Projets Européen

Identifiants chercheur

  • IdHAL : olivier-collin

Réseaux sociaux

    Nombre de documents


    Olivier Collin - IRISA - Plate-forme GenOuest

    Article dans une revue19 documents

    • Thomas C. Mathers, Yazhou Chen, Gemy Kaithakottil, Fabrice Legeai, Sam T. Mugford, et al.. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, BioMed Central, 2017, 18, pp.27. <10.1186/s13059-016-1145-3>. <hal-01500475>
    • Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, et al.. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems, Elsevier, 2017, <10.1016/j.future.2017.01.012>. <hal-01516082>
    • Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Eric Rivals, et al.. Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads. GigaScience, BioMed Central, 2016, 5 (1), <10.1186/s13742-015-0105-2>. <hal-01280238>
    • Olivier Sallou, Paula D. Duek, Thomas A. Darde, Olivier Collin, Lydie Lane, et al.. PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. DATABASE, 2016, pp.baw070. <10.1093/database/baw070>. <hal-01342472>
    • François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, et al.. BioShaDock: a community driven bioinformatics shared Docker-based tools registry. F1000Research, Faculty of 1000, 2015, <10.12688/f1000research.7536.1>. <hal-01243520>
    • Thomas A Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjoeaud, et al.. The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2015, 43, pp.8. <10.1093/nar/gkv345>. <hal-01146120>
    • Anthony Bretaudeau, Cyril Monjeaud, Yvan Le Bras, Fabrice Legeai, Olivier Collin. BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ. GigaScience, BioMed Central, 2014, 4, pp.22. <hal-01240449>
    • Laëtitia Le Texier, Justine Durand, Amélie Lavault, Philippe Hulin, Olivier Collin, et al.. LIMLE, a New Molecule Over-Expressed following Activation, Is Involved in the Stimulatory Properties of Dendritic Cells. PLoS ONE, Public Library of Science, 2014, pp.10. <10.1371/journal.pone.0093894>. <hal-01093223>
    • Laëtitia Le Texier, Justine Durand, Amélie Lavault, Philippe Hulin, Olivier Collin, et al.. LIME, a new molecule associated with cytoskeleton is involved in stimulatory properties of DC. PLoS ONE, Public Library of Science, 2014, pp.10. <10.1371/journal.pone.0093894>. <hal-01183591>
    • Frédéric Chalmel, Aurélie Lardenois, Bertrand Evrard, Antoine D. Rolland, Olivier Sallou, et al.. High-resolution profiling of novel transcribed regions during rat spermatogenesis. Biology of Reproduction, Society for the Study of Reproduction, 2014, 91 (1), pp.5. <10.1095/biolreprod.114.118166>. <hal-01063924>
    • Stéphane Mahé, Marie Duhamel, Thomas Le Calvez, Laëtitia Guillot, Ludmila Sarbu, et al.. PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution. PLoS ONE, Public Library of Science, 2012, 7 (9), pp.e43117. <10.1371/journal.pone.0043117>. <hal-00756250>
    • Ramona Britto, Olivier Sallou, Olivier Collin, Grégoire Michaux, Michael Primig, et al.. GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2012, 40 (W1), pp.W458-W465. <10.1093/nar/gks380>. <inserm-00696905>
    • Salman Zeitouni, Olivier Collin, Mathieu Andraud, Gwennola Ermel, Isabelle Kempf. Fitness of macrolide resistant Campylobacter coli and Campylobacter jejuni.. Microbial Drug Resistance, Mary Ann Liebert, 2012, 18 (2), pp.101-8. <10.1089/mdr.2011.0188>. <hal-00796472>
    • Christophe Blanchet, Olivier Collin. Un déluge de données. Biofutur, Elsevier - Cachan : Lavoisier, 2011. <hal-00639962>
    • Fabrice Legeai, Shuji Shigenobu, Jean-Pierre Gauthier, John Colbourne, Claude Rispe, et al.. AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Molecular Biology, Wiley, 2010. <inria-00531562>
    • Aurélie Lardenois, Alexandre Gattiker, Olivier Collin, Frédéric Chalmel, Michael Primig. GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. Database -Weston-, Online Inc., 2010, pp.baq030. <10.1093/database/baq030>. <hal-00639961>
    • Alexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, et al.. MIMAS 3.0 is a Multiomics Information Management and Annotation System.. BMC Bioinformatics, BioMed Central, 2009, 10, pp.151. <10.1186/1471-2105-10-151>. <inserm-00516451>
    • Olivier Filangi, Yoann Beausse, Anthony Assi, Ludovic Legrand, Jean-Marc Larré, et al.. BioMAJ: a flexible framework for databanks synchronization and processing. Bioinformatics, Oxford University Press (OUP), 2008, 24 (16), pp.1823-1825. <10.1093/bioinformatics/btn325>. <inria-00327502>
    • Jonas Collén, Vincent Roeder, Sylvie Rousvoal, Olivier Collin, Bernard Kloareg, et al.. An expressed sequence tag analysis of thallus and regenerating protoplasts of Chondrus crispus (Gigartinales, Rhodophyceae). Journal of Phycology, Wiley, 2006. <inria-00327543>

    Communication dans un congrès13 documents

    • Francois Moreews, Olivier Sallou, Olivier Collin. An application suite based on the IFB Container as a Service platform. ECCB 2016, Sep 2016, Den Haag, Netherlands. 2016, <>. <hal-01394295>
    • François Moreews, Olivier Sallou, Yvan Le Bras, Grosjean Marie, Cyril Monjeaud, et al.. A curated Domain centric shared Docker registry linked to the Galaxy toolshed. Galaxy Community Conference 2015, Jul 2015, Norwich, United Kingdom. 2015, <>. <hal-01160514>
    • Anthony Bretaudeau, Yvan Le Bras, Cyril Monjeaud, Olivier Collin. Automatic update of reference data in Galaxy using BioMAJ.. Galaxy Day 2014, Dec 2014, Paris, France. <hal-01102421>
    • Francois Moreews, Yvan Le Bras, Olivier Dameron, Cyril Monjeaud, Olivier Collin. Integrating GALAXY workflows in a metadata management environment. Galaxy Community Conference, Jul 2014, Baltimore, United States. 2014. <hal-01093058>
    • Yvan Le Bras, Aurélien Roult, Cyril Monjoeaud, Bahin Mathieu, Olivier Quenez, et al.. Towards a Life Sciences Virtual Research Environment. JOBIM 2013, May 2013, Toulouse, France. <hal-01102438>
    • Anthony Bretaudeau, Olivier Sallou, Olivier Collin. Hadoopizer : a cloud environment for bio-informatics data analysis. journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France. <hal-00766066>
    • Christophe Blanchet, Clément Gauthey, Christophe Caron, Olivier Collin, Stephane Delmotte, et al.. RENABI GRISBI Infrastructure Distribuée pour la Bioinformatique. JOBIM 2011 - Journées Ouvertes Biologie Informatique Mathématique, Jun 2011, Paris, France. 2011. <hal-00640007>
    • Jonathan Piat, Francois Moreews, Olivier Collin, Dominique Lavenier, Alexandre Cornu. SLICEE: A Service oriented middleware for intensive scientific computation. IEEE. SERVICES 2011, Jul 2011, WASHINGTON DC, United States. 2011. <inria-00638694>
    • Tiphaine Martin, Christophe Caron, Olivier Collin. Présentation des Centres Bioinformatiques Régionaux : RENABI-GO. Journées GRISBI 2011 : scientifiques et technologique, May 2011, Lyon, France. 2011. <inria-00614475>
    • Philippe Picouet, Z. Doughi, Loraine Brillet, Erwan Corre, Christophe Caron, et al.. BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques. JOBIM, Sep 2010, Montpellier, France. 2010. <inria-00540815>
    • C. Blanchet, Clément Gauthey, Olivier Collin, Tiphaine Martin, Nouredine Melab, et al.. ReNaBi-GRISBI: grande infrastructure pour la bioinformatique. JOBIM 2010 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. 2010. <inria-00540940>
    • Fabrice Legeai, Jean-Pierre Gauthier, François Cousserans, Emmanuelle D'Alençon, Olivier Collin, et al.. From AphidBase and Lepido-DB to an Information System for Insect Plant pest genomics studies.. 1st Workshop on Information System for Insect Pest, Nov 2009, Rennes, France. 2009. <inria-00435823>
    • Marc Wessner, Martin Senger, Franck Samson, Philippe Picouet, François Moreews, et al.. BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network. Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France. 2008. <inria-00327528>

    Poster2 documents

    • Yvan Le Bras, Aurélien Roult, Cyril Monjoeaud, Bahin Mathieu, Olivier Quenez, et al.. e-Science in France, a Life science Western story. Galaxy Community Conference (GCC2014), Jun 2014, Baltimore, United States. <hal-01102432>
    • Anthony Bretaudeau, Olivier Collin. Dr Motifs: a web resource for pattern matching and discovery. JOBIM 2012, Jul 2012, Rennes, France. <hal-01102439>