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Number of documents

32

Laurent Noe Homepage


http://cristal.univ-lille.fr/~noe


Gregory Kucherov   

Journal articles13 documents

  • Martin Frith, Laurent Noé, Gregory Kucherov. Minimally-overlapping words for sequence similarity search. Bioinformatics, Oxford University Press (OUP), 2020, ⟨10.1093/bioinformatics/btaa1054⟩. ⟨hal-03087470⟩
  • Michal Startek, Slawomir Lasota, Maciej Sykulski, Adam Bulak, Laurent Noé, et al.. Efficient alternatives to PSI-BLAST. Bulletin of the Polish Academy of Sciences: Technical Sciences, Polish Academy of Sciences, 2012, 60 (3), pp.495-505. ⟨10.2478/v10175-012-0063-0⟩. ⟨hal-00749016⟩
  • Laurent Noé, Marta Gîrdea, Gregory Kucherov. Designing Efficient Spaced Seeds for SOLiD Read Mapping.. Advances in Bioinformatics, Hindawi Publishing Corporation, 2010, ⟨10.1155/2010/708501⟩. ⟨inria-00527029⟩
  • Marta Gîrdea, Laurent Noé, Gregory Kucherov. Back-translation for discovering distant protein homologies in the presence of frameshift mutations. Algorithms for Molecular Biology, BioMed Central, 2010, 5 (1), pp.6. ⟨10.1186/1748-7188-5-6⟩. ⟨hal-00784444⟩
  • Mikhail Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, et al.. On subset seeds for protein alignment. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2009, 6 (3), pp.483-494. ⟨10.1109/TCBB.2009.4⟩. ⟨inria-00354773⟩
  • Pierre Peterlongo, Laurent Noé, Dominique Lavenier, van Hoa Nguyen, Gregory Kucherov, et al.. Optimal neighborhood indexing for protein similarity search. BMC Bioinformatics, BioMed Central, 2008, 9 (534), ⟨10.1186/1471-2105-9-534⟩. ⟨inria-00340510⟩
  • Miklós Csűrös, Laurent Noé, Gregory Kucherov. Reconsidering the significance of genomic word frequencies.. Trends in Genetics, Elsevier, 2007, 23 (11), pp.543-6. ⟨10.1016/j.tig.2007.07.008⟩. ⟨inria-00448737⟩
  • Gregory Kucherov, Laurent Noé, Mihkail Roytberg. A unifying framework for seed sensitivity and its application to subset seeds.. Journal of Bioinformatics and Computational Biology, World Scientific Publishing, 2006, 4 (2), pp.553-69. ⟨10.1142/S0219720006001977⟩. ⟨hal-00018114v2⟩
  • Laurent Noé, Gregory Kucherov. YASS: enhancing the sensitivity of DNA similarity search.. Nucleic Acids Research, Oxford University Press, 2005, 33 (Web Server issue), pp.W540-3. ⟨10.1093/nar/gki478⟩. ⟨inria-00448742⟩
  • Laurent Noé, Gregory Kucherov. YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Research, Oxford University Press, 2005, 33 (Web server issue), pp.W540--W543. ⟨10.1093/nar/gki478⟩. ⟨inria-00000721⟩
  • Gregory Kucherov, Laurent Noé, Mikhail Roytberg. Multi-seed lossless filtration. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2005, 2 (1), pp.51--61. ⟨10.1109/TCBB.2005.12⟩. ⟨inria-00000718⟩
  • Gregory Kucherov, Laurent Noé, Mikhail Roytberg. Multiseed Lossless Filtration. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2005, 2 (1), pp.51-61. ⟨10.1109/TCBB.2005.12⟩. ⟨inria-00354810⟩
  • Laurent Noé, Gregory Kucherov. Improved hit criteria for DNA local alignment.. BMC Bioinformatics, BioMed Central, 2004, 5 (149), pp.1-9. ⟨10.1186/1471-2105-5-149⟩. ⟨inria-00448743⟩

Conference papers15 documents

  • Anna Gambin, Slawomir Lasota, Michal Startek, Maciej Sykulski, Laurent Noé, et al.. Subset seed extension to Protein BLAST. Bioinformatics 2011 - International Conference on Bioinformatics Models, Methods and Algorithms, Jan 2011, Rome, Italy. pp.149-158, ⟨10.5220/0003147601490158⟩. ⟨inria-00609791⟩
  • Laurent Noé, Marta Gîrdea, Gregory Kucherov. Seed design framework for mapping SOLiD reads. RECOMB, Aug 2010, Lisbon, Portugal. pp.384-396, ⟨10.1007/978-3-642-12683-3_25⟩. ⟨inria-00484642⟩
  • Marta Gîrdea, Laurent Noé, Gregory Kucherov. Back-translation for discovering distant protein homologies. the 9th International Workshop in Algorithms in Bioinformatics (WABI), Sep 2009, Philadelphia, United States. pp.108-120, ⟨10.1007/978-3-642-04241-6_10⟩. ⟨inria-00448741⟩
  • Mihkail Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, et al.. Efficient seeding techniques for protein similarity search. Proceedings of the 2nd International Conference BIRD, Jul 2008, Vienna, Austria. pp.466-478, ⟨10.1007/978-3-540-70600-7⟩. ⟨inria-00335564⟩
  • Pierre Peterlongo, Laurent Noé, Dominique Lavenier, Gilles Georges, Julien Jacques, et al.. Protein similarity search with subset seeds on a dedicated reconfigurable hardware. Parallel Bio-Computing, Sep 2007, Gdansk,, Poland. ⟨inria-00178325⟩
  • Gregory Kucherov, Laurent Noé, Mihkail Roytberg. Subset seed automaton. CIAA 2007, Jul 2007, Prague, Czech Republic. pp.180-191, ⟨10.1007/978-3-540-76336-9_18⟩. ⟨inria-00170414⟩
  • Mathieu Giraud, Laurent Noé, Gregory Kucherov, Dominique Lavenier. Recherches de motifs et de similarités en bioinformatique : modélisations, solutions logicielles et matérielles. MajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC, IRISA – IETR – LTSI, Nov 2005, Rennes/France, pp.18--37. ⟨inria-00001036⟩
  • Gregory Kucherov, Laurent Noé, Mikhail Roytberg. A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract). WABI, 2005, Majorca/Spain, Spain. ⟨inria-00001164⟩
  • Gregory Kucherov, Laurent Noé, Mikhail Roytberg. Multi-seed lossless filtration (Extended abstract). Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching - CPM'2004, Jul 2004, Istambul, Turkey. pp.297-310, ⟨10.1007/11557067_21⟩. ⟨inria-00001162⟩
  • Gregory Kucherov, Laurent Noé, Yann Ponty. Estimating seed sensitivity on homogeneous alignments. 4th Symposium on Bioinformatics and bioengineering - BIBE'2004, May 2004, Taichung, Taiwan. pp.387-394, ⟨10.1109/BIBE.2004.1317369⟩. ⟨inria-00001163⟩
  • Laurent Noé, Gregory Kucherov. YASS : Enhancing the sensitivity of DNA similarity search. Proceedings of the 4th International conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, Institute of Cytology and Genetics, 2004, Novosibirsk, Russia, pp.289-292. ⟨inria-00100004⟩
  • Alexey Vitreschak, Laurent Noé, Gregory Kucherov. Computer analysis of multiple repeats in bacteria. The fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p. ⟨inria-00100088⟩
  • Laurent Noé, Gregory Kucherov. Improved hit criteria for DNA local alignment. Proceedings of the 5th Open Days in Biology, Computer Science and Mathematics - JOBIM'2004, 2004, Montreal, Canada, 11 p. ⟨inria-00099999⟩
  • Gregory Kucherov, Laurent Noé. YASS : similarity search in DNA sequences. The Seventh Annual International Conference on Research in Computational Molecular Biology - RECOMB'03, Apr 2003, Berlin, Germany, 1 p. ⟨inria-00099599⟩
  • Laurent Noé, Gregory Kucherov. A new method of finding similarity regions in DNA sequences. European Conference on Computational Biology - ECCB'2002, Oct 2002, Saarbrücken, Germany, pp.173-174. ⟨inria-00100859⟩

Preprints, Working Papers, ...1 document

  • Martin Frith, Laurent Noé, Gregory Kucherov. Minimally-overlapping words for sequence similarity search. 2020. ⟨hal-03049398⟩

Reports3 documents

  • Gregory Kucherov, Laurent Noé, Mikhail Roytberg. A unifying framework for seed sensitivity and its application to subset seeds. [Research Report] RR-5374, INRIA. 2004, pp.21. ⟨inria-00070629⟩
  • Laurent Noé, Gregory Kucherov. YASS: Similarity search in DNA sequences. [Research Report] RR-4852, INRIA. 2003, pp.20. ⟨inria-00071731⟩
  • Gregory Kucherov, Laurent Noé, Yann Ponty. Estimating seed sensitivity on homogeneous alignments. [Research Report] RR-5047, INRIA. 2003, pp.17. ⟨inria-00071536⟩