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Olivier Colliot - Research Director at CNRS - ARAMIS Lab (CNRS/INRIA/Inserm/UPMC)


Research Director at CNRS

 

Head of the ARAMIS Lab, a joint team between CNRSInriaInserm and University Pierre and Marie Curie at the Brain and Spine Institute (ICM), in co-direction with Didier Dormont.

 


"Marie Chupin"   

Journal articles35 documents

  • Clémence Fournier, Mathieu Barbier, Agnès Camuzat, Vincent Anquetil, Serena Lattante, et al.. Relations between C9orf72 expansion size in blood, age at onset, age at collection and transmission across generations in patients and presymptomatic carriers. Neurobiology of Aging, Elsevier, 2019, 74, pp.234.e1-234.e8. ⟨10.1016/j.neurobiolaging.2018.09.010⟩. ⟨hal-02025976⟩
  • Maxime Bertoux, Julien Lagarde, Fabian Corlier, Lorraine Hamelin, Jean-François Mangin, et al.. Sulcal morphology in Alzheimer's disease: an effective marker of diagnosis and cognition. Neurobiology of Aging, Elsevier, 2019, Epub ahead of print. ⟨10.1016/j.neurobiolaging.2019.07.015⟩. ⟨inserm-02266990⟩
  • Aline Mendes, Anne Bertrand, Foudil Lamari, Olivier Colliot, Alexandre Routier, et al.. Cerebral microbleeds and CSF Alzheimer biomarkers in primary progressive aphasias. Neurology, American Academy of Neurology, 2018, 90 (12), pp.e1057 - e1065. ⟨10.1212/WNL.0000000000005165⟩. ⟨hal-01820415⟩
  • Claire Cury, Joan Glaunès, Roberto Toro, Marie Chupin, Gunter Schumann, et al.. Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids. Frontiers in Neuroscience, Frontiers, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩. ⟨hal-01920263⟩
  • Claire Cury, Joan Glaunès, Marie Chupin, Olivier Colliot. Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, Taylor & Francis, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩. ⟨hal-01135304⟩
  • Romain Colle, Tomoyuki Segawa, Marie Chupin, Minh Ngoc Thien Kim Tran Dong, Patrick Hardy, et al.. Early life adversity is associated with a smaller hippocampus in male but not female depressed in-patients: a case–control study. BMC Psychiatry, BioMed Central, 2017, 17 (1), pp.71. ⟨10.1186/s12888-017-1233-2⟩. ⟨hal-01474139⟩
  • Enrica Cavedo, Michel J Grothe, Olivier Colliot, Simone Lista, Marie Chupin, et al.. Reduced basal forebrain atrophy progression in a randomized Donepezil trial in prodromal Alzheimer's disease. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.11706. ⟨10.1038/s41598-017-09780-3⟩. ⟨hal-01589622⟩
  • Grégory Operto, Marie Chupin, Bénédicte Batrancourt, Marie-Odile Habert, Olivier Colliot, et al.. CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. Neuroinformatics, Springer, 2016, pp.1-12. ⟨10.1007/s12021-016-9295-8⟩. ⟨hal-01303094⟩
  • Stefan J Teipel, Enrica Cavedo, Michel J Grothe, Simone Lista, Samantha Galluzzi, et al.. Predictors of cognitive decline and treatment response in a clinical trial on suspected prodromal Alzheimer's disease. Neuropharmacology, Elsevier, 2016, 108, pp.128-35. ⟨hal-01372417⟩
  • Enrica Cavedo, Bruno Dubois, Olivier Colliot, Simone Lista, Bernard Croisile, et al.. Reduced Regional Cortical Thickness Rate of Change in Donepezil-Treated Subjects With Suspected Prodromal Alzheimer’s Disease. Journal of Clinical Psychiatry, Physicians Postgraduate Press, 2016, ⟨10.4088/JCP.15m10413 ⟩. ⟨hal-01388951⟩
  • Romain Colle, Irène Dupong, Olivier Colliot, Eric Deflesselle, Patrick Hardy, et al.. Smaller hippocampal volumes predict lower antidepressant response/remission rates in depressed patients: A meta-analysis. World Journal of Biological Psychiatry, Taylor & Francis, 2016, pp.1-23. ⟨10.1080/15622975.2016.1208840⟩. ⟨hal-01372398⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Thomas R Henry, et al.. Robust imaging of hippocampal inner structure at 7T: in vivo acquisition protocol and methodological choices. Magnetic Resonance Materials in Physics, Biology and Medicine, Springer Verlag, 2016. ⟨hal-01321870v2⟩
  • Romain Colle, Claire Cury, Marie Chupin, Eric Deflesselle, Patrick Hardy, et al.. Hippocampal volume predicts antidepressant efficacy in depressed patients without incomplete hippocampal inversion. Neuroimage-Clinical, Elsevier, 2016, ⟨10.1016/j.nicl.2016.04.009⟩. ⟨hal-01310464⟩
  • Lorraine Hamelin, Maxime Bertoux, Michel Bottlaender, Helene Corne, Julien Lagarde, et al.. Sulcal morphology as a new imaging marker for the diagnosis of early onset Alzheimer's disease. Neurobiology of Aging, Elsevier, 2015, 36 (11), pp.2932-9. ⟨10.1016/j.neurobiolaging.2015.04.019⟩. ⟨hal-01254276⟩
  • Bruno Dubois, Marie Chupin, Harald Hampel, Simone Lista, Enrica Cavedo, et al.. Donepezil decreases annual rate of hippocampal atrophy in suspected prodromal Alzheimer's disease. Alzheimer's and Dementia, Elsevier, 2015, 11 (9), pp.1041-1049. ⟨10.1016/j.jalz.2014.10.003⟩. ⟨hal-01249861⟩
  • Romain Colle, Marie Chupin, Claire Cury, Christophe Vandendrie, Florence Gressier, et al.. Depressed suicide attempters have smaller hippocampus than depressed patients without suicide attempts. Journal of Psychiatric Research, Elsevier, 2015, 61, pp.6. ⟨10.1016/j.jpsychires.2014.12.010⟩. ⟨hal-01108928⟩
  • Claire Boutet, Marie Chupin, Stéphane Lehéricy, Linda Marrakchi-Kacem, Stéphane Epelbaum, et al.. Detection of volume loss in hippocampal layers in Alzheimer's disease using 7 T MRI: a feasibility study. Neuroimage-Clinical, Elsevier, 2014, 5, pp.341-8. ⟨hal-01099185⟩
  • Rémi Cuingnet, Joan Alexis Glaunès, Marie Chupin, Habib Benali, Olivier Colliot. Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data. IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩. ⟨hal-00790079⟩
  • Leonardo Cruz de Souza, Marie Chupin, Maxime Bertoux, Stéphane Lehéricy, Bruno Dubois, et al.. Is Hippocampal Volume a Good Marker to Differentiate Alzheimer's Disease from Frontotemporal Dementia?. Journal of Alzheimer's Disease, IOS Press, 2013, 36 (1), pp.57-66. ⟨10.3233/JAD-122293⟩. ⟨hal-00815740⟩
  • Thomas Samaille, Ludovic Fillon, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, et al.. Contrast-based fully automatic segmentation of white matter hyperintensities: method and validation. PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e48953. ⟨10.1371/journal.pone.0048953⟩. ⟨hal-00789657⟩
  • Claire Boutet, Marie Chupin, Olivier Colliot, Marie Sarazin, Gurkan Mutlu, et al.. Is radiological evaluation as good as computer-based volumetry to assess hippocampal atrophy in Alzheimer's disease?. Neuroradiology, Springer Verlag, 2012, 54 (12), pp.1321-1330. ⟨10.1007/s00234-012-1058-0⟩. ⟨hal-00790081⟩
  • Leonardo C de Souza, Marie Chupin, Foudil Lamari, Claude Jardel, Delphine Leclercq, et al.. CSF tau markers are correlated with hippocampal volume in Alzheimer's disease. Neurobiology of Aging, Elsevier, 2012, 33 (7), pp.1253-7. ⟨10.1016/j.neurobiolaging.2011.02.022⟩. ⟨hal-00795742⟩
  • Hosung Kim, Marie Chupin, Olivier Colliot, Boris C Bernhardt, Neda Bernasconi, et al.. Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities. NeuroImage, Elsevier, 2012, 59 (4), pp.3178-3186. ⟨10.1016/j.neuroimage.2011.11.040⟩. ⟨hal-00790810⟩
  • Guillaume Dorothée, Michel Bottlaender, Edmond Moukari, Leonardo C de Souza, Renaud Maroy, et al.. Distinct patterns of antiamyloid-β antibodies in typical and atypical Alzheimer disease. Archives of Neurology -Chigago-, American Medical Association, 2012, 69 (9), pp.1181-1185. ⟨10.1001/archneurol.2012.604⟩. ⟨hal-00790083⟩
  • Rémi Cuingnet, Emilie Gerardin, Jérôme Tessieras, Guillaume Auzias, Stéphane Lehéricy, et al.. Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database. NeuroImage, Elsevier, 2011, 56 (2), pp.766-81. ⟨10.1016/j.neuroimage.2010.06.013⟩. ⟨hal-00795739⟩
  • Marie Chupin, Emilie Gérardin, Rémi Cuingnet, Eric Bardinet, Didier Dormont, et al.. Segmentation ciblée d’images IRM et maladie d’Alzheimer. IRBM, Elsevier Masson, 2011. ⟨hal-01413898⟩
  • Leonardo Cruz de Souza, Fabian Corlier, Marie-Odile Habert, Olga Uspenskaya, Renaud Maroy, et al.. Similar amyloid-β burden in posterior cortical atrophy and Alzheimer's disease. Brain - A Journal of Neurology , Oxford University Press (OUP), 2011, 134 (Pt 7), pp.2036-43. ⟨10.1093/brain/awr130⟩. ⟨hal-00795743⟩
  • Rémi Cuingnet, Charlotte Rosso, Marie Chupin, Stéphane Lehéricy, Didier Dormont, et al.. Spatial regularization of SVM for the detection of diffusion alterations associated with stroke outcome. Medical Image Analysis, Elsevier, 2011, 15 (5), pp.729-37. ⟨10.1016/j.media.2011.05.007⟩. ⟨hal-00795741⟩
  • Yulia Worbe, Emilie Gerardin, Andreas Hartmann, Romain Valabrégue, Marie Chupin, et al.. Distinct structural changes underpin clinical phenotypes in patients with Gilles de la Tourette syndrome. Brain - A Journal of Neurology , Oxford University Press (OUP), 2010, 133 (Pt 12), pp.3649-60. ⟨10.1093/brain/awq293⟩. ⟨hal-00805386⟩
  • Marie Sarazin, Valérie Chauviré, Emilie Gerardin, Olivier Colliot, Serge Kinkingnéhun, et al.. The amnestic syndrome of hippocampal type in Alzheimer's disease: an MRI study. Journal of Alzheimer's Disease, IOS Press, 2010, 22 (1), pp.285-94. ⟨10.3233/JAD-2010-091150⟩. ⟨hal-00805385⟩
  • Marie Chupin, Emilie Gérardin, Rémi Cuingnet, Claire Boutet, Louis Lemieux, et al.. Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI. Hippocampus, Wiley, 2009, 19 (6), pp.579-87. ⟨10.1002/hipo.20626⟩. ⟨hal-00805428⟩
  • Emilie Gerardin, Gaël Chételat, Marie Chupin, Rémi Cuingnet, Béatrice Desgranges, et al.. Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. NeuroImage, Elsevier, 2009, 47 (4), pp.1476-86. ⟨10.1016/j.neuroimage.2009.05.036⟩. ⟨hal-00805434⟩
  • Loretxu Bergouignan, Marie Chupin, Yvonne Czechowska, Serge Kinkingnéhun, Cédric Lemogne, et al.. Can voxel based morphometry, manual segmentation and automated segmentation equally detect hippocampal volume differences in acute depression?. NeuroImage, Elsevier, 2009, 45 (1), pp.29-37. ⟨10.1016/j.neuroimage.2008.11.006⟩. ⟨hal-00805422⟩
  • Olivier Colliot, Gaël Chételat, Marie Chupin, Béatrice Desgranges, Benoît Magnin, et al.. Discrimination between Alzheimer disease, mild cognitive impairment, and normal aging by using automated segmentation of the hippocampus.. Radiology, Radiological Society of North America, 2008, 248 (1), pp.194-201. ⟨10.1148/radiol.2481070876⟩. ⟨inserm-00383265⟩
  • Olivier Colliot, Marie Chupin, Marie Sarazin, Marie-Odile Habert, Didier Dormont, et al.. L'apport de la neuroimagerie dans la maladie d'Alzheimer. PSN - psychiatrie, sciences humaines, neurosciences, Springer Verlag - Editions matériologiques 2008. ⟨hal-01413895⟩

Conference papers15 documents

  • Sébastian Ströer, Ludovic Fillon, Stéphane Epelbaum, Marc Teichmann, Agnès Michon, et al.. Étude quantitative des anomalies de signal flair de la substance blanche dans les pathologies neurodégénératives. SFNR 2017 - 44ème Congrès de la Société Française de Neuroradiologie, Mar 2017, Paris, France. pp.1, ⟨10.1016/j.neurad.2017.01.011⟩. ⟨hal-01562645⟩
  • Anne Bertrand, Stephane Epelbaum, Marie-Odile Habert, Harald Hampel, Hovagim Bakardjian, et al.. The INSIGHT cohort: baseline analysis of structural MR imaging in asymptomatic subjects at risk for Alzheimer's disease. AAIC, Jul 2016, Toronto, Canada. ⟨10.1016/j.jalz.2016.06.612⟩. ⟨hal-01439571⟩
  • Ludovic Fillon, Olivier Colliot, Dominique Hasboun, Bruno Dubois, Didier Dormont, et al.. Multi-template approaches for segmenting the hippocampus: the case of the SACHA software. Organization for Human Brain Mapping (OHBM), Jun 2015, Honolulu, United States. pp.5. ⟨hal-01188794⟩
  • Marie Chupin, Johanne Germain, Linda Marrakchi-Kacem, Emilie Gerardin, Claire Boutet, et al.. Segmentation of hippocampal inner structure using 7T in-vivo MRI: a robust anatomical protocol. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188838⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Julien Sein, Johanne Germain, Stéphane Epelbaum, et al.. Imaging of hippocampal inner structure at 7T: robust in-vivo acquisition protocol. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188843⟩
  • Emilie Gérardin, Joan Alexis Glaunès, Marie Chupin, Ana B. Graciano Fouquier, Kevin Roussel, et al.. Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States. ⟨hal-01188833⟩
  • Lorraine Hamelin, Leonardo Cruz de Souza, Fabian Corlier, Hélène Corne, Marie Chupin, et al.. Improved accuracy of the diagnosis of early Alzheimer’s disease using combined measures of hippocampal volume and sulcal morphology. AAN 2014 - Annual Meeting of the American Academy of Neurology, Apr 2014, Philadelphia, United States. ⟨hal-01114138⟩
  • Linda Marrakchi-Kacem, Alexandre Vignaud, Johanne Germain, Julien Sein, Thomas R Henry, et al.. Slab registration as a first step towards hippocampus subparts high resolution imaging at 7T. ISMRM 2014 - Annual Meeting of the International Society for Magnetic Resonance in Medicine, May 2014, Milan, Italy. ⟨hal-01114137⟩
  • Claire Cury, Joan Alexis Glaunès, Marie Chupin, Olivier Colliot. Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid. MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44. ⟨hal-01050590⟩
  • Thomas Samaille, Olivier Colliot, Rémi Cuingnet, Eric Jouvent, Hugues Chabriat, et al.. Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability. SPIE 2012 - Symposium on Medical Imaging, Feb 2012, San Diego, United States. pp.1-9, ⟨10.1117/12.910268⟩. ⟨hal-00817381⟩
  • Ludovic Fillon, Thomas Samaille, Eric Jouvent, Hugues Chabriat, Didier Dormont, et al.. Segmentation of white matter hyperintensities: a comparison of automatic methods on multicentre data. OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Beijing, China. ⟨hal-00817392⟩
  • Claire Cury, Joan Glaunès, Emilie Gerardin, Marie Chupin, Olivier Colliot. Modelling morphological variability of the hippocampus using manifold learning and large deformations. OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China. ⟨hal-00816100⟩
  • Thomas Samaille, Olivier Colliot, Didier Dormont, Marie Chupin. Automatic segmentation of age-related white matter changes on flair images: method and multicentre validation. ISBI 2011 - 8th IEEE International Symposium on Biomedical Imaging: from Nano to Macro, Mar 2011, Chicago, United States. pp.2014 - 2017, ⟨10.1109/ISBI.2011.5872807⟩. ⟨hal-00817386⟩
  • Thomas Samaille, Olivier Colliot, Didier Dormont, Marie Chupin. Automated segmentation of white matter lesions using FLAIR images.. OHBM 2010 - 16th International Conference on Functional Mapping of the Human Brain, Jun 2010, Barcelona, Spain. ⟨hal-00817395⟩
  • Rémi Cuingnet, Marie Chupin, Habib Benali, Olivier Colliot. Spatial and anatomical regularization of SVM for brain image analysis. Neural Information Processing Systems NIPS 2010, 2010, Vancouver, Canada. ⟨hal-01439123⟩

Preprints, Working Papers, ...1 document

  • Claire Cury, Joan Alexis Glaunès, Roberto Toro, Marie Chupin, Gunter Schumann, et al.. Statistical shape analysis of large datasets based on diffeomorphic iterative centroids. 2019. ⟨hal-01832191⟩