Accéder directement au contenu

Ninon Burgos

24
Documents
Identifiants chercheurs

Présentation

[Ninon Burgos](https://ninonburgos.com/) is a CNRS researcher at the [Paris Brain Institute](http://icm-institute.org/) in the [ARAMIS Lab](http://www.aramislab.fr/). She completed her PhD at University College London in the [Centre for Medical Image Computing](http://www.ucl.ac.uk/medical-image-computing). She received an MSc in Biomedical Engineering from Imperial College London and an Engineering degree from a French Graduate School in Electrical Engineering and Computer Science (ENSEA). Her research currently focuses on the development of computational imaging tools to improve the understanding and diagnosis of neurological diseases.

Publications

elina-thibeau-sutre
Image document

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
BMC Medical Imaging, 2024, 24 (1), pp.67. ⟨10.1186/s12880-024-01242-3⟩
Article dans une revue hal-03497645v2
Image document

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Article dans une revue hal-03351976v2
Image document

Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder

Clément Chadebec , Elina Thibeau-Sutre , Ninon Burgos , Stéphanie Allassonnière
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022, ⟨10.1109/TPAMI.2022.3185773⟩
Article dans une revue hal-03214093v1
Image document

Deep learning for brain disorders: from data processing to disease treatment

Ninon Burgos , Simona Bottani , Johann Faouzi , Elina Thibeau-Sutre , Olivier Colliot
Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩
Article dans une revue hal-03070554v1
Image document

Clinica: an open source software platform for reproducible clinical neuroscience studies

Alexandre Routier , Ninon Burgos , Mauricio Diaz , Michael Bacci , Simona Bottani
Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩
Article dans une revue hal-02308126v4
Image document

Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review

Manon Ansart , Stéphane Epelbaum , Giulia Bassignana , Alexandre Bône , Simona Bottani
Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/j.media.2020.101848⟩
Article dans une revue hal-02337815v2
Image document

Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation

Junhao Wen , Elina Thibeau-Sutre , Mauricio Diaz-Melo , Jorge Samper-González , Alexandre Routier
Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/j.media.2020.101694⟩
Article dans une revue hal-02562504v2
Image document

Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Article dans une revue hal-03136463v1
Image document

Recent advances in the open-source ClinicaDL software for reproducible neuroimaging with deep learning

Ravi Hassanaly , Camille Brianceau , Mauricio Diaz , Sophie Loizillon , Elina Thibeau-Sutre
SPIE Medical Imaging, Feb 2024, San Diego, United States
Communication dans un congrès hal-04419141v1
Image document

How can data augmentation improve attribution maps for disease subtype explainability?

Elina Thibeau-Sutre , Jelmer M Wolterink , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03966737v1
Image document

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩
Communication dans un congrès hal-03478798v1
Image document

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Olivier Colliot , Ninon Burgos
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-04279014v1
Image document

Advances in the Clinica software platform for clinical neuroimaging studies

Omar El Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-03728243v1
Image document

MRI field strength predicts Alzheimer's disease: a case example of bias in the ADNI data set

Elina Thibeau-Sutre , Baptiste Couvy-Duchesne , Didier Dormont , Olivier Colliot , Ninon Burgos
ISBI 2022 - International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. ⟨10.1109/ISBI52829.2022.9761504⟩
Communication dans un congrès hal-03542213v1
Image document

Clinica: an open-source software platform for reproducible clinical neuroscience studies

Omar El-Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
MRI Together 2021 - A global workshop on Open Science and Reproducible MR Research, Dec 2021, Online, France
Communication dans un congrès hal-03513920v1
Image document

Visualization approach to assess the robustness of neural networks for medical image classification

Elina Thibeau-Sutre , Olivier Colliot , Didier Dormont , Ninon Burgos
SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨10.1117/12.2548952⟩
Communication dans un congrès hal-02370532v3
Image document

New longitudinal and deep learning pipelines in the Clinica software platform

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jorge Samper-González , Adam Wild
OHBM 2020 - Annual meeting of the Organization for Human Brain Mapping, Jun 2020, Montreal / Virtual, Canada
Communication dans un congrès hal-02549242v1
Image document

New advances in the Clinica software platform for clinical neuroimaging studies

Alexandre Routier , Arnaud Marcoux , Mauricio Diaz Melo , Jérémy Guillon , Jorge Samper-González
OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩
Communication dans un congrès hal-02132147v2
Image document

How serious is data leakage in deep learning studies on Alzheimer's disease classification?

Junhao Wen​ , Elina Thibeau--Sutre​ , Jorge Samper-González​ , Alexandre M Routier , Simona Bottani​
2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy
Communication dans un congrès hal-02105133v2