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Number of documents

42

CV Nicolas Vergne


Journal articles13 documents

  • Vlad,stefan Barbu, Caroline Berard, Dominique Cellier, Mathilde Sautreuil, Nicolas Vergne. SMM: An R Package for Estimation and Simulation of Discrete-time semi-Markov Models. The R Journal, R Foundation for Statistical Computing, 2019, 10 (2), pp.226. ⟨10.32614/RJ-2018-050⟩. ⟨hal-02096101⟩
  • Vlad Barbu, Caroline Berard, Dominique Cellier, Mathilde Sautreuil, Nicolas Vergne. SMM: An R Package for Estimation and Simulation of Discrete-time semi-Markov Models. The R Journal, Norman Matloff, 2018. ⟨hal-02337224⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Caroline Berard, Nicolas Vergne, Thierry Lecroq, et al.. Comparative in depth RNA sequencing of P. tricornutum’s morphotypes reveals specific features of the oval morphotype. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.14340. ⟨10.1038/s41598-018-32519-7⟩. ⟨hal-01894856⟩
  • Vlad Stefan Barbu, Nicolas Vergne. Reliability and survival analysis for drifting Markov models: modeling and estimation. Methodology and Computing in Applied Probability, Springer Verlag, 2018, ⟨10.1007/s11009-018-9682-8⟩. ⟨hal-02337216⟩
  • C. Derambure, G. Dzangue-Tchoupou, C. Bérard, N. Vergne, M. Hiron, et al.. Pre-silencing of genes involved in the electron transport chain (ETC) pathway is associated with responsiveness to abatacept in rheumatoid arthritis. Arthritis Research and Therapy, BioMed Central, 2017, 19 (1), ⟨10.1186/s13075-017-1319-8⟩. ⟨hal-02337207⟩
  • Minh Vu Chuong Nguyen, Xavier Romand, Candice Trocme, Anaïs Courtier, Hubert Marotte, et al.. Value of ultrasonography as a marker of early response to abatacept in patients with rheumatoid arthritis and an inadequate response to methotrexate: results from the APPRAISE study. Annals of the Rheumatic Diseases, BMJ Publishing Group, 2016, 75 (10), pp.1763-1769. ⟨10.1136/annrheumdis-2015-207709⟩. ⟨hal-02467707⟩
  • C. Larédo, O. David, R. Leblois, B. Schaeffer, N. Vergne. Coalescent-based DNA Barcoding: Multilocus and Robustness. Journal of Computational Biology, Mary Ann Liebert, 2012, 19 (3), pp.271-278. ⟨hal-00705702⟩
  • Olivier David, Catherine Larédo, Raphael Leblois, Brigitte Schaeffer, Nicolas Vergne. Coalescent-based DNA barcoding: multilocus analysis and robustness. Journal of Computational Biology, Mary Ann Liebert, 2012, ⟨10.1089/cmb.2011.0122⟩. ⟨hal-02337205⟩
  • Olivier David, Catherine Laredo, Raphaël Leblois, Brigitte Schaeffer, Nicolas Vergne. Coalescent-Based DNA Barcoding: Multilocus Analysis and Robustness. Journal of Computational Biology, Mary Ann Liebert, 2012, 19 (3), pp.271-278. ⟨hal-02642847⟩
  • Miguel Abadi, Nicolas Vergne. Sharp error terms for return time statistics under mixing conditions *. Journal of Theoretical Probability, Springer, 2009. ⟨hal-02337198⟩
  • Nicolas Vergne, Miguel Abadi. Poisson approximation for search of rare words in DNA sequences. Alea: Estudos Neolatinos, Unversidade Federal do Rio de Janeiro, 2008, 4, pp.223 - 244. ⟨hal-02337193⟩
  • Miguel Abadi, Nicolas Vergne. Sharp errors for point-wise Poisson approximations in mixing processes. Nonlinearity, IOP Publishing, 2008, 21 (12), pp.2871-2885. ⟨10.1088/0951-7715/21/12/008⟩. ⟨hal-02337199⟩
  • Nicolas Vergne. Drifting Markov Models with Polynomial Drift and Applications to DNA Sequences. Statistical Applications in Genetics and Molecular Biology, De Gruyter, 2008. ⟨hal-02337190⟩

Conference papers17 documents

  • Vlad Stefan Barbu, Nicolas Vergne. Modeling and estimation by means of drifting Markov and semi-Markov chains. Quantitative Methods for Intangibles Evaluation, Dec 2019, Ancone, Italy. ⟨hal-02440001⟩
  • Pierre-Julien Viailly, Ahmad Abdel Sater, Hélène Dauchel, Alison Celebi, Caroline Bérard, et al.. mCNA : a new methodology to improve high-resolution copy number variation analysis from next generation sequencing using unique molecular identifiers.. JOBIM, 2019, Nantes, France. ⟨hal-02337236⟩
  • Vlad Stefan Barbu, Geoffray Brelurut, Annthomy Gilles, Arnaud Lefebvre, Victor Mataigne, et al.. DRIMM'R and WebDRIMM: an R package and a web interface for drifting Markov model estimation and reliability. JDS, 2018, Paris, France. ⟨hal-02337261⟩
  • Nicolas Vergne, Vlad Stefan Barbu. Drifting Markov and semi-Markov models: modeling, estimation and applications.. STODEP, 2018, Rouen, France. ⟨hal-02337244⟩
  • Mathilde Sautreuil, Caroline Bérard, Gaëlle Chagny, Antoine Channarond, Angelina Roche, et al.. Modèle de mélange binomial négatif bivarié pour l'analyse de données RNA-Seq. JDS, 2018, Paris, France. ⟨hal-02337265⟩
  • Vlad Stefan Barbu, Caroline Bérard, Dominique Cellier, Mathilde Sautreuil, Nicolas Vergne. Estimation paramétrique des chaînes semi-markoviennes pour des données censurées. JDS, 2017, Avignon, France. ⟨hal-02337254⟩
  • Vlad Stefan Barbu, Nicolas Vergne. Reliability and survival analysis for drifting Markov models: modelling and estimation. Mathematical Methods in Reliability, 2017, Grenoble, France. ⟨hal-02337306⟩
  • Vlad Stefan Barbu, Nicolas Vergne. Drifting Markov models applied in reliability theory and survival analysis. JDS, 2017, Avignon, France. ⟨hal-02337248⟩
  • Clément Jourand, John Komar, Adé D, Nicolas Vergne, Régis Thouvarecq. Rendre compte de la dynamique de l’activité des élèves en course d’orientation: application de modèles de Markov dérivant aux données d’expérience. 16ème congrès de l’Association des Chercheurs en Activité physique et Sportive, 2015, Nantes, France. ⟨hal-02337328⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Caroline Bérard, Nicolas Vergne, Thierry Lecroq, et al.. Etude des mécanismes de morphogenèse chez la diatomée modèle Phaeodactylum tricornutum par séquençage d’ARN à haut débit (RNA-Seq). Journées phycologiques de France, Sep 2015, Vannes, France. ⟨hal-02076884⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Caroline Bérard, Nicolas Vergne, Thierry Lecroq, et al.. RNA Sequencing technology will help deciphering the morphogenesis mechanisms in the model diatom Phaeodactylum tricornutum. Journée scientifique du GRR-IRIB, Jun 2015, Mont-Saint-Aignan, France. ⟨hal-02076895⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Wassim Tair, Caroline Bérard, Nicolas Vergne, et al.. Elucidation of the morphogenesis mechanisms in the diatom P. tricornutum using RNA sequencing technology. 17ième Journées de l’Ecole Doctorale NBISE, Apr 2014, Le Havre, France. ⟨hal-02109139⟩
  • Madalina Olteanu, Nicolas Vergne, Brigitte Schaeffer, Olivier David, Catherine Laredo. Représentation des données praomys à l'aide des cartes autoorganisées. Projet IFORA, Colloque final de restitution (Agropolis International, Montpellier). ANR, Jun 2010, Montpellier, France. ⟨hal-02753761⟩
  • Catherine Laredo, Brigitte Schaeffer, Nicolas Vergne, Olivier David, Frédéric Austerlitz, et al.. Taux d’erreurs des méthodes phylogénétiques et des méthodes statistiques de classification pour le Barcode ADN. Projet IFORA, Jun 2010, Montpellier, France. pp.45. ⟨hal-02754486⟩
  • Catherine Larédo, Nicolas Vergne, Frederic Austerlitz, Olivier David, Brigitte Schaeffer, et al.. Error Rates of Phylogenetic and supervised Classification Algorithms in DNA Barcoding.. Third International Barcode of Life Conference, 2009, Mexico, Mexico. ⟨hal-02338011⟩
  • Catherine Laredo, Frédéric Austerlitz, Olivier David, Brigitte Schaeffer, Kevin Bleakley, et al.. Error rates in phylogenetic and supervised classification algorithms in DNA Barcoding. Third International Barcode of Life Conference, Nov 2009, Mexico city, Mexico. ⟨hal-02756456⟩
  • Nicolas Vergne. Poisson approximation for search of rare words in DNA sequences.. Workshop on "Hitting, returning and matching in dynamical systems, informa- tion theory and mathematical biology", 2008, Eindhoven, Netherlands. ⟨hal-02338014⟩

Poster communications8 documents

  • Mathilde Sautreuil, Nicolas Vergne, Antoine Channarond, Angelina Roche, Gaëlle Chagny, et al.. Bivariate Negative Binomial Mixture Model for the analysis of RNA-seq data. JOBIM, 2017, Lille, France. ⟨hal-02337246⟩
  • Chloé Cabot, Mary Mélissa, Chadi Saad, Alexandre Renaux, Alexis Bertrand, et al.. GC- VC/DGE : a user-friendly web application for Going over Concordance across results from NGS bioinformatics analytic pipelines. ECCB, 2014, Strasbourg, France. ⟨hal-02338005⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Wassim Tair, Caroline Bérard, Nicolas Vergne, et al.. Elucidation of the morphogenesis mechanisms in the diatom P. tricornutum using RNA sequencing technology. 17ième Journées de l’Ecole Doctorale NBISE, Apr 2014, Le Havre, France. ⟨hal-02114318⟩
  • Marie-Christine Kiefer-Meyer, Clément Ovide, Wassim Tair, Caroline Bérard, Nicolas Vergne, et al.. Towards a better understanding of Phaeodactylum tricornutum’s morphogenesis. Plant Genomics Congress, May 2013, Londres, United Kingdom. ⟨hal-02119212⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Wassim Tair, Caroline Bérard, Nicolas Vergne, et al.. RNA-seq : a new tool to study Phaeodactylum tricornutum morphogenesis. 2nd Journée de l’Institut de Recherche et d’Innovation Biomédicale, Jun 2013, Rouen, France. ⟨hal-02119202⟩
  • Clément Ovide, Marie-Christine Kiefer-Meyer, Wassim Tair, Caroline Bérard, Nicolas Vergne, et al.. Towards a better understanding of Phaeodactylum tricornutum’s morphogenesis. EMBO Workshop, The molecular Life of diatoms, Jun 2013, Paris, France. ⟨hal-02125074⟩
  • Nicolas Vergne. Les chaînes de Markov régulées. JOBIM, 2005, Lyon, France. ⟨hal-02337981⟩
  • Nicolas Vergne. Drifting Markov models.. ECCB, 2005, Madrid, Spain. ⟨hal-02337987⟩

Documents associated with scientific events1 document

  • Nicolas Vergne. Méthode bayésienne de classification des séquences Barcode basée sur la coalescence. Journées MAS et Journée en l'honneur de Jacques Neveu, Aug 2010, Talence, France. ⟨inria-00510191⟩

Directions of work or proceedings1 document

  • Vlad Stefan Barbu, Nicolas Vergne. Statistical Topics and Stochastic Models for Dependent Data - Applications in Reliability, Survival Analysis and Related Fields. Iste-Wiley. 2020. ⟨hal-02437845⟩

Theses1 document

  • Nicolas Vergne. Chaînes de Markov régulées et approximation de Poisson pour l'analyse de séquences biologiques. Mathématiques [math]. Université d'Evry-Val d'Essonne, 2008. Français. ⟨tel-00322434⟩

Software1 document

  • Vlad Stefan Barbu, Caroline Bérard, Mathilde Sautreuil, Dominique Cellier, Nicolas Vergne. R package SMM, Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models. 2017. ⟨hal-02337300⟩