Nicolas Francillonne

Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩

Christophe Plomion, Jean-Marc Aury, Joëlle Amselem, Tina Alaeitabar, Valérie Barbe, et al.. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.. Molecular Ecology Resources, Wiley/Blackwell, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩. ⟨hal-01579667⟩

Joëlle Amselem, Nicolas Francillonne, Célia Michotey, Thomas Letellier, Jean-Marc Aury, et al.. An integrated information system dedicated to oak genomics and genetics. PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides. ⟨hal-01839185⟩

Jerome J. Salse, Jean Marc Aury, Florent Murat, Sébastien Faye, Karine Labadie, et al.. Oak genome sequencing and evolution. Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p. ⟨hal-02741698⟩

Joelle J. Amselem, Jean Marc Aury, Nicolas Francillonne, Tina Alaeitabar, Corinne da Silva, et al.. Annotation of the oak genome sequence and associated bioinformatic resources. IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p. ⟨hal-02741128⟩

Nicolas Francillonne, Catherine Bodenes-Brezard Bodénès, François Ehrenmann, Célia Michotey, Antoine Kremer, et al.. Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequence. Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. 134 p., 2016, Book of abstracts. ⟨hal-02741266⟩

Nicolas Francillonne, Tina Alaeitabar, Françoise Alfama-Depauw, Loïc Couderc, Claire Guerche, et al.. A computational architecture designed for genome annotation: oak genome sequencing project as a use case. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015. ⟨hal-01246649⟩

Tina Alaeitabar, Nicolas Francillonne, Mikaël Loaec, Hadi Quesneville, Joelle J. Amselem. Benchmarks for transcript assembly and differential gene expression (new isoforms) analysis in the context of transposable elements. Assemblée Générale France Génomique 2015, Nov 2015, Paris, France. 2015. ⟨hal-01243323⟩

Agnès Baud, Mariène Wan, Danielle Nouaud, Nicolas Francillonne, Dominique Anxolabéhère, et al.. Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks. 2020. ⟨hal-02956027⟩