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32

CV


Journal articles14 documents

  • Mikael Trellet, Nicolas Ferey, Jakub Flotyński, Marc Baaden, Patrick Bourdot. Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data. Journal of Integrative Bioinformatics, Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.), 2018, 15 (2), ⟨10.1515/jib-2018-0004⟩. ⟨hal-01935586⟩
  • Marc Baaden, Olivier Delalande, Nicolas Ferey, Samuela Pasquali, Jérôme Waldispühl, et al.. Ten simple rules to create a serious game, illustrated with examples from structural biology. PLoS Computational Biology, Public Library of Science, 2018, 14 (3), pp.e1005955. ⟨10.1371/journal.pcbi.1005955⟩. ⟨hal-01744190⟩
  • Olivier Delalande, Anne-Elisabeth Molza, Raphael dos Santos Morais, Angélique Chéron, Emeline Pollet, et al.. Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2018, 293 (18), pp.6637-6646. ⟨10.1074/jbc.M117.809798⟩. ⟨hal-01795395⟩
  • Xavier Martinez, Nicolas Férey, Jean-Marc Vézien, Patrick Bourdot. 3D reconstruction with a markerless tracking method of flexible and modular molecular physical models: towards tangible interfaces. Journal of Virtual Reality and Broadcasting, Digital Peer Publishing NRW, 2017, pp.1-12. ⟨hal-02351533⟩
  • Matthieu Dreher, Jessica Prevoteau-Jonquet, Mikael Trellet, Marc Piuzzi, Marc Baaden, et al.. ExaViz: a Flexible Framework to Analyse, Steer and Interact with Molecular Dynamics Simulations. Faraday Discussions of the Chemical Society, Royal Society of Chemistry, 2014, Molecular simulations and visualization, 169, pp.119-142. ⟨10.1039/C3FD00142C⟩. ⟨hal-00942627⟩
  • Anne-Elisabeth Molza, Nicolas Férey, Mirjam Czjzek, Elisabeth Le Rumeur, Jean-François Hubert, et al.. Innovative interactive flexible docking method for multi-scale reconstruction elucidates dystrophin molecular assembly. Faraday Discussions, Royal Society of Chemistry, 2014, 169, pp.45-62. ⟨10.1039/C3FD00134B⟩. ⟨hal-01018071⟩
  • Weiya Chen, Céline Clavel, Nicolas Férey, Patrick Bourdot. Perceptual Conflicts in a Multi-Stereoscopic Immersive Virtual Environment: Case Study on Face-to-Face Interaction through an Avatar. Presence: Teleoperators and Virtual Environments, Massachusetts Institute of Technology Press (MIT Press), 2014, 23, pp.410-429. ⟨hal-01845441⟩
  • A. Tek, M. Baaden, N. Férey, P. Bourdot. MANHaptic: A Haptic Adaptive Method for Precise Manipulation, Assembly \and Navigation. International Journal on Human Machine Interaction, 2013, 1, pp.60--67. ⟨hal-01498081⟩
  • Matthieu Dreher, Marc Piuzzi, Ahmed Turki, Matthieu Chavent, Marc Baaden, et al.. Interactive Molecular Dynamics: Scaling up to Large Systems. Procedia Computer Science, Elsevier, 2013, 2013 International Conference on Computational Science, 18, pp.20-29. ⟨10.1016/j.procs.2013.05.165⟩. ⟨hal-01084652⟩
  • Adrien Saladin, Christopher Amourda, Pierre Poulain, Nicolas Férey, Marc Baaden, et al.. Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.. Nucleic Acids Research, Oxford University Press, 2010, 38 (19), pp.6313-23. ⟨10.1093/nar/gkq459⟩. ⟨hal-00533099⟩
  • Olivier Delalande, Nicolas Ferey, Benoist Laurent, Marc Gueroult, Brigitte Hartmann, et al.. Multi-resolution approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device.. Pacific Symposium on Biocomputing, World Scientific, 2010, pp.205-15. ⟨hal-00661430⟩
  • Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden. Complex molecular assemblies at hand via interactive simulations.. Journal of Computational Chemistry, Wiley, 2009, 30 (15), pp.2375-87. ⟨10.1002/jcc.21235⟩. ⟨inserm-00713313⟩
  • Nicolas Férey, Julien Nelson, Christine Martin, Lorenzo Picinali, Guillaume Bouyer, et al.. Multisensory VR interaction for protein-docking in the CoRSAIRe project. Virtual Reality, Springer Verlag, 2009, 13 (4), pp.273-293. ⟨10.1007/s10055-009-0136-z⟩. ⟨hal-01753897⟩
  • Nicolas Férey, Guillaume Bouyer, Christine Martin, Abdelhamid Drif, Patrick Bourdot, et al.. Docking de protéines en réalité virtuelle. Une approche hybride et multimodale. Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, Lavoisier, 2009, 28 (8), pp.983 - 1015. ⟨10.3166/tsi.28.983-1015⟩. ⟨hal-01753902⟩

Conference papers16 documents

  • Eugenie Brasier, Olivier Chapuis, Nicolas Ferey, Jeanne Vezien, Caroline Appert. ARPads: Mid-air Indirect Input for Augmented Reality. Proceedings of the International Symposium on Mixed and Augmented Reality, Nov 2020, Porto de Galinhas, Brazil. 13 p. ⟨hal-02915795⟩
  • Mengchen Wang, Nicolas Ferey, Patrick Bourdot, Frédéric Magoulès. Using Asynchronous Simulation Approach for Interactive Simulation. 2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.84-87, ⟨10.1109/DCABES48411.2019.00028⟩. ⟨hal-02399881⟩
  • Mengchen Wang, Nicolas Ferey, Patrick Bourdot, Frédéric Magoulès. Interactive 3D Fluid Simulation: Steering the Simulation in Progress Using Lattice Boltzmann Method. 2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.72-75, ⟨10.1109/DCABES48411.2019.00025⟩. ⟨hal-02399846⟩
  • M. Trellet, N. Ferey, M. Baaden, P. Bourdot. Interactive Visual Analytics of Molecular Data in Immersive Environments via a Semantic Definition of the Content and the Context. IEEE VR 2016/VR 2016 Workshop on Immersive Analytics, 2016, Unknown, Unknown Region. ⟨hal-01497990⟩
  • Alexandre Kouyoumdjian, Nicolas Ferey, Patrick Bourdot, Stéphane Huot. Characterizing the Influence of Motion Parameters on Performance when Acquiring Moving Targets. 15th Human-Computer Interaction (INTERACT), Sep 2015, Bamberg, Germany. pp.148-155, ⟨10.1007/978-3-319-22723-8_12⟩. ⟨hal-01207511⟩
  • M. Trellet, N. Ferey, M. Baaden, P. Bourdot. Content and task based navigation for structural biology in 3D environments. Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), 2015 IEEE 1st International Workshop on, 2015, Unknown, Unknown Region. pp.31--36. ⟨hal-01498020⟩
  • Cédric Fleury, Nicolas Ferey, Jean-Marc Vézien, Patrick Bourdot. Remote Collaboration across Heterogeneous Large Interactive Spaces. IEEE VR International Workshop on 3D Collaborative Virtual Environments (3DCVE 2015), Mar 2015, Arles, France. ⟨10.1109/3DCVE.2015.7153591⟩. ⟨hal-01242306⟩
  • M. Trellet, Nicolas Férey, M. Baaden, P. Bourdot. Content-guided Navigation in Multimeric Molecular Complexes. BIOIMAGING 2014 - Proceedings of the International Conference on Bioimaging, ESEO, Angers, Loire Valley, France, 3-6 March, 2014, 2014, Unknown, Unknown Region. pp.76--81, ⟨10.5220/0004914300760081⟩. ⟨hal-01498053⟩
  • M. Trellet, N. Férey, M. Baaden, P. Bourdot. Navigation guidée par le contenu pour l'exploration moléculaire.. Actes de l'AFRV, 2013, Unknown, Unknown Region. ⟨hal-01498083⟩
  • Malik Qasim, Guillaume Bouyer, Nicolas Férey. Using Conceptual Graphs to embed expert knowledge in VR Interactions: Application to Structural Biology. 5th Joint Virtual Reality Conference – JVRC 2013, Dec 2013, Campus Paris Saclay, France. ⟨hal-01753890⟩
  • Matthieu Dreher, Marc Piuzzi, Turki Ahmed, Chavent Matthieu, Marc Baaden, et al.. Interactive Molecular Dynamics: Scaling up to Large Systems. International Conference on Computational Science, ICCS 2013, Jun 2013, Barcelone, Spain. ⟨hal-00809024⟩
  • Nicolas Ferey, Olivier Delalande, Marc Baaden. BioSpring: an interactive and multi-resolution software for exible docking and for mechanical exploration of large biomolecular assemblies. JOBIM 2012 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.433-434. ⟨hal-00761683⟩
  • Pierre Martin, Nicolas Férey, Céline Clavel, Françoise Darses, Patrick Bourdot. Sensorimotor feedback for interactive realism: evaluation of a haptic driving paradigm for a forklift simulator. International Conference EuroHaptics, Poika Isokoski; Jukka Springare, Jan 2012, Tampere, Finland. ⟨hal-01845450⟩
  • Nicolas Ferey, Guillaume Bouyer, Christine Martin, Patrick Bourdot, Julien Nelson, et al.. User Needs Analysis to Design a 3D Multimodal Protein-Docking Interface. IEEE Symposium on 3D User Interfaces 2008, Mar 2008, Reno, United States. ⟨10.1109/3DUI.2008.4476602⟩. ⟨hal-01197539⟩
  • Nicolas Férey, Nioche Claire Toffano, Taillez Oriane Matte, Rachid Gherbi, W. Turner. REVIVOS: REalité VIrtuelle pour la construction de VOcabulaires Spécialisés. 18es Journées Francophones d'Ingénierie des Connaissances, Jul 2007, Grenoble, France. not specified. ⟨hal-00509922⟩
  • Nicolas Férey, Pierre-Emmanuel Gros, Joan Hérisson, Rachid Gherbi. Visual Data Mining of Genomic Databases by Immersive Graph-Based Exploration. GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, 2005, Dunedin, New Zealand. pp.4. ⟨hal-00145610⟩

Book sections1 document

  • Alex Tek, Benoist Laurent, Marc Piuzzi, Zhihan Lu, Matthieu Chavent, et al.. Advances in Human-Protein Interaction - Interactive and Immersive Molecular Simulations. Weibo Cai and Hao Hong. Biochemistry, Genetics and Molecular Biology " "Protein-Protein Interactions - Computational and Experimental Tools", InTech, pp.27-65, 2012, 978-953-51-0397-4. ⟨10.5772/36568⟩. ⟨hal-00760181⟩

Other publications1 document

  • Marc Baaden, Matthieu Dreher, Nicolas Ferey, Sébastien Limet, Jessica Prevoteau-Jonquet, et al.. Vitamins : Visual and In Situ Analytics for Molecular Interactive Simulation. 2014. ⟨hal-01313096⟩