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Nicolas Parisot

97
Documents
Affiliations actuelles
  • 9121
Identifiants chercheurs

Présentation

### Positions - **2015-now: Assistant Professor at [INSA Lyon](https://www.insa-lyon.fr/) and [BF2I Lab](https://bf2i.insa-lyon.fr/)** - 2014-2015: Fixed term Assistant Professor (French ATER) at [INSA Lyon](https://www.insa-lyon.fr/) and [BF2I Lab](https://bf2i.insa-lyon.fr/). "High-throughput genomics and transcriptomics to study insect symbioses" - 2011-2014: PhD student, Université Blaise Pascal (Clermont-Ferrand II, France), [LMGE](https://lmge.uca.fr) and [CIDAM](https://www6.clermont.inrae.fr/medis/) labs. "Selection of oligonucleotide probes for high-throughput study of complex environments" ### Academic degrees - 2011-2014: PhD thesis in Bioinformatics and Microbial Ecology, Université Blaise Pascal (Clermont-Ferrand II, France) - 2010-2011: Master of Science in Biostatistics and Bioinformatics, Université Claude Bernard (Lyon I, France) - 2008-2011: Master of Engineering degree in Bioinformatics and Modelling, INSA Lyon, France - 2006-2008: Technology degree in Bioinformatics, Université d'Auvergne (Aurillac, France)

Publications

MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation

Jérémy Tournayre , Valérie Polonais , Ivan Wawrzyniak , Reginald Florian Akossi , Nicolas Parisot
International Journal of Molecular Sciences, 2024, 25 (2), pp.880. ⟨10.3390/ijms25020880⟩
Article dans une revue hal-04427987v1
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GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data

Pauline Schmitt , Baptiste Sorin , Timothée Frouté , Nicolas Parisot , Federica Calevro
Genes, 2023, 14 (2), pp.269. ⟨10.3390/genes14020269⟩
Article dans une revue hal-04045297v1
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Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity

Mariana Galvão Ferrarini , Agnès Vallier , Elisa Dell’aglio , Séverine Balmand , Carole Vincent-Monégat
Frontiers in Physiology, 2023, 14, pp.1142513. ⟨10.3389/fphys.2023.1142513⟩
Article dans une revue hal-04045330v1
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Differential responses of Ceratitis capitata to infection by the entomopathogenic fungus Purpureocillium lilacinum

Wafa Djobbi , Meriem Msaad Guerfali , Agnès Vallier , Kamel Charaabi , Hubert Charles
PLoS ONE, 2023, 18 (9), pp.e0286108. ⟨10.1371/journal.pone.0286108⟩
Article dans une revue hal-04227067v1
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Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

Mariana Galvão Ferrarini , Agnès Vallier , Carole Vincent-Monégat , Elisa Dell’aglio , Benjamin Gillet
Microbiome, 2023, 11 (1), pp.274. ⟨10.1186/s40168-023-01714-8⟩
Article dans une revue hal-04345509v1
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Aphid BCR4 Structure and Activity Uncover a New Defensin Peptide Superfamily

Karine Loth , Nicolas Parisot , Françoise Paquet , Hugo Terrasson , Catherine Sivignon
International Journal of Molecular Sciences, 2022, 23 (20), pp.12480. ⟨10.3390/ijms232012480⟩
Article dans une revue hal-03862651v1
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Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat
Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩
Article dans une revue hal-03839252v1
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The Di-Symbiotic Systems in the Aphids Sipha maydis and Periphyllus lyropictus Provide a Contrasting Picture of Recent Co-Obligate Nutritional Endosymbiosis in Aphids

François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Samir Fakhour , Nicolas Parisot
Microorganisms, 2022, 10 (7), pp.1360. ⟨10.3390/microorganisms10071360⟩
Article dans une revue hal-03738802v1

Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum

C. Huygens , Mélanie Ribeiro Lopes , Karen Gaget , G. Duport , S. Peignier
Insect Biochemistry and Molecular Biology, In press, 141, pp.103670. ⟨10.1016/j.ibmb.2021.103670⟩
Article dans une revue hal-03507324v1
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The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand
BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩
Article dans une revue hal-03627264v1
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Evolutionary novelty in the apoptotic pathway of aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Cissy Huygens , Sergio Peignier
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (51), pp.32545-32556. ⟨10.1073/pnas.2013847117⟩
Article dans une revue hal-03052353v1

Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil

Justin Maire , Nicolas Parisot , Mariana Galvao Ferrarini , Agnès Vallier , Benjamin Gillet
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (32), pp.19347-19358. ⟨10.1073/pnas.2007151117⟩
Article dans une revue hal-03028766v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Article dans une revue hal-02917617v1
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Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth

Jessika Consuegra , Théodore Grenier , Patrice Baa-Puyoulet , Isabelle Rahioui , Houssam Akherraz
PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩
Article dans une revue hal-02919023v1
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Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

Jan Philip Oeyen , Patrice Baa-Puyoulet , Joshua Benoit , Leo Beukeboom , Erich Bornberg-Bauer
Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩
Article dans une revue hal-02618254v1
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Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants

Kévin Royet , Nicolas Parisot , Agnès Rodrigue , Erwan Gueguen , Guy Condemine
Molecular Plant Pathology, 2019, 20 (2), pp.287-306. ⟨10.1111/mpp.12754⟩
Article dans une revue hal-01922287v1
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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Kristen Panfilio , Iris Vargas Jentzsch , Joshua Benoit , Deniz Erezyilmaz , Yuichiro Suzuki
Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩
Article dans une revue hal-02139052v1
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Weevil pgrp-lb prevents endosymbiont TCT dissemination and chronic host systemic immune activation

Justin Maire , Carole Vincent-Monégat , Severine Balmand , Agnès Vallier , Mireille Hervé
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (12), pp.5623-5632. ⟨10.1073/pnas.1821806116⟩
Article dans une revue hal-02139047v1
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Bacteriocyte cell death in the pea aphid/ Buchnera symbiotic system

Pierre Simonet , Karen Gaget , Severine Balmand , Mélanie Ribeiro Lopes , Nicolas Parisot
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1819 - E1828. ⟨10.1073/pnas.1720237115⟩
Article dans une revue hal-01768487v1
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Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

Stefano Colella , Nicolas Parisot , Pierre Simonet , Karen Gaget , Gabrielle Duport
Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩
Article dans une revue hal-01905508v1
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Metatranscriptomics reveals the active bacterial and eukaryotic fibrolytic communities in the rumen of dairy cow fed a mixed diet

Sophie Marre , Nicolas Parisot , Pascale Lepercq , Frédérique Durand , Pascale Mosoni
Frontiers in Microbiology, 2017, 8, pp.67-67. ⟨10.3389/fmicb.2017.00067⟩
Article dans une revue hal-01606055v1
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Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

Abdel Belkorchia , Jean-François Pombert , Valérie Polonais , Nicolas Parisot , Frédéric Delbac
DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩
Article dans une revue hal-01594835v1
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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Patrice Baa-Puyoulet , Nicolas Parisot , Gérard Febvay , Jaime Huerta-Cepas , Augusto F Vellozo
Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩
Article dans une revue hal-01352558v1
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Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

Pierre Simonet , Karen Gaget , Nicolas Parisot , Gabrielle Duport , Marjolaine Rey
Scientific Reports, 2016, 6, pp.1-12. ⟨10.1038/srep34321⟩
Article dans une revue hal-01388523v1
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Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model

Céline Ribière , Pierre Peyret , Nicolas Parisot , Claude Darcha , Pierre Déchelotte
Scientific Reports, 2016, 6, pp.1-11. ⟨10.1038/srep31027⟩
Article dans une revue hal-02637913v1
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Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells

Cyril Guilhen , Nicolas Charbonnel , Nicolas Parisot , Nathalie Gueguen , Agnès Iltis
BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2557-x⟩
Article dans une revue hal-01394069v1
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Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes

Corinne Biderre-Petit , Eric Dugat-Bony , Mickaël Mege , Nicolas Parisot , Lorenz Adrian
PLoS ONE, 2016, 11 (1), ⟨10.1371/journal.pone.0145558⟩
Article dans une revue hal-01599389v2
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Weevil endosymbiont dynamics is associated with a clamping of immunity

F. Masson , Y. Moné , A. Vigneron , A. Vallier , N. Parisot
BMC Genomics, 2015, 16 (1), pp.819. ⟨10.1186/s12864-015-2048-5⟩
Article dans une revue hal-01449139v1

Capturing prokaryotic dark matter genomes

C. Gasc , C. Ribière , N. Parisot , R. Beugnot , C. Defois
Research in Microbiology, 2015, 166 (10), pp.814-830. ⟨10.1016/j.resmic.2015.06.001⟩
Article dans une revue hal-01449140v1
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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

Abdel Belkorchia , Cyrielle Gasc , Valérie Polonais , Nicolas Parisot , Nicolas Gallois
PLoS ONE, 2015, 10 (9), pp.1-12. ⟨10.1371/journal.pone.0139075⟩
Article dans une revue hal-01247479v1

Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils

Aurélie Cébron , Thierry Beguiristain , Jeanne Bongoua-Devisme , Jérémie Denonfoux , Pierre Faure
Environmental Science and Pollution Research, 2015, 22 (18), pp.13724-13738. ⟨10.1007/s11356-015-4117-3⟩
Article dans une revue hal-01248748v1
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Guillaume Borrel , Nicolas Parisot , Hugh Harris , Eric Peyretaillade , Nadia Gaci
BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩
Article dans une revue pasteur-01059404v1
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Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.

Nicolas Parisot , Adrian Pelin , Cyrielle Gasc , Valérie Polonais , Abdel Belkorchia
Genome Biology and Evolution, 2014, 6 (9), pp.2289-300. ⟨10.1093/gbe/evu178⟩
Article dans une revue hal-01071789v1

Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France

G. Girault , N. Parisot , E. Peyretaillade , P. Peyret , Sylviane Derzelle
Genome Announcements, 2014, 2 (4), pp.25081258. ⟨10.1128/genomeA.00736-14⟩
Article dans une revue hal-01110149v1

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems

E Peyretaillade , D Boucher , N Parisot , C Gasc , R Butler
Heredity, 2014, pp.25182222. ⟨10.1038/hdy.2014.78⟩
Article dans une revue hal-01110134v1
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Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database

Faouzi Jaziri , Eric Peyretaillade , Mohieddine Missaoui , Nicolas Parisot , Sébastien Cipière
The Scientific World Journal, 2014, 2014, pp.350487. ⟨10.1155/2014/350487⟩
Article dans une revue hal-01110169v2
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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

Johan Panek , Hicham El Alaoui , Anne Mone , Serge Urbach , Edith Demettre
PLoS ONE, 2014, 9 (6), pp.e100791. ⟨10.1371/journal.pone.0100791⟩
Article dans une revue hal-01053924v1
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Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples

Claudia Bragalini , Céline Ribière , Nicolas Parisot , Laurent Vallon , Elsa Prudent
DNA Research, 2014, 21 (6), pp.685-694. ⟨10.1093/dnares/dsu030⟩
Article dans une revue hal-02487472v1
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PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification

Faouzi Jaziri , Nicolas Parisot , Anis Abid , Jérémie Denonfoux , C. Ribière
Database - The journal of Biological Databases and Curation, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩
Article dans une revue hal-01612766v1
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Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces

Guillaume Borrel , Hugh Harris , Nicolas Parisot , Nadia Gaci , William Tottey
Genome Announcements, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩
Article dans une revue pasteur-02445822v1
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Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

Jérémie Denonfoux , Nicolas Parisot , Eric Dugat-Bony , Corinne Petit , Delphine Boucher
DNA Research, 2013, 20 (2), pp. 1-12. ⟨10.1093/dnares/dst001⟩
Article dans une revue hal-00783545v1
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The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey , Jeremie Denonfoux , Faouzi Jaziri , Nicolas Parisot , Mohiedine Missaoui
PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩
Article dans une revue hal-01612757v1
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Detecting unknown sequences with DNA microarrays: explorative probe design strategies.

Eric Dugat-Bony , Eric Peyretaillade , Nicolas Parisot , Corinne Biderre-Petit , Faouzi Jaziri
Environmental Microbiology, 2012, 14 (2), pp.356-71. ⟨10.1111/j.1462-2920.2011.02559.x⟩
Article dans une revue hal-00822134v1
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Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

Guillaume Borrel , Hugh Mb Harris , William Tottey , A. Mihajlovski , Nicolas Parisot
Journal of Bacteriology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩
Article dans une revue hal-01612754v1

Annotation of microsporidian genomes using transcriptional signals.

Eric Peyretaillade , Nicolas Parisot , Valérie Polonais , Sébastien Terrat , Jérémie Denonfoux
Nature Communications, 2012, 3, pp.1137. ⟨10.1038/ncomms2156⟩
Article dans une revue hal-00813939v1

KASpOD a web service for highly specific and explorative oligonucleotide design

Nicolas Parisot , Jérémie Denonfoux , Eric Dugat-Bony , Pierre Peyret , Eric Peyretaillade
Bioinformatics, 2012, 28 (23), pp.3161-3162. ⟨10.1093/bioinformatics/bts597⟩
Article dans une revue hal-02651992v1

Extreme reduction and compaction of microsporidian genomes.

Eric Peyretaillade , Hicham El Alaoui , Marie Diogon , Valérie Polonais , Nicolas Parisot
Research in Microbiology, 2011, 162 (6), pp.598-606. ⟨10.1016/j.resmic.2011.03.004⟩
Article dans une revue hal-00814808v1

Isolation of Insect as a Platform for Transcriptomic Analyses

Mélanie Ribeiro Lopes , Pierre Simonet , Gabrielle Duport , Karen Gaget , Severine Balmand
RNA abundance analysis, 2170, pp.185-198, 2021, ⟨10.1007/978-1-0716-0743-5_13⟩
Chapitre d'ouvrage hal-03052268v1

Genetic Diversity of the Apoptotic Pathway in Insects

Mélanie Ribeiro Lopes , Nicolas Parisot , Patrick Callaerts , Federica Calevro
Evolution, Origin of Life, Concepts ans Methods, Springer International Publishing, pp.253-285, 2019, 978-3-030-30363-1. ⟨10.1007/978-3-030-30363-1_13⟩
Chapitre d'ouvrage hal-02304321v1

Probe design strategies for oligonucleotide microarrays

Nicolas Parisot , Eric Peyretaillade , Eric Dugat-Bony , Jérémie Denonfoux , Antoine Mahul
Microarray Technology, 1368, Editions Springer, 2016, Methods in Molecular Biology, 978-1-4939-3135-4. ⟨10.1007/978-1-4939-3136-1_6⟩
Chapitre d'ouvrage hal-01273700v1

Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning

Céline Ribière , Réjane Beugnot , Nicolas Parisot , Cyrielle Gasc , Clémence Defois
Microbial Environmental Genomics (MEG), 1399, Springer New York, pp.167-182, 2016, Methods in Molecular Biology, ⟨10.1007/978-1-4939-3369-3_10⟩
Chapitre d'ouvrage hal-03772783v1

Software tools for the selection of oligonucleotide probes for microarrays.

Nicolas Parisot , Denonfoux Jérémie , Eric Dugat-Bony , Eric Peyretaillade , Pierre Peyret
Microarrays: Current technology, Innovations and Applications, Caister Academic Press, 2014
Chapitre d'ouvrage hal-03772798v1

Peptides « Bacteriocyte-specific Cysteine Rich » (BCR) : un rôle dans le contrôle de la symbiose ? Focus sur BCR4 chez le puceron du pois

Hugo Terrasson , Karine Loth , Nicolas Parisot , Isabelle Rahioui , Karen Gaget
12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Communication dans un congrès hal-03741305v1

Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Jousselin Emmanuelle , Patrice Baa-Puyoulet , C. Huygens , Karen Gaget
Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy
Communication dans un congrès hal-03514196v1

Analysis of the Inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , Marie-Gabrielle Duport
Webinaires BAPOA 2021, 2021, Villeurbanne (virtual), France
Communication dans un congrès hal-03514209v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional characterization in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens
8. international symposium on Molecular Insect Science, Jul 2019, Sitges, Spain
Communication dans un congrès hal-03741297v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional diversification in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Abdelaziz Heddi
UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Rothamsted, United Kingdom
Communication dans un congrès hal-03512999v1

Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels

Federica Calevro , Nicolas Parisot , Mélanie Ribeiro Lopes , Stefano Colella , Karen Gaget
11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Communication dans un congrès hal-03514026v1

Another way to die for bacteriocytes in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Kurt Buhler
Journée des doctorants du département SPE, Jun 2018, Nice, France
Communication dans un congrès hal-03510629v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Communication dans un congrès hal-03514051v1

Amplification des gènes codant les protéines de la famille des IAP et leur rôle dans l'homéostasie bactériocytaire

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens
11. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Communication dans un congrès hal-03741308v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport
International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France
Communication dans un congrès hal-03514034v1

Expansion of genes encoding Apoptosis Inhibitor Proteins (IAPs) and their role in a novel bacteriocyte cell death process in aphid symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Pierre Simonet , Severine Balmand
22. Evolutionary Biology Meeting, Sep 2018, Marseille, France
Communication dans un congrès hal-03509938v1

A novel cell death process is involved in the elimination of bacteriocytes and their symbionts through aphid aging

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Communication dans un congrès hal-03514078v1

The long-term relationship with Buchnera aphidicola imposes another way to die for Acyrthosiphon pisum bacteriocytes

Pierre Simonet , Severine Balmand , Karen Gaget , Karine Buhler , Nicolas Parisot
9. Réunion annuelle du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2016, Amiens, France
Communication dans un congrès hal-03506794v1

Une nouvelle forme de mort cellulaire impliquée dans la dégénérescence des cellules bactériocytaires chez le puceron du pois, Acyrthosiphon pisum

Pierre Simonet , Severine Balmand , Karen Gaget , Marie-Gabrielle Duport , Nicolas Parisot
18. Colloque Biologie de l'Insecte, Jun 2016, Tours, France
Communication dans un congrès hal-03506790v1

Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet

Nicolas Parisot , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet
9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France
Communication dans un congrès hal-03506796v1

Propositional Logic for Efficient Microbial Community Assessment by DNA Microarray Data Analysis

F. Jaziri , C. Ribiere , C. Gasc , N. Parisot , C. Defois
JOBIM, 2015, Clermont-Fd, France. pp.1-9
Communication dans un congrès hal-02077182v1
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From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways

Patrice Baa-Puyoulet , Mathieu Labernardiere , Nicolas Parisot , Jean-Pierre Gauthier , Gérard Febvay
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p
Communication dans un congrès hal-01208786v1

Fungal secondary metabolites from Monascus spp. reduce methane production by affecting rumen methanogenic Archaea diversity in wethers

Milka Popova , Nicolas Parisot , Céline Ribière , Jérémie Denonfoux , Eric Dugat-Bony
Greenhouse Gases and Animal Agriculture Conference, 2013, Dublin, Ireland
Communication dans un congrès hal-02746467v1

MetaExploArrays: a large-scale oligonucleotide probe design software for explorative DNA microarrays

Faouzi Jaziri , David R.C. Hill , Nicolas Parisot , Jeremie Denonfoux , Eric Dugat-Bony
13. International Conference on Parallel and Distributed Computing, Applications and Technologies, Dec 2012, Bejing, China. ⟨10.1109/PDCAT.2012.94⟩
Communication dans un congrès hal-01393662v1

MetaExploArrays : a large-scale oligonucleotide probe design software for explorative DNA microarrays

F. Jaziri , David R.C. Hill , N. Parisot , J. Denonfoux , E. Dugat-Bony
IEEE PDCAT 2012, 2012, Pekin, China. pp.664-671
Communication dans un congrès hal-02077374v1
Image document

Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul

Faouzi Jaziri , Sébastien Cipière , Mohieddine Missaoui , Denonfoux Jérémie , Eric Dugat-Bony
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Communication dans un congrès hal-00658712v1

Genomic analysis of the transport function in the symbiotic system of the pea aphid Acyrthosiphon pisum

Yvan Rahbé , Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel
5. Meeting GDRE-RA "Comparative genomics", Institut d'Estudis Catalans (IEC). Barcelona, ESP., Nov 2010, Barcelone, Spain. n. p
Communication dans un congrès hal-02823073v1

Annotation et évolution des familles de transporteurs chez le puceron du pois (Acyrthosiphon pisum)

Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel , Federica Calevro
3. Réunion Réseau Français de Biologie Adaptative des Pucerons, Institut National de Recherche Agronomique (INRA). UMR Biologie Fonctionnelle, Insectes et Interactions (0203)., Oct 2010, Lyon, France. n. p
Communication dans un congrès hal-02818835v1

ER stress as a major regulator of aphid bacteriocyte cell death

Karen Gaget , Mélanie Ribeiro Lopes , Marie-Gabrielle Duport , Patrick Callaerts , Nicolas Parisot
12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Poster de conférence hal-03741344v1

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts.

Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles
12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Poster de conférence hal-03810352v1

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae andSodalis pierantonius endosymbiotic association

Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier
ISS 2022 - 10th Congress of the International Symbiosis Society, Jul 2022, Lyon, France
Poster de conférence hal-03810657v1

Bacteriocyte-specific Cystein-Rich (BCR) peptides, a new aphid’s defensin-like family, are promising regulators of aphid symbiosis

Hugo Terrasson , Karine Loth , Nicolas Parisot , Isabelle Rahioui , Karen Gaget
10. Congress of the International Society of Symbiosis, Jul 2022, Lyon, France
Poster de conférence hal-03741331v1

Bacteriocytes and the interorgan communication network regulating physiology and metabolism of the pea aphid

Cissy Huygens , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Sergio Peignier
10. Congress of the International Society of Symbiosis, Jul 2022, Lyon, France
Poster de conférence hal-03741324v1

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts

Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles
13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France
Poster de conférence hal-03514174v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet
UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Harpenden, United Kingdom
Poster de conférence hal-03741333v1

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport
UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Rothamsted, United Kingdom
Poster de conférence hal-03513048v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot
UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Rothamsted, United Kingdom
Poster de conférence hal-03513018v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Patrick Callaerts , Federica Calevro
11. European Congress of Entomology, Jul 2018, Naples, Italy
Poster de conférence hal-03741337v1

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport
XIth European Congress of Entomology, Jul 2018, Naples, Italy
Poster de conférence hal-03509885v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot
International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France
Poster de conférence hal-03514067v1

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand
VI Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma de Mallorca, Spain
Poster de conférence hal-03514015v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Patrick Callaerts , Federica Calevro
International Partner Days, Oct 2018, Lyon, France
Poster de conférence hal-03741347v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot
11. European Congress of Entomology, Jul 2018, Naples, Italy
Poster de conférence hal-03509913v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Patrick Callaerts , Federica Calevro
International Partner Days, Oct 2018, Lyon, France
Poster de conférence hal-03741354v1

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France
Poster de conférence hal-03506786v1

Analyse génomique de la fonction de transport dans le système symbiotique du puceron du pois Acyrthosiphon pisum

Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel , Federica Calevro
16. Colloque de Biologie de l’Insecte, Oct 2010, Lyon, France. , 126 p., 2010, CBI-2010 : 16ème Colloque de Biologie de l’Insecte, Lyon, 18 au 20 octobre 2010
Poster de conférence hal-02755294v1