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Odile Rogier - Ingénieur d'études Bioinformatique


Journal articles6 documents

  • Aurélien Chateigner, Marie-Claude Lesage-Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, et al.. Gene expression predictions and networks in natural populations supports the omnigenic theory. BMC Genomics, BioMed Central, 2020, 21 (1), pp.1-16. ⟨10.1186/s12864-020-06809-2⟩. ⟨hal-02902844⟩
  • Marie Pegard, Odile Rogier, Aurélie Berard, Patricia Faivre-Rampant, Marie-Christine Le Paslier, et al.. Sequence imputation from low density single nucleotide polymorphism panel in a black poplar breeding population. BMC Genomics, BioMed Central, 2019, 20, ⟨10.1186/s12864-019-5660-y⟩. ⟨hal-02621320⟩
  • Odile Rogier, Aurélien Chateigner, Souhila Amanzougarene, Marie-Claude Lesage Descauses, Sandrine Balzergue, et al.. Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra. BMC Genomics, BioMed Central, 2018, 19, ⟨10.1186/s12864-018-5239-z⟩. ⟨hal-02622249⟩
  • Guillem Rigaill, Sandrine Balzergue, Véronique Brunaud, Eddy Blondet, Andrea Rau, et al.. Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Briefings in Bioinformatics, Oxford University Press (OUP), 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩. ⟨hal-01595551⟩
  • France Denoeud, Jean-Marc Aury, Corinne da Silva, Benjamin Noel, Odile Rogier, et al.. Annotating genomes with massive-scale RNA sequencing. Genome Biology, BioMed Central, 2008, 9 (12), ⟨10.1186/gb-2008-9-12-r175⟩. ⟨hal-02664963⟩
  • Jean-Marc Aury, Corinne Cruaud, Valérie Barbe, Odile Rogier, Sophie Mangenot, et al.. High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMC Genomics, BioMed Central, 2008, 9, ⟨10.1186/1471-2164-9-603⟩. ⟨hal-02659381⟩

Conference papers4 documents

  • Clément Cuello, Françoise Laurans, Odile Rogier, Marie-Claude Lesage-Descauses, Nathalie Boizot, et al.. Integrative biology of secondary cell wall formation in poplar wood fibers and rays. XV Cell Wall Meeting, Jul 2019, Cambridge, United Kingdom. ⟨hal-02967651⟩
  • Célia Michotey, Christel Anger, François Ehrenmann, Odile Rogier, Véronique Jorge, et al.. Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. ⟨hal-02740283⟩
  • Odile Rogier, Souhila Amanzougarene, Marie-Claude Lesage Descauses, Sandrine Balzergue, Veronique Brunaud, et al.. Découverte de variants (SNPs) et génotypage à partir de données RNA-seq chez le peuplier noir. Colloque EPGV 2016 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2016, Angers, France. ⟨hal-01603542⟩
  • Wassim Lakhal, Nathalie Boizot, Marie-Claude Lesage Descauses, Odile Rogier, Véronique Laine-Prade, et al.. Both ChIP-SEQ and in planta gene modification demonstrate the involvement of MYB090 and MYB156 in secondary cell wall formation in poplar. INUPRAG-Meeting 2015, Oct 2015, Nancy, France. ⟨hal-01604786⟩

Poster communications15 documents

  • Romane Guilbaud, Chiara Biselli, Joukje Buiteveld, Luigi Cattivelli, Paul Copini, et al.. Development of a new tool (4TREE) for adapted genome selection in European tree species. GenTree, Jan 2020, Avignon, France. ⟨hal-02928391⟩
  • Annabelle Déjardin, Clément Cuello, Françoise Laurans, Marie-Claude Lesage-Descauses, Odile Rogier, et al.. Fiber-and ray-specific transcriptomics in poplar wood: what can we learn for the building of secondary cell walls?. 12èmes journées du Réseau Français des Parois, May 2019, Roscoff, France. 2019. ⟨hal-03289317⟩
  • Aurelie Canaguier, Véronique Jorge, Vanina Guérin, Odile Rogier, Vincent Segura, et al.. BSA-Seq : an efficient method to decipher a complex trait on Poplar, a highly heterozygous diploid genome. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. 1 p., 2018. ⟨hal-02736419⟩
  • Aurelie Canaguier, Véronique Jorge, Vanina Guérin, Odile Rogier, Isabelle Le Clainche, et al.. BSA-Seq : An efficient tool to characterize loci involved in the Poplar leaf rust resistance.. 7. International Poplar Symposium (IPS VII), Oct 2018, Buenos Aires, Brazil. 2018, IPS VII Poster Presentations. ⟨hal-02737648⟩
  • Odile Rogier, Souhila Amanzougarene, Marie-Claude Lesage Descauses, Sandrine Balzergue, Véronique Brunaud, et al.. SNP discovery and validation from RNA-seq data in black poplar. JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. 2017, JOBIM 2017 Journées Ouvertes Biologie Informatique Mathématiques. Actes. ⟨hal-02737565⟩
  • Aurélien Chateigner, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, Veronique Brunaud, et al.. Prediction of black poplar biofuel production: disentangling omnigenics with transcriptomics. Detecting the Genomic Signal of Polygenic Adaptation and the Role of Epistasis in Evolution, Aug 2017, Zurich, Switzerland. 45 p., 2017, Symposium: Detecting the Genomic Signal of Polygenic Adaptation and the Role of Epistasis in Evolution. ⟨hal-01607166⟩
  • Vincent Segura, Marie-Claude Lesage Descauses, Jean-Paul Charpentier, Kévin Kinkel, Claire Mandin, et al.. A systems biology approach for identifying candidate genes involved in the natural variability of biomass yield and chemical properties in black poplar. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. 2016, IUFRO Genomics and Forest Tree Genetics. Book of Abstract. ⟨hal-01456004⟩
  • Odile Rogier, Souhila Amanzougarene, Marie-Claude Lesage Descauses, Sandrine Balzergue, Veronique Brunaud, et al.. Nucleotide diversity of Populus nigra transcriptomes. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. 2016, IUFRO Genomics and Forest Tree Genetics. Book of Abstracts. ⟨hal-01456005⟩
  • Annabelle Dejardin, Wassim Lakhal, Nathalie Boizot, Marie-Claude Lesage Descauses, Odile Rogier, et al.. Unraveling the function of MYB090 and MYB156 in secondary cell wall formation in poplar using both ChIP-SEQ and in planta gene modification approach. 14. Cell Wall Meeting, Jun 2016, Chania, Grèce. 2016, XIV Cell Wall Meeting. Programme and Book of Abstracts. ⟨hal-02740921⟩
  • Marie Pégard, Véronique Jorge, Patricia Faivre-Rampant, Facundo Munoz, Odile Rogier, et al.. Preliminary training of a genomic evaluation in a breeding pedigree of Populus nigra L.. IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. 2016, Abstract Book. IUFRO Genomics and Forest Tree Genetics. ⟨hal-02743230⟩
  • Célia Michotey, Christel Anger, François Ehrenmann, Odile Rogier, Véronique Jorge, et al.. Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics. 35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015. ⟨hal-02795537⟩
  • Nicolas Richet, Mélanie Mauriat, Marie-Claude Lesage Descauses, Odile Rogier, Françoise Laurans, et al.. Integration of transcriptomic and proteomics approaches in characterizing short-term gravi-perception signaling networks in poplar wood.. 8. Plant Biomechanics International Conference PBM8, Nov 2015, Nagoya, Japan. Nagoya University, Proceedings of the Plant Biomechanics Conference, 253 p., 2015, 8th Plant Biomechanics International Conference. ⟨hal-02744040⟩
  • Véronique Jorge, Jean-Charles Leplé, Vincent Segura, Marie-Claude Lesage Descauses, Redouane El Malki, et al.. Identification, cibles et diversité de régulateurs expressionnels majeurs impliqués dans la production de biomasse chez le peuplier. Séminaire AIP Bio-ressources, Feb 2013, Paris, France. 2013, ⟨10.13140/RG.2.1.3449.0403⟩. ⟨hal-02807304⟩
  • Nicolas Richet, Delphine Gourcilleau, Odile Rogier, Marie-Claude Lesage Descauses, Nadège Millet, et al.. Identification of miRNAs and their target genes in developing xylem of tension wood by degradome analysis. 13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book. ⟨hal-02745523⟩
  • Delphine Gourcilleau, Nicolas Richet, Marie-Claude Lesage Descauses, Odile Rogier, Nadège Millet, et al.. Genome-wide characterisation of mechanical stress responsive miRNAs from xylem tissues of different poplar genotypes. 13. Cell Wall Meeting, Jul 2013, Nantes, France. 2013, The 13th Cell Wall Meeting : abstract book. ⟨hal-02745515⟩

Preprints, Working Papers, ...1 document

  • Aurélien Chateigner, Marie-Claude Lesage Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, et al.. The relationship between gene co-expression network connectivity and phenotypic prediction sheds light at the core of the omnigenic theory. 2019. ⟨hal-02788812⟩