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Keywords

Blastocystis Apoptosis Cells Transcriptome Animals Avalanche rocheuse Automatic method Amphibien 3' Untranslated Regions Gene Expression Regulation Developmental Biosynthetic pathway Amphibian Assignment BID Thyroid hormone Anura Cdna Arteriohepatic dysplasia Xenopus
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Number of documents

55

Nicolas Pollet

Born  september 3, 1968 in Paris, France. CR1 CNRS.

 

Adress           Evolution, Génomes, Comportement et Ecologie; CNRS, 1 Avenue de la Terrasse; Bat 13; 91198 GIF SUR YVETTE

 

Tel  +33 (0)1 69 82 37 10 e-mail               Nicolas.Pollet@egce.cnrs-gif.fr

 

 

 

Positions and Education

 

2015 - Polygnome team leader, EGCE, CNRS UMR9191, Director Dr C. Montchamp.

 

2009 –Metamorphosys team leader iSSB, CNRS FRE3561, Director Prof. J.L. Faulon.

 

2007 –Team leader of the group “Functional genomics in Xenopus tropicalis”, CNRS UMR 8080, Director Pr. Maurice Wegnez

 

2005 – “Habilitation à Diriger des Recherches” - Université Paris-Sud, Orsay.

 

2000 – Chargé de Recherche au CNRS - CNRS UMR 8080 Développement et Evolution, Director Pr. Maurice Wegnez

 

1999-2000 : "Guest scientist" Dpt Molecular Embryology (Dir. Christof Niehrs), DKFZ, Heidelberg, Germany.

 

1997-1999 : "Marie Curie Research Fellow" , Dpt Molecular Embryology (Dir. Christof Niehrs), DKFZ, Heidelberg, Germany.

 

1997 : PhD in developmental physiology, Université Denis Diderot-Paris 7.

 

1992 : DEA in developmental physiology, Université Denis Diderot-Paris 7.

 

Journal articles43 documents

  • Sophie Dhorne-Pollet, Eric Barrey, Nicolas Pollet. A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants. BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-07183-9⟩. ⟨hal-03104281⟩
  • Sophie Dhorne-Pollet, Eric Barrey, Nicolas Pollet. A new method for long-read sequencing of animal mitochondrial genomes: application to the identification of equine mitochondrial DNA variants. BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-07183-9⟩. ⟨hal-03028843⟩
  • Naoji Yubuki, Luis Xavier Galindo, Guillaume Reboul, Purificacion Lopez-Garcia, Matthew Brown, et al.. Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina - Blastocystis Stramenopile Lineage. Molecular Biology and Evolution, Oxford University Press (OUP), 2019, 37, pp.651-659. ⟨10.1093/molbev/msz250⟩. ⟨hal-02367918⟩
  • Santosh Kumar Maharana, Nicolas Pollet, Gerhard Schlosser. Identification of novel cis-regulatory elements of Eya1 in Xenopus laevis using BAC recombineering. Scientific Reports, Nature Publishing Group, 2017, 7 (1), ⟨10.1038/s41598-017-15153-7⟩. ⟨hal-02341398⟩
  • Odile J. Bronchain, Albert Chesneau, Anne-Hélène Monsoro-Burq, Pascale Jolivet, Elodie Paillard, et al.. Implication of thyroid hormone signaling in neural crest cells migration: Evidence from thyroid hormone receptor beta knockdown and NH3 antagonist studies.. Molecular and Cellular Endocrinology, Elsevier, 2017, 439, pp.233-246. ⟨10.1016/j.mce.2016.09.007⟩. ⟨hal-01505244⟩
  • Marion Bougerol, Frédéric Auradé, François M Lambert, Didier Le Ray, Denis Combes, et al.. Generation of BAC Transgenic Tadpoles Enabling Live Imaging of Motoneurons by Using the Urotensin II-Related Peptide (ust2b) Gene as a Driver. PLoS ONE, Public Library of Science, 2015, 10 (2), pp.e0117370. ⟨10.1371/journal.pone.0117370⟩. ⟨hal-01230978⟩
  • Marion Bougerol, Frédéric Auradé, François Lambert, Didier Le Ray, Denis Combes, et al.. Generation of BAC Transgenic Tadpoles Enabling Live Imaging of Motoneurons by Using the Urotensin II-Related Peptide (ust2b) Gene as a Driver. PLoS ONE, Public Library of Science, 2015, ⟨10.1371/journal.pone.0117370⟩. ⟨hal-02347317⟩
  • Bruno Colombo, Thibault Scalvenzi, Sarah Benlamara, Nicolas Pollet. Microbiota and Mucosal Immunity in Amphibians. Frontiers in Immunology, Frontiers, 2015, 6, ⟨10.3389/fimmu.2015.00111⟩. ⟨hal-02341660⟩
  • Léna Vouillot, Aurore Thelie, Nicolas Pollet. Comparison of T7E1 and Surveyor Mismatch Cleavage Assays to Detect Mutations Triggered by Engineered Nucleases. G3, Genetics Society of America, 2015, 5 (3), pp.407-415. ⟨10.1534/g3.114.015834⟩. ⟨hal-02341670⟩
  • Jean-Louis Plouhinec, Daniel Roche, Caterina Perogaro, Ana Leonor Figueiredo, Frédérique Maczkowiak, et al.. Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers. Developmental Biology, Elsevier, 2014, 386 (2), pp.461-472. ⟨10.1016/j.ydbio.2013.12.010⟩. ⟨hal-01101867⟩
  • Thibault Scalvenzi, Nicolas Pollet. Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA. Molecular Phylogenetics and Evolution, Elsevier, 2014, 81, pp.1-9. ⟨10.1016/j.ympev.2014.08.014⟩. ⟨hal-02341729⟩
  • Renaud Boistel, Thierry Aubin, Peter Cloetens, Françoise Peyrin, Thierry Scotti, et al.. How minute sooglossid frogs hear without a middle ear.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2013, 110 (38), pp.15360-4. ⟨10.1073/pnas.1302218110⟩. ⟨hal-00993596⟩
  • Sophie Dhorne-Pollet, Aurore Thélie, Nicolas Pollet. Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development. Developmental Dynamics, Wiley, 2013, 242 (6), pp.709-717. ⟨10.1002/dvdy.23972⟩. ⟨hal-01000790⟩
  • Anne-Gaëlle Planson, Pablo Carbonell, Elodie Paillard, Nicolas Pollet, Jean-Loup Faulon. Compound toxicity screening and structure-activity relationship modeling in Escherichia coli. Biotechnology and Bioengineering, Wiley, 2012, 109 (3), pp.846-850. ⟨10.1002/bit.24356⟩. ⟨hal-02941009⟩
  • Anne-Gaelle Planson, Pablo Carbonell, Elodie Paillard, Nicolas Pollet, Jean-Loup Faulon. Compound toxicity screening and structure-activity relationship modeling in Escherichia coli. Biotechnology and Bioengineering, Wiley, 2012, 109 (3), pp.846-850. ⟨10.1002/bit.24356⟩. ⟨hal-02341732⟩
  • Sébastien Tempel, Nicolas Pollet, Fariza Tahi. ncRNAclassifier: A tool for detection and classification of transposable element sequences in RNA hairpins. BMC Bioinformatics, BioMed Central, 2012, 13 (1), pp.246. ⟨10.1186/1471-2105-13-246⟩. ⟨hal-00745352⟩
  • Karine Parain, Nicolas Mazurier, Odile Bronchain, Caroline Borday, Pauline Cabochette, et al.. A large scale screen for neural stem cell markers in Xenopus retina.. Developmental Neurobiology, Wiley, 2012, 72 (4), pp.491-506. ⟨10.1002/dneu.20973⟩. ⟨hal-00739977⟩
  • Ludivine Sinzelle, Raphaël Thuret, Ho-Yon Hwang, Bérénice Herszberg, Elodie Paillard, et al.. Characterization of a novel Xenopus tropicalis cell line as a model for in vitro studies. Genesis, Wiley-Blackwell, 2012, 50 (3), pp.316-324. ⟨10.1002/dvg.20822⟩. ⟨hal-01189600⟩
  • Caterina Pegoraro, Nicolas Pollet, Anne H Monsoro-Burq. Tissue-specific expression of Sarcoplasmic/Endoplasmic Reticulum Calcium ATPases (ATP2A/SERCA) 1, 2, 3 during Xenopus laevis development.. Gene expression patterns : GEP., 2011, 11 (1-2), pp.122-8. ⟨10.1016/j.gep.2010.10.006⟩. ⟨hal-01183632⟩
  • Marie-Véronique Demattei, Sabah Hedhili, Ludivine Sinzelle, Christophe Bressac, Sophie Casteret, et al.. Nuclear importation of Mariner transposases among eukaryotes: motif requirements and homo-protein interactions.. PLoS ONE, Public Library of Science, 2011, 6 (8), pp.e23693. ⟨10.1371/journal.pone.0023693⟩. ⟨hal-01129541⟩
  • L. Sinzelle, Quentin Carradec, E. Paillard, O. Bronchain, Nicolas Pollet. Characterization of a Xenopus tropicalis Endogenous Retrovirus with Developmental and Stress-Dependent Expression. Journal of Virology, American Society for Microbiology, 2011, 85 (5), pp.2167-2179. ⟨10.1128/JVI.01979-10⟩. ⟨hal-02341751⟩
  • Qods Ymlahi-Ouazzani, Odile Bronchain, Elodie Paillard, Chantal Ballagny, Albert Chesneau, et al.. Reduced levels of survival motor neuron protein leads to aberrant motoneuron growth in a Xenopus model of muscular atrophy.. neurogenetics, Springer Verlag, 2010, 11 (1), pp.27-40. ⟨10.1007/s10048-009-0200-6⟩. ⟨hal-00506551⟩
  • P. Smelty, M. Céline, R. Renard, L. Sinzelle, N. Pollet, et al.. Identification of the pre-T cell receptor alpha-chain in non-mammalian vertebrates challenges the structure-function of the molecule.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2010, 107(46), pp.19991-19996. ⟨hal-00575930⟩
  • Michael J Gilchrist, Mikkel B Christensen, Odile Bronchain, Frédéric Brunet, Albert Chesneau, et al.. Database of queryable gene expression patterns for Xenopus.. Developmental Dynamics, Wiley, 2009, 238 (6), pp.1379-88. ⟨10.1002/dvdy.21940⟩. ⟨hal-00506545⟩
  • Albert Chesneau, Laurent M Sachs, Norin Chai, Yonglong Chen, Louis Du Pasquier, et al.. Transgenesis procedures in Xenopus.. Biology of the Cell, Wiley, 2008, 100 (9), pp.503-21. ⟨10.1042/BC20070148⟩. ⟨hal-00741876⟩
  • Antoine Graindorge, Olivier Le Tonquèze, Raphaël Thuret, Nicolas Pollet, Howard Beverley Osborne, et al.. Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis.. Nucleic Acids Research, Oxford University Press, 2008, 36 (6), pp.1861-70. ⟨10.1093/nar/gkn031⟩. ⟨hal-00277442⟩
  • E.W. Deutsch, C.A. Ball, J.J. Berman, G.S. Bova, A. Brazma, et al.. Minimum information specification for in situ hybridization and immunohistochemistry experiments. Nature Biotechnology, Nature Publishing Group, 2008, 26 (3), pp.305-12. ⟨hal-00303113⟩
  • Agnès Petit, Florence Rouleux-Bonnin, Marie Lambelé, Nicolas Pollet, Yves Bigot. Properties of the various Botmar1 transcripts in imagoes of the bumble bee, Bombus terrestris (Hymenoptera: Apidae).. Gene, Elsevier, 2007, 390 (1-2), pp.52-66. ⟨10.1016/j.gene.2006.07.025⟩. ⟨hal-00283968⟩
  • Sylvie Troncale, Raphaël Thuret, Anna-Carolina Fierro, C. Ben, Nicolas Pollet, et al.. Modelling of TH-dependent regulation of tadpole tail resorption. Journal of Biological Physics and Chemistry, Basel, Switzerland : Collegium Basilea (Institute of Advanced Study) ; Tbilisi : Association of Modern Scientific Investigation (AMSI), 2007, 7 (2), pp.45--50. ⟨hal-00342182⟩
  • D. Du Pasquier, Albert Chesneau, L. M. Sachs, C. Ballagny, Renaud Boistel, et al.. Tbid mediated activation of the mitochondrial death pathway leads to genetic ablation of the lens in Xenopus laevis. Genesis, Wiley-Blackwell, 2007, 45 (1), pp.1-10. ⟨10.1002/dvg.20252⟩. ⟨hal-00320361⟩
  • D. Du Pasquier, A. Chesneau, Q. Ymlahi-Ouazzani, R. Boistel, N. Pollet, et al.. tBid mediated activation of the mitochondrial death pathway leads to genetic ablation of the lens in Xenopus laevis.. Genesis, Wiley-Blackwell, 2007, 45 (1), pp.1-10. ⟨10.1002/dvg.20252⟩. ⟨hal-00179423⟩
  • D. Du Pasquier, A. Chesneau, Q. Ymlahi-Ouazzani, R. Boistel, N. Pollet, et al.. TBid Mediated Activation of the Mitochondrial Death Pathway Leads to Genetic Ablation of the Lens in Xenopus laevis. Genesis, Wiley-Blackwell, 2007, pp.1-10. ⟨hal-00264436⟩
  • Ana C Fierro, Raphaël Thuret, Laurent Coen, Muriel Perron, Barbara A Demeneix, et al.. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis.. BMC Genomics, BioMed Central, 2007, 8, pp.118. ⟨10.1186/1471-2164-8-118⟩. ⟨hal-00159690⟩
  • Odile Bronchain, Nicolas Pollet, Q. Ymlahi-Ouazzani, S. Dhorne-Pollet, J. C. Helbling, et al.. The olig family: phylogenetic analysis and early gene expression in Xenopus tropicalis.. Development Genes and Evolution, Springer Verlag, 2007, 217 (7), pp.485-97. ⟨10.1007/s00427-007-0158-z⟩. ⟨hal-00741861⟩
  • Antoine Graindorge, Raphaël Thuret, Nicolas Pollet, Howard Beverley Osborne, Yann Audic. Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.. Nucleic Acids Research, Oxford University Press, 2006, 34 (3), pp.986-95. ⟨10.1093/nar/gkj492⟩. ⟨hal-00289723⟩
  • N. Pollet, A. Mazabraud. Insights from Xenopus genomes.. Genome Dyn, 2006, 2, pp.138-53. ⟨10.1159/000095101⟩. ⟨hal-00741911⟩
  • L. Sinzelle, J. Vallin, L. Coen, A. Chesneau, D. Du Pasquier, et al.. Generation of trangenic Xenopus laevis using the Sleeping Beauty transposon system.. Transgenic Research, Springer Verlag, 2006, 15 (6), pp.751-60. ⟨10.1007/s11248-006-9014-6⟩. ⟨hal-00284072⟩
  • Ludivine Sinzelle, Albert Chesneau, Yves Bigot, André Mazabraud, Nicolas Pollet. The mariner transposons belonging to the irritans subfamily were maintained in chordate genomes by vertical transmission.. Journal of Molecular Evolution, Springer Verlag, 2006, 62 (1), pp.53-65. ⟨10.1007/s00239-005-0013-7⟩. ⟨hal-00283666⟩
  • Howard Beverley Osborne, Carole Gautier-Courteille, Antoine Graindorge, Carine Barreau, Yann Audic, et al.. Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP.. Biochemical Society Transactions, Portland Press, 2005, 33 (Pt 6), pp.1541-3. ⟨10.1042/BST20051541⟩. ⟨inserm-00292938⟩
  • Nicolas Pollet, Roger Cojean, Réjean Couture, Jean-Luc Schneider, Alexander L. Strom, et al.. A slab-on-slab model for the Flims rockslide (Swiss Alps). Canadian Geotechnical Journal, NRC Research Press, 2005, pp.587-600. ⟨hal-00583913⟩
  • Ludivine Sinzelle, Nicolas Pollet, Yves Bigot, André Mazabraud. Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis.. Gene, Elsevier, 2005, 349, pp.187-96. ⟨10.1016/j.gene.2004.12.023⟩. ⟨hal-00741904⟩
  • Cécile Crosnier, Cathrine Driancourt, Nicolas Raynaud, Sophie Pollet, Nicolas Pollet, et al.. Mutations in JAGGED1 gene are predominantly sporadic in Alagille syndrome.. Gastroenterology, WB Saunders, 1999, 116 (5), pp.1141-1148. ⟨10.1016/s0016-5085(99)70017-x⟩. ⟨hal-02698837⟩
  • Nicolas Pollet, Claire Boccaccio, Sophie Dhorne-Pollet, Catherine Driancourt, Nicole Raynaud, et al.. Construction of an integrated physical and gene map of human chromosome 20p12 providing candidate genes for Alagille syndrome.. Genomics, Elsevier, 1997, 42 (3), pp.489-498. ⟨10.1006/geno.1997.4676⟩. ⟨hal-02693988⟩

Conference papers5 documents

  • Sophie Dhorne-Pollet, Celine Robert, Nicolas Pollet, Eric Barrey. Using direct long RNA sequencing to explore transcriptome and long non-coding RNA in equine muscle. EMBL Advanced Training Centre -The Non-Coding Genome, Oct 2019, Heidelberg, Germany. ⟨hal-02413841⟩
  • Nicolas Pollet. Deciphering the transcriptome of the dodecaploid Xenopus eysoole. 9th Annual meeting of the EFOR network - Xenopus workshop, May 2019, Paris, France. ⟨hal-02413850⟩
  • Sophie Dhorne-Pollet, Céline Robert, Nicolas Pollet, Eric Barrey. Using direct long RNA sequencing to explore transcriptome and long non-coding RNA in equine muscle. EMBL Advanced Training Centre -The Non-Coding Genome, European Molecular Biology Laboratory (EMBL). DEU., Oct 2019, Heidelberg, Germany. ⟨hal-02734745⟩
  • Nicolas Pollet. Characterization of Hermetia illucens genome and metagenome . Insectinov 3, Nov 2019, Romainville, France. ⟨hal-02413858⟩
  • Julie Millery, Claire Fenech, Nicolas Pollet, J Claude Pernollet, Jean Gascuel. Xenopus Laevis and Xenopus Tropicalis have different number of OBP genes : Xlaeobp and Xtroobp. 15. International Symposium on Olfaction and Taste (ISOT), Jul 2008, San Francisco, United States. ⟨hal-02754494⟩

Book sections3 documents

  • Michael Gilchrist, Nicolas Pollet. Databases of Gene Expression in Xenopus Development. Methods in Molecular Biology, pp.319-345, 2012, ⟨10.1007/978-1-61779-992-1_19⟩. ⟨hal-02341747⟩
  • Mazabraud André, Nicolas Pollet. Insights from Xenopus genomes. Volff J.N. Genome Dynamics, Volff J.N., pp.138-153, 2006, vol 2 Vertebrate Genomes. ⟨hal-00284239⟩
  • Nicolas Pollet, André Mazabraud. The Xenopus genomes. Volff J-N. Vertebrate Genomes, Basel, Karger, pp.vol 2, 138-153, 2006, Genome dynamics. ⟨hal-00297212⟩

Preprints, Working Papers, ...2 documents

  • Valérie Ducret, Adam Richards, Mathieu Videlier, Thibault Scalvenzi, Karen Moore, et al.. Transcriptomic analysis of the trade-off between endurance and burst-performance in the frog Xenopus allofraseri. 2021. ⟨hal-03104307⟩
  • Thibault Scalvenzi, Isabelle Clavereau, Nicolas Pollet. Gut microbial ecology of Xenopus tadpoles across life stages. 2021. ⟨hal-03104285⟩

Theses1 document

  • Nicolas Pollet. Large high-speed gravity rock slope movements: Contributions of field observations in order to understand propagation and deposition processes. Application to three alpine cases: La Madeleine (Savoie, France), Flims (Graubunden, Switzerland) and Köfels (Tyrol, Austria). Sciences of the Universe [physics]. Ecole des Ponts ParisTech, 2004. English. ⟨pastel-00000820⟩

Habilitation à diriger des recherches1 document

  • Nicolas Pollet. A propos de la génomique fonctionnelle et du xénope. Biochimie [q-bio.BM]. Université Paris Sud - Paris XI, 2005. ⟨tel-00159672⟩