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Ninon Burgos

26
Documents
Identifiants chercheurs

Présentation

[Ninon Burgos](https://ninonburgos.com/) is a CNRS researcher at the [Paris Brain Institute](http://icm-institute.org/) in the [ARAMIS Lab](http://www.aramislab.fr/). She completed her PhD at University College London in the [Centre for Medical Image Computing](http://www.ucl.ac.uk/medical-image-computing). She received an MSc in Biomedical Engineering from Imperial College London and an Engineering degree from a French Graduate School in Electrical Engineering and Computer Science (ENSEA). Her research currently focuses on the development of computational imaging tools to improve the understanding and diagnosis of neurological diseases.

Publications

26971
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Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data

Sophie Loizillon , Simona Bottani , Aurélien Maire , Sebastian Ströer , Didier Dormont
Medical Image Analysis, 2024, 93, pp.103073. ⟨10.1016/j.media.2023.103073⟩
Article dans une revue hal-03910451v2
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Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
BMC Medical Imaging, 2024, 24 (1), pp.67. ⟨10.1186/s12880-024-01242-3⟩
Article dans une revue hal-03497645v2
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Evaluation of pseudo-healthy image reconstruction for anomaly detection with deep generative models: Application to brain FDG PET

Ravi Hassanaly , Camille Brianceau , Maëlys Solal , Olivier Colliot , Ninon Burgos
Journal of Machine Learning for Biomedical Imaging, 2024, Special Issue for Generative Models, 2, pp.611. ⟨10.59275/j.melba.2024-b87a⟩
Article dans une revue hal-04315738v2
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Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Dario Saracino , Sebastian Stroer
Medical Image Analysis, 2023, 89, pp.102903
Article dans une revue hal-03656136v2
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Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse

Simona Bottani , Ninon Burgos , Aurélien Maire , Adam Wild , Sébastian Ströer
Medical Image Analysis, 2022, 75, ⟨10.1016/j.media.2021.102219⟩
Article dans une revue hal-03154792v4
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Alexandre M Routier , Didier Dormont
Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩
Article dans une revue hal-03351976v2
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Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder

Clément Chadebec , Elina Thibeau-Sutre , Ninon Burgos , Stéphanie Allassonnière
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022, ⟨10.1109/TPAMI.2022.3185773⟩
Article dans une revue hal-03214093v1
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Anomaly detection for the individual analysis of brain PET images

Ninon Burgos , Jorge M. Cardoso , Jorge Samper-González , Marie-Odile Habert , Stanley Durrleman​
Journal of Medical Imaging, 2021, 8 (02), pp.024003. ⟨10.1117/1.JMI.8.2.024003⟩
Article dans une revue hal-03193306v1
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AD Course Map charts Alzheimer’s disease progression

Igor Koval , Alexandre Bône , Maxime Louis , Thomas Lartigue , Simona Bottani
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-87434-1⟩
Article dans une revue hal-01964821v3
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Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge

Baptiste Couvy-Duchesne , Johann Faouzi , Benoît Martin , Elina Thibeau-Sutre , Adam Wild
Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩
Article dans une revue hal-03136463v1
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Recent advances in the open-source ClinicaDL software for reproducible neuroimaging with deep learning

Ravi Hassanaly , Camille Brianceau , Mauricio Diaz , Sophie Loizillon , Elina Thibeau-Sutre
SPIE Medical Imaging, Feb 2024, San Diego, United States
Communication dans un congrès hal-04419141v1
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Leveraging healthy population variability in deep learning unsupervised anomaly detection in brain FDG PET

Maëlys Solal , Ravi Hassanaly , Ninon Burgos
SPIE Medical Imaging, Feb 2024, San Diego (California), United States
Communication dans un congrès hal-04291561v2
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Unsupervised anomaly detection in 3D brain FDG PET: A benchmark of 17 VAE-based approaches

Ravi Hassanaly , Camille Brianceau , Olivier Colliot , Ninon Burgos
Deep Generative Models workshop at the 26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023), Oct 2023, Vancouver, Canada
Communication dans un congrès hal-04185304v1
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From Nipype to Pydra: a Clinica story

Ghislain Vaillant , Nicolas Gensollen , Matthieu Joulot , Omar El-Rifai , Mauricio Diaz
OHBM 2023 - Annual meeting of the Organization for Human Brain Mapping, Jul 2023, Montreal, Canada
Communication dans un congrès hal-04278898v1
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A2V: A Semi-Supervised Domain Adaptation Framework for Brain Vessel Segmentation via Two-Phase Training Angiography-to-Venography Translation

Francesco Galati , Daniele Falcetta , Rosa Cortese , Barbara Casolla , Ferran Prados
BMVC 2023, 34th British Machine Vision Conference, Nov 2023, Aberdeen, United Kingdom
Communication dans un congrès hal-04195756v2
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Simulation-based evaluation framework for deep learning unsupervised anomaly detection on brain FDG PET

Ravi Hassanaly , Simona Bottani , Benoît Sauty , Olivier Colliot , Ninon Burgos
SPIE Medical Imaging, Feb 2023, San Diego, United States
Communication dans un congrès hal-03835015v2
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Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models

Simona Bottani , Elina Thibeau-Sutre , Aurélien Maire , Sebastian Ströer , Didier Dormont
SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩
Communication dans un congrès hal-03478798v1
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Advances in the Clinica software platform for clinical neuroimaging studies

Omar El Rifai , Mauricio Diaz Melo , Ravi Hassanaly , Matthieu Joulot , Alexandre M Routier
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-03728243v1
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ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing

Elina Thibeau-Sutre , Mauricio Diaz , Ravi Hassanaly , Olivier Colliot , Ninon Burgos
OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Communication dans un congrès hal-04279014v1
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Interpretability of Machine Learning Methods Applied to Neuroimaging

Elina Thibeau-Sutre , Sasha Collin , Ninon Burgos , Olivier Colliot
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_22⟩
Chapitre d'ouvrage hal-03615163v2
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Validation and evaluation metrics for medical and biomedical image synthesis

Tereza Nečasová , Ninon Burgos , David Svoboda
Biomedical Image Synthesis and Simulation, Elsevier, pp.573-600, 2022, 978-0-12-824349-7. ⟨10.1016/B978-0-12-824349-7.00032-3⟩
Chapitre d'ouvrage hal-03721947v1
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Neuroimaging in Machine Learning for Brain Disorders

Ninon Burgos
Olivier Colliot. Machine Learning for Brain Disorders, Springer, In press
Chapitre d'ouvrage hal-03814787v1
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Future trends in medical and biomedical image synthesis

Ninon Burgos , Sotirios A Tsaftaris , David Svoboda
Ninon Burgos; David Svoboda. Biomedical Image Synthesis and Simulation, Elsevier, pp.643-645, 2022, 978-0-12-824349-7. ⟨10.1016/B978-0-12-824349-7.00034-7⟩
Chapitre d'ouvrage hal-03721950v1
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Medical image synthesis using segmentation and registration

Ninon Burgos
Biomedical Image Synthesis and Simulation, Elsevier, pp.55-77, 2022, 9780128243497. ⟨10.1016/B978-0-12-824349-7.00011-6⟩
Chapitre d'ouvrage hal-03721697v1
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Introduction to medical and biomedical image synthesis

David Svoboda , Ninon Burgos
Ninon Burgos; David Svoboda. Biomedical Image Synthesis and Simulation, Elsevier, pp.1-3, 2022, 978-0-12-824349-7. ⟨10.1016/B978-0-12-824349-7.00008-6⟩
Chapitre d'ouvrage hal-03721967v1