Daniel Alexander, Stanley Durrleman, Alexandre Routier, et al.. Neurite density is reduced in the presymptomatic phase of C9orf72 disease. Journal of Neurology, Neurosurgery and Psychiatry, BMJ Publishing Group, 2019, J Neurol Neurosurg Psychiatry, 90 (4), pp.387-94. ⟨10.1136/jnnp-2018-318994⟩. ⟨hal-01907482⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Olivier Colliot, et al.. Fluid-attenuated inversion recovery MRI synthesis from multisequence MRI using three-dimensional fully convolutional networks for multiple sclerosis. Journal of Medical Imaging, SPIE Digital Library, 2019, 6 (01), ⟨10.1117/1.JMI.6.1.014005⟩. ⟨hal-02042526v2⟩
  • Manon Ansart, Stéphane Epelbaum, Geoffroy Gagliardi, Olivier Colliot, Didier Dormont, et al.. Reduction of recruitment costs in preclinical AD trials. Validation of automatic pre-screening algorithm for brain amyloidosis. Statistical Methods in Medical Research, SAGE Publications, 2019, pp.096228021882303. ⟨10.1177/0962280218823036⟩. ⟨hal-01964942v2⟩
  • Olivier Colliot. Interpretable and reliable artificial intelligence systems for brain diseases. ERCIM News, ERCIM, 2019, 118. ⟨hal-02178901⟩
  • Wen Wei, Emilie Poirion, Benedetta Bodini, Stanley Durrleman, Nicholas Ayache, et al.. Predicting PET-derived Demyelination from Multimodal MRI using Sketcher-Refiner Adversarial Training for Multiple Sclerosis. Medical Image Analysis, Elsevier, In press, ⟨10.1016/j.media.2019.101546⟩. ⟨hal-02276634⟩
  • Giorgia Querin, Peter Bede, Mohamed Mounir El Mendili, Menghan Li, Mélanie Pélégrini-Issac, et al.. Presymptomatic spinal cord pathology in c9orf72 mutation carriers: a longitudinal neuroimaging study. Annals of Neurology, Wiley, 2019, 86 (2), pp.158-167. ⟨10.1002/ana.25520⟩. ⟨hal-02265301⟩
  • Michel Thiebaut de Schotten, Hovagim Bakardjian, Habib Benali, Hugo Bertin, Joel Bonheur, et al.. Differential default mode network trajectories in asymptomatic individuals at risk for Alzheimer's disease. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, Elsevier, 2019, 15 (7), pp.940-950. ⟨10.1016/j.jalz.2019.03.006⟩. ⟨hal-02368904⟩

Conference papers15 documents

  • Alexandre Routier, Arnaud Marcoux, Mauricio Diaz Melo, Jérémy Guillon, Jorge Samper-González, et al.. New advances in the Clinica software platform for clinical neuroimaging studies. OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩. ⟨hal-02132147v2⟩
  • Alexandre Routier, Marie-Odile Habert, Anne Bertrand, Aurélie Kas, Pierre-Maxime David, et al.. New advances in the Clinica software platform for clinical neuroimaging studies. Annual meeting of the Organization for Human Brain Mapping - OHBM 2019, Jun 2019, Roma, Italy. ⟨hal-01764289⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Marie-Odile Habert, Theodoros Evgeniou, et al.. Predicting progression to Alzheimer’s disease from clinical and imaging data: a reproducible study. OHBM 2019 - Organization for Human Brain Mapping Annual Meeting 2019, Jun 2019, Rome, Italy. ⟨hal-02142315⟩
  • Junhao Wen​, Elina Thibeau--Sutre​, Jorge Samper-González​, Alexandre Routier, Simona Bottani​, et al.. How serious is data leakage in deep learning studies on Alzheimer's disease classification?. 2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02105133v2⟩
  • Jorge Samper-Gonzalez, Ninon Burgos, Simona Bottani, Marie-Odile Habert, Theodoros Evgeniou, et al.. Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data. SPIE Medical Imaging 2019, Feb 2019, San Diego, United States. ⟨hal-02025880v2⟩
  • Vincent Henry, Giulia Bassignana, Violetta Zujovic, Fabrizio de Vico Fallani, Olivier Dameron, et al.. Conciliation of process description and molecular interaction networks using logical properties of ontology. JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. ⟨hal-02301702⟩
  • Alexandre Bône, Olivier Colliot, Stanley Durrleman. Auto-encoding meshes of any topology with the current-splatting and exponentiation layers. Geometry Meets Deep Learning @ ICCV 2019, Oct 2019, Séoul, South Korea. ⟨hal-02087586v2⟩
  • Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic, Fabrizio de Vico Fallani. Target controllability in genetic networks of macrophage activation. Netsci 2019, May 2019, Burlington, United States. ⟨hal-02314001⟩
  • Alexandre Bône, Maxime Louis, Olivier Colliot, Stanley Durrleman. Learning low-dimensional representations of shape data sets with diffeomorphic autoencoders. IPMI 2019 : Information Processing in Medical Imaging, Jun 2019, Hong-Kong, China. ⟨hal-01963736v2⟩
  • Alexandre Bône, Benoît Martin, Maxime Louis, Olivier Colliot, Stanley Durrleman. Hierarchical modeling of Alzheimer's disease progression from a large longitudinal MRI data set. OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨hal-02090275⟩
  • Junhao Wen​, Jorge Samper-González​, Alexandre Routier, Simona Bottani​, Stanley Durrleman​, et al.. Beware of feature selection bias! Example on Alzheimer's disease classification from diffusion MRI. 2019 OHBM Annual Meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02105134⟩
  • Manon Ansart, Ninon Burgos, Olivier Colliot, Didier Dormont, Stanley Durrleman. Prediction of future cognitive scores and dementia onset in Mild Cognitive Impairment patients. OHBM 2019 - Organization for Human Brain Mapping Conference, Jun 2019, Rome, Italy. ⟨hal-02098427v2⟩
  • Igor Koval, Arnaud Marcoux, Ninon Burgos, Stéphanie Allassonnière, Olivier Colliot, et al.. Deciphering the progression of PET alterations using surface-based spatiotemporal modeling. OHBM 2019 - Annual meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. ⟨hal-02134909⟩
  • Johann Faouzi, Samir Bekadar, Olivier Colliot, Jean-Christophe Corvol. Predicting Impulse Control Disorders in Parkinson's Disease: A Challenging Task. International Congress of Parkinson's Disease and Movement Disorders, Sep 2019, Nice, France. ⟨hal-02315533⟩
  • Claire Cury, Marzia A Scelzi, Roberto Toro, Vincent Frouin, Eric Artiges, et al.. On the genetic bases of incomplete hippocampal inversion: a genome-wide association study. OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1. ⟨inserm-02074616⟩

Poster communications1 document

  • Pascal Lu, Olivier Colliot. A log-logistic survival model from multimodal data for prediction of Alzheimer's Disease. SAfJR 2019 - Survival Analysis for Junior Researchers, Apr 2019, Copenhague, Denmark. ⟨hal-02430943⟩

Preprints, Working Papers, ...5 documents

  • Alexandre Bône, Olivier Colliot, Stanley Durrleman. Learning the spatiotemporal variability in longitudinal shape data sets. 2019. ⟨hal-02091549v4⟩
  • Alexandre Routier, Ninon Burgos, Jérémy Guillon, Jorge Samper-González, Junhao Wen, et al.. Clinica: an open source software platform for reproducible clinical neuroscience studies. 2019. ⟨hal-02308126⟩
  • Manon Ansart, Stéphane Epelbaum, Giulia Bassignana, Alexandre Bône, Simona Bottani, et al.. Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic and Quantitative Review. 2019. ⟨hal-02337815⟩
  • Alexis Guyot, Ana Graciano Fouquier, Emilie Gerardin, Marie Chupin, Joan Glaunès, et al.. A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI. 2019. ⟨hal-02359660⟩
  • Claire Cury, Joan Alexis Glaunès, Roberto Toro, Marie Chupin, Gunter Schumann, et al.. Statistical shape analysis of large datasets based on diffeomorphic iterative centroids. 2019. ⟨hal-01832191⟩