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CV Nicolas Barnich


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  • Mélissa Chervy, Nicolas Barnich, Jérémy Denizot. Adherent-Invasive E. coli: Update on the Lifestyle of a Troublemaker in Crohn's Disease. International Journal of Molecular Sciences, MDPI, 2020, 21 (10), pp.3734. ⟨10.3390/ijms21103734⟩. ⟨hal-02917127⟩
  • Carla Camprubí-Font, Paula Bustamante, Roberto Vidal, Claire O'Brien, Nicolas Barnich, et al.. Study of a classification algorithm for AIEC identification in geographically distinct E. coli strains. Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.8094. ⟨10.1038/s41598-020-64894-5⟩. ⟨inserm-02865390⟩
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  • Manon Defaye, Céline Nourrisson, Elodie Baudu, Amandine Lashermes, Maeva Meynier, et al.. Fecal dysbiosis associated with colonic hypersensitivity and behavioral alterations in chronically Blastocystis-infected rats. Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.9146. ⟨10.1038/s41598-020-66156-w⟩. ⟨inserm-02884871⟩
  • Elodie Gimier, Mélissa Chervy, Allison Agus, Adeline Sivignon, Elisabeth Billard, et al.. Methyl-donor supplementation prevents intestinal colonization by Adherent-invasive E. coli in a mouse model of crohn's disease. Scientific Reports, Nature Publishing Group, 2020, 10, pp.12922. ⟨10.1038/s41598-020-69472-3⟩. ⟨hal-02917129⟩
  • Sho Kitamoto, Christopher Alteri, Michael Rodrigues, Hiroko Nagao-Kitamoto, Kohei Sugihara, et al.. Dietary l-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut. Nature Microbiology, Nature Publishing Group, 2020, 5 (1), pp.116-125. ⟨10.1038/s41564-019-0591-6⟩. ⟨hal-02541666⟩
  • Mathilde Gay‐bellile, Maud Privat, Alexandra Martins, Sandrine Caputo, Céline Pebrel‐richard, et al.. Is BRCA2 involved in early onset colorectal cancer risk?. Clinical Genetics, Wiley, 2020, 97 (4), pp.668-669. ⟨10.1111/cge.13679⟩. ⟨hal-02518337⟩
  • C Douadi, E Vazeille, Christophe Chambon, M Hébraud, M Dodel, et al.. DOP49 Quantitative proteomics analysis of macrophages from Crohn’s disease patients and infected with adherent-invasive Escherichia coli. Journal of Crohn's and Colitis, Elsevier - Oxford University Press, 2020, 14 (Supplement_1), pp.S087-S088. ⟨10.1093/ecco-jcc/jjz203.088⟩. ⟨hal-02539567⟩
  • Mickael Desvaux, Guillaume Dalmasso, Racha Beyrouthy, Nicolas Barnich, Julien Delmas, et al.. Pathogenicity Factors of Genomic Islands in Intestinal and Extraintestinal Escherichia coli. Front. Microbiol., 2020, 11, ⟨10.3389/fmicb.2020.02065⟩. ⟨hal-02948743⟩
  • Anaïs Larabi, Laurène Salesse, Charlotte Cordonnier, Lucie Etienne-Mesmin, Nicolas Barnich, et al.. Differential miRNA-Gene Expression in M Cells in Response to Crohn’s Disease-Associated AIEC. Microorganisms, MDPI, 2020, 8 (8), pp.1205. ⟨10.3390/microorganisms8081205⟩. ⟨hal-02935826⟩
  • Anaïs Larabi, Nicolas Barnich, Hang Thi Thu Nguyen. New insights into the interplay between autophagy, gut microbiota and inflammatory responses in IBD. Autophagy, Taylor & Francis, 2020, 16 (1), pp.38-51. ⟨10.1080/15548627.2019.1635384⟩. ⟨hal-03001079⟩
  • Hyungjun Yang, Hengameh Mirsepasi-Lauridsen, Carsten Struve, Joannie Allaire, Adeline Sivignon, et al.. Ulcerative Colitis-associated E. coli pathobionts potentiate colitis in susceptible hosts. Gut microbes, Taylor & Francis, 2020, pp.1 - 19. ⟨10.1080/19490976.2020.1847976⟩. ⟨hal-03033772⟩
  • Anaïs Larabi, Nicolas Barnich, Hang Thi Thu Nguyen. Emerging Role of Exosomes in Diagnosis and Treatment of Infectious and Inflammatory Bowel Diseases. Cells, MDPI, 2020, 9 (5), pp.1111. ⟨10.3390/cells9051111⟩. ⟨hal-03001072⟩
  • Cecily Lucas, Laurène Salesse, My Hanh Thi Hoang, Mathilde Bonnet, Pierre Sauvanet, et al.. Autophagy of Intestinal Epithelial Cells Inhibits Colorectal Carcinogenesis Induced by Colibactin-Producing Escherichia coli in Apc Mice. Gastroenterology, WB Saunders, 2020, 158 (5), pp.1373-1388. ⟨10.1053/j.gastro.2019.12.026⟩. ⟨hal-02518438⟩
  • Anaïs Larabi, Guillaume Dalmasso, Julien Delmas, Nicolas Barnich, Hang Thi Thu Nguyen. Exosomes transfer miRNAs from cell-to-cell to inhibit autophagy during infection with Crohn’s disease-associated adherent-invasive E. coli. Gut microbes, Taylor & Francis, 2020, 11 (6), pp.1677-1694. ⟨10.1080/19490976.2020.1771985⟩. ⟨hal-03001063⟩
  • Amélie Lopès, Elisabeth Billard, Al Hassan Casse, Romain Villeger, Julie Veziant, et al.. Colibactin‐positive Escherichia coli induce a procarcinogenic immune environment leading to immunotherapy resistance in colorectal cancer. International Journal of Cancer, Wiley, 2020, 146 (11), pp.3147-3159. ⟨10.1002/ijc.32920⟩. ⟨hal-02913026⟩
  • Jérémy Denizot, Nicolas Barnich. When adherent-invasive E. coli plays with host glycosylation: Does it open new perspectives for therapeutic strategies in Crohn's disease?. EBioMedicine, Elsevier, 2020, 55, pp.1-2. ⟨10.1016/j.ebiom.2020.102752⟩. ⟨hal-02912994⟩
  • Julie Veziant, Karine Poirot, Caroline Chevarin, Lucie Cassagnes, Pierre Sauvanet, et al.. Prognostic value of a combination of innovative factors (gut microbiota, sarcopenia, obesity, metabolic syndrome) to predict surgical/oncologic outcomes following surgery for sporadic colorectal cancer: a prospective cohort study protocol (METABIOTE). BMJ Open, BMJ Publishing Group, 2020, 10 (1), pp.e031472. ⟨10.1136/bmjopen-2019-031472⟩. ⟨hal-02518339⟩
  • Julie Veziant, Karine Poirot, Caroline Chevarin, Lucie Cassagnes, Pierre Sauvanet, et al.. Prognostic value of a combination of innovative factors (gut microbiota, sarcopenia, obesity, metabolic syndrome) to predict surgical/oncologic outcomes following surgery for sporadic colorectal cancer: a prospective cohort study protocol (METABIOTE). BMJ Open, BMJ Publishing Group, 2020, 10 (1), pp.e031472. ⟨10.1136/bmjopen-2019-031472⟩. ⟨hal-03037509⟩
  • Nassim Hammoudi, Dominique Cazals-Hatem, Claire Auzolle, Charlotte Gardair, Marjolaine Ngollo, et al.. Association Between Microscopic Lesions at Ileal Resection Margin and Recurrence After Surgery in Patients With Crohn’s Disease. Clinical Gastroenterology and Hepatology, WB Saunders, 2019, ⟨10.1016/j.cgh.2019.04.045⟩. ⟨hal-02193633⟩
  • Harry Sokol, Loic Brot, Carmen Stefanescu, Claire Auzolle, Nicolas Barnich, et al.. Prominence of ileal mucosa-associated microbiota to predict postoperative endoscopic recurrence in Crohn’s disease. Gut, BMJ Publishing Group, 2019, pp.gutjnl-2019-318719. ⟨10.1136/gutjnl-2019-318719⟩. ⟨hal-02193634⟩
  • Romain Villeger, Amélie Lopès, Guillaume Carrier, Julie Veziant, Elisabeth Billard, et al.. Intestinal Microbiota: A Novel Target to Improve Anti-Tumor Treatment?. International Journal of Molecular Sciences, MDPI, 2019, 20 (18), pp.4584. ⟨10.3390/ijms20184584⟩. ⟨hal-02518541⟩
  • Julien Delmas, Lucie Gibold, Tiphanie Faïs, Sylvine Batista, Martin Leremboure, et al.. Metabolic adaptation of adherent-invasive Escherichia coli to exposure to bile salts. Scientific Reports, Nature Publishing Group, 2019, ⟨10.1038/s41598-019-38628-1⟩. ⟨hal-02060120⟩
  • Matthieu Allez, Claire Auzolle, Marjolaine Ngollo, Hugo Bottois, Victor Chardiny, et al.. T cell clonal expansions in ileal Crohn’s disease are associated with smoking behaviour and postoperative recurrence. Gut, BMJ Publishing Group, 2019, 9 (1), pp.gutjnl-2018-317878. ⟨10.1136/gutjnl-2018-317878⟩. ⟨hal-02193601⟩
  • Jin Imai, Sho Kitamoto, Kohei Sugihara, Hiroko Kitamoto, Atsushi Hayashi, et al.. Flagellin-mediated activation of IL-33-ST2 signaling by a pathobiont promotes intestinal fibrosis. Mucosal Immunology, Nature Pub. Group, 2019, 12 (3), pp.632-643. ⟨10.1038/s41385-019-0138-4⟩. ⟨hal-02193572⟩
  • Guillaume Dalmasso, Hang Nguyen, Tiphanie Faïs, Sébastien Massier, Nicolas Barnich, et al.. Crohn’s Disease-Associated Adherent-Invasive Escherichia coli Manipulate Host Autophagy by Impairing SUMOylation. Cells, MDPI, 2019, 8 (1), pp.35. ⟨10.3390/cells8010035⟩. ⟨hal-02060087⟩
  • Anaïs Larabi, Nicolas Barnich, Hang Thi Thu Nguyen. New insights into the interplay between autophagy, gut microbiota and inflammatory responses in IBD. Autophagy, Taylor & Francis, 2019, pp.1-14. ⟨10.1080/15548627.2019.1635384⟩. ⟨hal-02193636⟩
  • Hyungjun Yang, Hengameh Chloé Mirsepasi-Lauridsen, Carsten Struve, Joannie Allaire, Adeline Sivignon, et al.. Ulcerative Colitis-associated E. coli pathobionts potentiate colitis in susceptible hosts. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2019, 202 (1 Suppl), pp.192.3. ⟨hal-03003143⟩
  • C. Groussard, F. Maillard, E. Vazeille, Nicolas Barnich, P. Sirvent, et al.. Tissue-Specific Oxidative Stress Modulation by Exercise: A Comparison between MICT and HIIT in an Obese Rat Model. Oxidative Medicine and Cellular Longevity, Hindawi, 2019, 2019, 11 p. ⟨10.1155/2019/1965364⟩. ⟨hal-02266297⟩
  • Florie Maillard, Emilie Vazeille, Pierre Sauvanet, Pascal Sirvent, Richard Bonnet, et al.. Preventive Effect of Spontaneous Physical Activity on the Gut-Adipose Tissue in a Mouse Model That Mimics Crohn’s Disease Susceptibility. Cells, MDPI, 2019, 8 (1), pp.33. ⟨10.3390/cells8010033⟩. ⟨hal-01982430⟩
  • Gwladys Sevrin, Sébastien Massier, Benoit Chassaing, Allison Agus, Julien Delmas, et al.. Adaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization ability. Gut microbes, Taylor & Francis, 2018, pp.1 - 17. ⟨10.1080/19490976.2017.1421886⟩. ⟨hal-01730371⟩
  • S. Denis, T Tsilia, N. Ballet, P. Vandekerckove, T. van de Wiele, et al.. Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407. Applied Microbiology and Biotechnology, Springer Verlag, 2018, 102 (14), pp.6175-6189. ⟨10.1007/s00253-018-9053-y⟩. ⟨hal-01809200⟩
  • Romain Villeger, Amélie Lopès, Julie Veziant, Johan Gagniere, Nicolas Barnich, et al.. Microbial markers in colorectal cancer detection and/or prognosis. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2018, 24 (22), pp.2327 - 2347. ⟨10.3748/wjg.v24.i22.2327⟩. ⟨hal-01897664⟩
  • A. Lopès, Al H. Cassé, E. Billard, E. Boulcourt-Sambou, G. Roche, et al.. Deciphering the immune microenvironment of a tissue by digital imaging and cognition network. Scientific Reports, Nature Publishing Group, 2018, 8, pp.16692. ⟨10.1038/s41598-018-34731-x⟩. ⟨hal-01926377⟩
  • Tiphanie Faïs, Julien Delmas, Nicolas Barnich, Richard Bonnet, Guillaume Dalmasso. Colibactin: More Than a New Bacterial Toxin. Toxins, MDPI, 2018, 10 (4), ⟨10.3390/toxins10040151⟩. ⟨hal-01796959⟩
  • Tetiana Dumych, Nao Yamakawa, Adeline Sivignon, Estelle Garénaux, Stefania Robakiewicz, et al.. Oligomannose-Rich Membranes of Dying Intestinal Epithelial Cells Promote Host Colonization by Adherent-Invasive E. coli. Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.00742⟩. ⟨hal-01796957⟩
  • Guillaume Le Baut, Claire O'Brien, Paul Pavli, Maryline Roy, Philippe Seksik, et al.. Prevalence of Yersinia Species in the Ileum of Crohn's Disease Patients and Controls. Frontiers in Cellular and Infection Microbiology, Frontiers, 2018, 8, ⟨10.3389/fcimb.2018.00336⟩. ⟨hal-01897651⟩
  • Alexis Bretin, Cecily Lucas, Anaïs Larabi, Guillaume Dalmasso, Elisabeth Billard, et al.. AIEC infection triggers modification of gut microbiota composition in genetically predisposed mice, contributing to intestinal inflammation. Scientific Reports, Nature Publishing Group, 2018, 8 (1), ⟨10.1038/s41598-018-30055-y⟩. ⟨hal-01897658⟩
  • Manon Defaye, Céline Nourrisson, Elodie Baudu, Ivan Warwzyniak, Virginie Bonnin, et al.. Efficient and reproducible experimental infections of rats with Blastocystis spp.. PLoS ONE, Public Library of Science, 2018, 13 (11), pp.1-15. ⟨10.1371/journal.pone.0207669⟩. ⟨hal-01931278⟩
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  • Cecily Lucas, Nicolas Barnich, Hang Thi Thu Nguyen. Microbiota, inflammation and colorectal cancer. International Journal of Molecular Sciences, MDPI, 2017, 18 (6), ⟨10.3390/ijms18061310⟩. ⟨hal-01608007⟩
  • Dimitri Alvarez dorta, Thibaut Chalopin, Adeline Sivignon, Jérôme De ruyck, Tetiana I. Dumych, et al.. Physiochemical Tuning of Potent Escherichia coli Anti-Adhesives by Microencapsulation and Methylene Homologation. ChemMedChem, Wiley-VCH Verlag, 2017, 12 (12), pp.986 - 998. ⟨10.1002/cmdc.201700061⟩. ⟨hal-01639771⟩
  • Adeline Sivignon, Julie Bouckaert, Julien Bernard, Sebastien G. Gouin, Nicolas Barnich. The potential of FimH as a novel therapeutic target for the treatment of Crohn’s disease. Expert Opinion on Therapeutic Targets, Taylor & Francis, 2017, 21 (9), pp.837 - 847. ⟨10.1080/14728222.2017.1363184⟩. ⟨hal-01633566⟩
  • Allison Agus, Jérémy Denizot, Jonathan Thevenot, Margarita Martinez-Medina, Sébastien Massier, et al.. Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.19032. ⟨10.1038/srep19032⟩. ⟨hal-01928173⟩
  • Jennifer Raisch, Guillaume Dalmasso, Richard Bonnet, Nicolas Barnich, Mathilde Bonnet, et al.. How some bacteria of the commensal flora would exacerbate colorectal carcinogenesis?. médecine/sciences, EDP Sciences, 2016, 32 (2), pp.175 - 182. ⟨10.1051/medsci/20163202011⟩. ⟨hal-01397583⟩
  • Jennifer Raisch, Guillaume Dalmasso, Richard Bonnet, Nicolas Barnich, Mathilde Bonnet, et al.. Certaines bactéries de la flore commensale exacerberaient-elles la carcinogenèse colorectale ?. médecine/sciences, EDP Sciences, 2016, 32 (2), pp.175-82. ⟨10.1051/medsci/20163202011⟩. ⟨pasteur-01351541⟩
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  • Anthony Buisson, E. Vazeille, R. Minet-Quinard, M. Goutte, D. Bouvier, et al.. Faecal chitinase 3-like 1 is a reliable marker as accurate as faecal calprotectin in detecting endoscopic activity in adult patients with inflammatory bowel diseases. Alimentary Pharmacology and Therapeutics, Wiley, 2016, 43 (10), pp.1069-1079. ⟨10.1111/apt.13585⟩. ⟨hal-02639968⟩
  • Céline Ribière, Pierre Peyret, Nicolas Parisot, Claude Darcha, Pierre Déchelotte, et al.. Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model. Scientific Reports, Nature Publishing Group, 2016, 6, pp.1-11. ⟨10.1038/srep31027⟩. ⟨hal-02637913⟩
  • Anthony Buisson, Marie-Agnès Bringer, Nicolas Barnich, Emilie Vazeille. Macrophages Versus Escherichia coli: A Decisive Fight in Crohn's Disease. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2016, 22 (12), pp.2943 - 2955. ⟨10.1097/MIB.0000000000000946⟩. ⟨hal-01493355⟩
  • Johan Gagnière, Jennifer Raisch, Julie Veziant, Nicolas Barnich, Richard Bonnet, et al.. Gut microbiota imbalance and colorectal cancer.. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2016, 22 (2), pp.501-18. ⟨10.3748/wjg.v22.i2.501⟩. ⟨pasteur-01351170⟩
  • Johan Gagnière, Jennifer Raisch, Julie Veziant, Nicolas Barnich, Richard Bonnet, et al.. Gut microbiota imbalance and colorectal cancer. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2016, 22 (2), ⟨10.3748/wjg.v22.i2.501⟩. ⟨hal-01396927⟩
  • Sabine Szunerits, Oleksandr Zagorodko, Virginie Cogez, Tetiana Dumych, Thibaut Chalopin, et al.. Differentiation of Crohn’s Disease-Associated Isolates from Other Pathogenic Escherichia coli by Fimbrial Adhesion under Shear Force. Biology, MDPI 2016, 5 (2), ⟨10.3390/biology5020014⟩. ⟨hal-01741244⟩
  • Lucie Gibold, Estelle Garénaux, Guillaume Dalmasso, Camille Gallucci, David Cia, et al.. The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associated Escherichia coli. Cellular Microbiology, Wiley, 2016, 18 (5), pp.617 - 631. ⟨10.1111/cmi.12539⟩. ⟨hal-01926372⟩
  • Alexis Bretin, Jessica Carrière, Guillaume Dalmasso, Agnes Bergougnoux, Wafa B'Chir, et al.. Activation of the EIF2AK4-EIF2A/eIF2 alpha-ATF4 pathway triggers autophagy response to crohn disease-associated adherent-invasive escherichia coli infection. Autophagy, Taylor & Francis, 2016, 12 (5), pp.770-783. ⟨10.1080/15548627.2016.1156823⟩. ⟨hal-02640052⟩
  • Jessica Carrière, Alexis Bretin, Arlette Darfeuille-Michaud, Nicolas Barnich, - Hang Thi Thu Nguyen. Exosomes released from cells infected with crohn's disease-associated adherent-invasive escherichia coli activate host innate immune responses and enhance bacterial intracellular replication. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2016, 22 (3), pp.516-528. ⟨10.1097/MIB.0000000000000635⟩. ⟨hal-02638024⟩
  • T. Chalopin, D. Alvarez Dorta, Adeline Sivignon, M. Caudan, T. Dumych, et al.. Second generation of thiazolylmannosides, FimH antagonists for E. coli-induced Crohn's disease. Organic and Biomolecular Chemistry, Royal Society of Chemistry, 2016, 14 (16), pp.3913-3925. ⟨10.1039/c6ob00424e⟩. ⟨hal-02077029⟩
  • Dimitri Alvarez dorta, Adeline Sivignon, Thibaut Chalopin, Tetiana Dumych, Goedele Roos, et al.. The Antiadhesive Strategy in Crohn′s Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut. ChemBioChem, Wiley-VCH Verlag, 2016, 17 (10), pp.936-952. ⟨10.1002/cbic.201600018⟩. ⟨hal-02077036⟩
  • Xibo Yan, Adeline Sivignon, Nicolas Barnich, Sébastien G Gouin, Julie Bouckaert, et al.. A library of heptyl mannose-functionalized copolymers with distinct compositions, microstructures and neighboring non-sugar motifs as potent antiadhesives of type 1 piliated E. coli. Polymer Chemistry, Royal Society of Chemistry - RSC, 2016, 7 (15), pp.2674-2683. ⟨10.1039/c6py00118a⟩. ⟨hal-01396465⟩
  • Emilie Vazeille, Anthony Buisson, Marie-Agnès Bringer, Marion Goutte, Lemlih Ouchchane, et al.. Monocyte-derived macrophages from Crohn’s disease patients are impaired in the ability to control intracellular adherent-invasive Escherichia coli and exhibit disordered cytokine secretion profile. Journal of Crohn's and Colitis, Elsevier - Oxford University Press, 2015, 9 (5), pp.410-420. ⟨10.1093/ecco-jcc/jjv053⟩. ⟨hal-01594239⟩
  • Nicolas Dreux, Maria del Mar Cendra, Sébastien Massier, Arlette Darfeuille Michaud, Nicolas Barnich, et al.. Erratum to : "Ribonucleotide reductase repressor NrdR as a novel regulator for motility and chemotaxis during adherent-invasive ascherichia coli Infection (vol 83, pg 1305, 2015)". Infection and Immunity, American Society for Microbiology, 2015, 83 (10), pp.4174-4174. ⟨10.1128/IAI.00728-15⟩. ⟨hal-02630205⟩
  • Nicolas Dreux, Maria del Mar Cendra, Sébastien Massier, Arlette Darfeuille Michaud, Nicolas Barnich, et al.. Ribonucleotide reductase NrdR as a novel regulator for motility and chemotaxis duringadherent-invasive escherichia coli infection. Infection and Immunity, American Society for Microbiology, 2015, 83 (4), pp.1305-1317. ⟨10.1128/IAI.02772-14⟩. ⟨hal-02640038⟩
  • Adeline Sivignon, Amélie de Vallée, Nicolas Barnich, Jérémy Denizot, Claude Darcha, et al.. Saccharomyces cerevisiae CNCM I-3856 Prevents Colitis Induced by AIEC Bacteria in the Transgenic Mouse Model Mimicking Crohnʼs Disease. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2015, 21 (2), pp.276 - 286. ⟨10.1097/MIB.0000000000000280⟩. ⟨hal-01928174⟩
  • Marta Aleandri, Maria Pia Conte, Giovanna Simonetti, Simona Panella, Ignacio Celestino, et al.. Influenza A virus infection of intestinal epithelial cells enhances the adhesion ability of Crohn's disease associated Escherichia coli strains. PLoS ONE, Public Library of Science, 2015, 10 (2), ⟨10.1371/journal.pone.0117005⟩. ⟨hal-02639201⟩
  • Benoit Chassaing, Estelle Garénaux, Jessica Carrière, Nathalie Rolhion, Yann Guerardel, et al.. Analysis of the sigma(E) Regulon in Crohn's Disease-Associated Escherichia coli Revealed Involvement of the waaWVL Operon in Biofilm Formation. Journal of Bacteriology, American Society for Microbiology, 2015, 197 (8), pp.1451-1465. ⟨10.1128/JB.02499-14⟩. ⟨hal-02631034⟩
  • Jérémy Denizot, Alexis Desrichard, Allison Agus, Nancy Uhrhammer, Nicolas Dreux, et al.. Diet-induced hypoxia responsive element demethylation increases CEACAM6 expression, favouring Crohn's disease-associated Escherichia coli colonisation. Gut, BMJ Publishing Group, 2015, 64 (3), pp.428 - 437. ⟨10.1136/gutjnl-2014-306944⟩. ⟨hal-01928389⟩
  • Xibo Yan, Adeline Sivignon, Pierre Alcouffe, Béatrice Burdin, Sabine Favre-Bonte, et al.. Brilliant glyconanocapsules for trapping of bacteria. Chemical Communications, Royal Society of Chemistry, 2015, 51 (67), pp.13193-13196. ⟨10.1039/c5cc04653j⟩. ⟨hal-01221578⟩
  • Xibo Yan, Adeline Sivignon, Nao Yamakawa, Agnès Crepet, Christophe Travelet, et al.. Glycopolymers as Antiadhesives of E. coil Strains Inducing Inflammatory Bowel Diseases. Biomacromolecules, American Chemical Society, 2015, 16 (6), pp.1827-1836. ⟨10.1021/acs.biomac.5b00413⟩. ⟨hal-01174249⟩
  • T. Chalopin, Y. Brissonnet, Adeline Sivignon, D. Deniaud, L. Cremet, et al.. Inhibition profiles of mono- and polyvalent FimH antagonists against 10 different Escherichia coli strains. Organic and Biomolecular Chemistry, Royal Society of Chemistry, 2015, 13 (46), pp.11369 - 11375. ⟨10.1039/c5ob01581b⟩. ⟨hal-01931394⟩
  • Adeline Sivignon, Xibo Yan, Dimitri Alvarez Dorta, Richard Bonnet, Julie Bouckaert, et al.. Development of Heptylmannoside-Based Glycoconjugate Antiadhesive Compounds against Adherent-Invasive Escherichia coli Bacteria Associated with Crohn's Disease. mBio, American Society for Microbiology, 2015, 6 (6), pp.e01298-15. ⟨10.1128/mBio.01298-15⟩. ⟨hal-01265411⟩
  • Michel H. Maillard, Hristina Bega, Holm H. Uhlig, Nicolas Barnich, Teddy Grandjean, et al.. Toll-interacting protein modulates colitis susceptibility in mice. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2014, 20 (4), pp.660-670. ⟨10.1097/MIB.0000000000000006⟩. ⟨hal-02635358⟩
  • Allison Agus, Sébastien Massier, Arlette Darfeuille-Michaud, Elisabeth Billard, Nicolas Barnich. Understanding Host-Adherent-Invasive Escherichia coli Interaction in Crohn’s Disease: Opening Up New Therapeutic Strategies. BioMed Research International , Hindawi Publishing Corporation, 2014, 2014, pp.1 - 16. ⟨10.1155/2014/567929⟩. ⟨hal-01931428⟩
  • Jennifer Raisch, Adeline Sivignon, Benoit Chassaing, Pierre Lapaquette, Sylvie Miquel, et al.. In Memoriam, Arlette Darfeuille-Michaud, PhD. Gut, BMJ Publishing Group, 2014, 63 (11), pp.1681-1682. ⟨10.1136/gutjnl-2014-308182⟩. ⟨hal-01951066⟩
  • Jennifer Raisch, Adeline Sivignon, Benoit Chassaing, Pierre Lapaquette, Sylvie Miquel, et al.. In Memoriam, Arlette Darfeuille-Michaud, PhD. Gastroenterology, WB Saunders, 2014, 147 (5), pp.943-944. ⟨10.1136/gutjnl-2014-308182⟩. ⟨hal-01951060⟩
  • N. Barnich, Jérémy Denizot, A. Darfeuille-Michaud. E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients. Pathologie Biologie, Elsevier Masson, 2013, 61 (5), pp.e65 - e69. ⟨10.1016/j.patbio.2010.01.004⟩. ⟨hal-01928194⟩
  • Claire L O'Brien, Marie-Agnès Bringer, Kathryn E Holt, David M Gordon, Anaëlle L Dubois, et al.. Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli. Gut, BMJ Publishing Group, 2013, 66 (8), pp.1382-1389. ⟨10.1136/gutjnl-2015-311059⟩. ⟨hal-01393979⟩
  • Nicolas Dreux, Jérémy Denizot, Margarita Martinez-Medina, Alexander Mellmann, Maria Billig, et al.. Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response. PLoS Pathogens, Public Library of Science, 2013, 9 (1), pp.e1003141. ⟨10.1371/journal.ppat.1003141⟩. ⟨hal-01928191⟩
  • Margarita Martinez-Medina, Jérémy Denizot, Nicolas Dreux, Frédéric Robin, Elisabeth Billard, et al.. Western diet induces dysbiosis with increased E coli in CEABAC10 mice , alters host barrier function favouring AIEC colonisation. Gut, BMJ Publishing Group, 2013, 63 (1), pp.116 - 124. ⟨10.1136/gutjnl-2012-304119⟩. ⟨hal-01928324⟩
  • Daren Low, Hoa T. Tran, In-Ah Lee, Nicolas Dreux, Alan Kamba, et al.. Chitin-binding domains of Escherichia coli ChiA mediate interactions with intestinal epithelial cells in mice with colitis. Gastroenterology, WB Saunders, 2013, 145 (3), pp.602-612. ⟨10.1053/j.gastro.2013.05.017⟩. ⟨hal-02651692⟩
  • Jérémy Denizot, Nicolas Dreux, Arlette Darfeuille-Michaud, Nicolas Barnich. Importance of Bacteria as Trigger in Inflammatory Bowel Disease. Journal of Gastrointestinal & Digestive System, OMICS International, 2012, 01, pp.S8. ⟨10.4172/2161-069x.s8-003⟩. ⟨hal-01928200⟩
  • Frederic A. Carvalho, Omry Koren, Julia K. Goodrich, Malin E. V. Johansson, Ilke Nalbantoglu, et al.. Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice. Cell Host and Microbe, Elsevier, 2012, 12 (2), pp.139 - 152. ⟨10.1016/j.chom.2012.07.004⟩. ⟨hal-02652647⟩
  • Jérémy Denizot, Adeline Sivignon, Frederick Barreau, Claude Darcha, Carlos H.F. Chan, et al.. Adherent-Invasive Escherichia coli Induce Claudin-2 Expression and Barrier Defect in CEABAC10 Mice and Crohnʼs Disease Patients. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2012, 18 (2), pp.294 - 304. ⟨10.1002/ibd.21787⟩. ⟨hal-01928192⟩
  • Margarita Martinez-Medina, Jesús García-Gil, Nicolas Barnich, Lothar H. Wieler, Christa Ewers. Adherent-invasive Escherichia coli phenotype displayed by intestinal pathogenic E. coli strains from cats, dogs, and swine. Applied and Environmental Microbiology, American Society for Microbiology, 2011, 77 (16), pp.5813 - 5817. ⟨10.1128/AEM.02614-10⟩. ⟨hal-02653076⟩
  • Nathalie Rolhion, Nicolas Barnich, Marie-Agnès Bringer, Anne-Lise Glasser, Julien Ranc, et al.. Abnormally expressed ER stress response chaperone Gp96 in CD favours adherent-invasive Escherichia coli invasion. Growth Development and Aging, Growth Publishing Comp Inc, 2010, 59 (10), pp.1355-1362. ⟨10.1136/gut.2010.207456⟩. ⟨hal-01218270⟩
  • Frédéric Carvalho, Nicolas Barnich, Adeline Sivignon, Claude Darcha, Carlos Chan, et al.. Crohn's disease adherent-invasive Escherichia coli colonize and induce strong gut inflammation in transgenic mice expressing human CEACAM. Journal of Experimental Medicine, Rockefeller University Press, 2009, 206 (10), pp.2179 - 2189. ⟨10.1084/jem.20090741⟩. ⟨hal-01931313⟩
  • Christel Rousseaux, Xavier Thuru, Agathe Gelot, Nicolas Barnich, Christel Neut, et al.. Lactobacillus acidophilus modulates intestinal pain and induces opioid and cannabinoid receptors. Nature Medicine, Nature Publishing Group, 2007, 13 (1), pp.35-37. ⟨10.1038/nm1521⟩. ⟨hal-02667010⟩
  • Nicolas Barnich, Arlette Darfeuille-Michaud. Role of bacteria in the etiopathogenesis of inflammatory bowel disease. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2007, 13 (42), pp.5571-5576. ⟨hal-02669138⟩
  • Nicolas Barnich, Frederic A. Carvalho, Anne-Lise Glasser, Claude Darcha, Peter Jantscheff, et al.. CEACAM6 acts as a receptor for adherent-invasive E. coli, supporting ileal mucosa colonization in Crohn disease. Journal of Clinical Investigation, American Society for Clinical Investigation, 2007, 117 (6), pp.1566-1574. ⟨10.1172/JCI30504⟩. ⟨hal-02666899⟩
  • Nicolas Barnich, Arlette Darfeuille-Michaud. Adherent-invasive Escherichia coli and Crohn's disease. Current Opinion in Gastroenterology, Lippincott, Williams & Wilkins, 2007, 23 (1), pp.16-20. ⟨hal-02666277⟩
  • C. Rousseaux, Xavier Thuru, A. Gelot, N. Barnich, C. Neut, et al.. Induction of mu opioid and cannabinoid receptors by probiotics: A new mechanism of regulation of visceral pain perception. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2007, 13, pp.652-653. ⟨10.1097/00054725-200705005-00035⟩. ⟨hal-02873656⟩
  • C. Rousseaux, Xavier Thuru, A. Gelot, N. Barnich, C. Neut, et al.. Induction of mu opioid and cannabinoid receptors by probiotics. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2007, 13 (supplement), pp.652-653. ⟨10.1097/00054725-200705001-00035⟩. ⟨hal-02873654⟩
  • Nathalie Rolhion, Nicolas Barnich, Laurent Claret, Arlette Darfeuille-Michaud. Strong decrease in invasive ability and outer membrane vesicle release in Crohn's disease-associated adherent-invasive Escherichia coli strain LF82 with the yfgL gene deleted. Journal of Bacteriology, American Society for Microbiology, 2005, 187 (7), pp.2286-2296. ⟨10.1128/JB.187.7.2286-2296.2005⟩. ⟨hal-02681129⟩
  • Marie-Agnès Bringer, Nicolas Barnich, Anne-Lise Glasser, Olivier Bardot, Arlette Darfeuille-Michaud. HtrA Stress Protein Is Involved in Intramacrophagic Replication of Adherent and Invasive Escherichia coli Strain LF82 Isolated from a Patient with Crohn's Disease. Infection and Immunity, American Society for Microbiology, 2005, 73 (2), pp.712 - 721. ⟨10.1128/IAI.73.2.712-721.2005⟩. ⟨hal-01917182⟩
  • Nicolas Barnich, Marie-Agnès Bringer, Laurent Claret, Arlette Darfeuille-Michaud. Involvement of lipoprotein NlpI in the virulence of adherent invasive Escherichia coli strain LF82 isolated from a patient with Crohn's disease. Infection and Immunity, American Society for Microbiology, 2004, 72 (5), pp.2484-2493. ⟨10.1128/IAI.72.5.2484-2493.2004⟩. ⟨hal-02678710⟩
  • Arlette Darfeuille-Michaud, Jerome Boudeau, Philippe Bulois, Christel Neut, Anne-Lise Glasser, et al.. High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease. Gastroenterology, WB Saunders, 2004, 127 (2), pp.412-421. ⟨10.1053/j.gastro.2004.04.061⟩. ⟨hal-02683150⟩
  • Arlette Darfeuille-Michaud, Christel Neut, Nicolas Barnich, Emmanuel Lederman, Patrick Di Martino, et al.. Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease. Gastroenterology, WB Saunders, 1998, 115 (6), pp.1405-1413. ⟨10.1016/S0016-5085(98)70019-8⟩. ⟨hal-01951145⟩

Communication dans un congrès26 documents

  • Guillaume Dalmasso, Tiphanie Faïs, Anthony Cougnoux, Nicolas Barnich, Julien Delmas, et al.. Epithelial to mesenchymal transition in response to E. coli-induced senescence-associated secretory phenotype induced chemotherapeutic drug resistance. DDW 2020, May 2020, Chicago, United States. ⟨hal-02524390⟩
  • Maeva Meynier, Elodie Baudu, Manon Defaye, Y Wawzyniak, Frederic Delbac, et al.. The IL-22 pathway as target to relieve visceral pain and animal well-being. ICTRHN, Jun 2020, Clermont-Ferrand, France. ⟨hal-02524613⟩
  • Cecily Lucas, Laurène Salesse, My Hanh Thi Hoang, Mathilde Bonnet, Pierre Sauvanet, et al.. Autophagy inhibits colorectal carcinogenesis induced by colibactin-producing escherichia coli. Digestive Disease Week (DDW), May 2020, Chicago, United States. ⟨hal-02527278⟩
  • Guillaume Dalmasso, Anthony Cougnoux, Tiphanie Faïs, Hang T.T. Nguyen, Nicolas Barnich, et al.. Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem cell-like phenotype of host cells. DDW2020, May 2020, Chicago, United States. ⟨hal-02524369⟩
  • Nicolas Barnich, Gwladys Sevrin, Lucie Gibold, Richard Bonnet, Julien Delmas. Adaptation of the adherent-invasive E. coli pathobiont to gut environment in the context of intestinal inflammation. 15eme congres national de la SFM, Sep 2019, Paris, France. ⟨hal-02338659⟩
  • Guillaume Dalmasso, Antony Cougnoux, Tiphanie Faïs, Nicolas Barnich, Julien Delmas, et al.. Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem cell-like phenotype of host cells. 15eme congrès national de la SFM, Sep 2019, Paris, France. ⟨hal-02338700⟩
  • Karine Poirot, Julie Veziant, Caroline Chevarin, Lucie Cassagnes, Pierre Sauvanet, et al.. Etude de la valeur pronostique de facteurs innovants (microbiote intestinal, sarcopénie, obésité, syndrome métabolique) sur les résultats chirurgicaux du cancer colorectal. 4ème assises régionales de nutrition et santé, Sep 2019, LYON, France. ⟨hal-02393056⟩
  • Nicolas Barnich. Adaptation of the pathobionte adherent-invasive E. coli to gut environment in the context of Crohn’s disease. Global Summit on Microbiology and Virology, Mar 2019, Prague, Czech Republic. ⟨hal-02524407⟩
  • Nicolas Barnich. Impact du microbiote en Médecine. Journées de la Société Française de Neurologie Pédiatrique, May 2019, Clermont-Ferrand, France. ⟨hal-02526081⟩
  • Guillaume Dalmasso, Tiphanie Faïs, A Cougnoux, Nicolas Barnich, Julien Delmas, et al.. Epithelial to mesenchymal transition in response to E. coli-induced senescence-associated secretory phenotype induced chemotherapeutic drug resistance. 15eme Congrès national de la SFM, Sep 2019, Paris, France. ⟨hal-02524334⟩
  • Romain Villéger, Amélie Lopès, Guillaume Carrier, Gwenaëlle Roche, Johan Gagniere, et al.. Microbiota & Cancer: Between detection and prognosis. 7th World Congress on Targeting Microbiota, Oct 2019, Cracovie, Poland. ⟨hal-02524746⟩
  • Romain Villéger, Gwenaelle Roche, Johan Gagniere, Julien Delmas, Denis Pezet, et al.. Effet des souches d’E. coli pathogènes sur les défense antioxydantes des entérocytes et impact sur la carcinogenèse colique: approche microscopique. Journée des Microscopistes Clermontois, Oct 2019, Clermont Ferrand, France. ⟨hal-02524692⟩
  • Nicolas Barnich, Gwladys Sevrin, Lucie Gibold, Richard Bonnet, Julien Delmas. Adaptation of the adherent-invasive E. coli pathobiont ton gut environment in the context of intestinal inflammation. 15e congrès national de la SFM, Sep 2019, PARIS, France. ⟨hal-02196749⟩
  • Guillaume Dalmasso, Anthony Cougnoux, Tiphanie Faïs, Nicolas Barnich, Julien Delmas, et al.. Colorectal cancer associated-E. coli induce the emergence of chemotherapy-resistant stem clell-like phenotype of host cells. 15e congrès national de la SFM, Sep 2019, PARIS, France. ⟨hal-02196753⟩
  • Elisabeth Billard, Pierre Boccon, Mathilde Pugeat, Allison Agus, Margarita Martinez-Medina, et al.. Impact du régime alimentaire occidental sur l'activation des cellules T dans les ganglions mésentériques chez la souris. 4èmes Assises Régionales de Nutrition et Santé, Sep 2019, LYON, France. ⟨hal-02196877⟩
  • Sandrine Brugiroux, Thomas Sauvaitre, Gwenaelle Roche, Célia Ledieu, Caroline Chevarin, et al.. IMPACTS OF ADDITIVE FOOD E171 (TITANIUM DIOXIDE) ON THE GUT MICROBIOTA AND COLORECTAL CARCINOGENESIS IN APCMIN/+ MURINE MODEL. Digestive Disease Week 2019, May 2019, San Diego, United States. ⟨hal-02307701⟩
  • Nicolas Barnich. Adaptation of the pathobionte adherent-invasive E. coli to gut environnment in the context of Crohn's disease. Global Summit on Microbiology and Virology, Mar 2019, PRAGUE, Czech Republic. ⟨hal-02148374⟩
  • A. Buisson, M. Fumery, X. Hébuterne, B. Pariente, S. Nancey, et al.. Comparison between faecal chitinase 3-like 1, matrix metalloprotease 9, and calprotectin to assess mucosal healing in Crohn's disease: a multicentre prospective study. Congress of ECCO - European Crohn's and Colitis Organisation, 2018, Oxford, United Kingdom. ⟨hal-02734069⟩
  • Alain Buisson, Emilie Vazeille, R. M. Quinard, Marion Goutte, D. Bouvier, et al.. Faecal metalloprotease 9 is a reliable biomarker compared with faecal calprotectin in detecting endoscopic activity in patients with inflammatory bowel diseases. 11. Congress of ECCO - European Crohn's and Colitis Organisation, 2016. ⟨hal-02739827⟩
  • Dimitri Alvarez Dorta, Thibaut Chalopin, Adeline Sivignon, Jerome de Ruyck, Tetiana I. Dumych, et al.. Physiochemical tuning of potent escherichia coli anti-adhesives by microencapsulation and methylene homologation. 52. International Conference on Medicinal Chemistry (RICT) of the French-Medicinal-Chemistry-Society (SCT) - Interfacing Chemical Biology and Drug Discovery, Jul 2016, Caen, France. pp.13, ⟨10.1002/cmdc.201700061⟩. ⟨hal-01607981⟩
  • Allison Agus, Jérémy Denizot, Jonathan Thevenot, Sébastien Massier, Sylvain Denis, et al.. Impact of western diet on short-chain fatty acids production and host susceptibility to intestinal inflammation in a context of Crohn's disease. 10. Congress of the European Crohn's and Colitis Organisation (ECCO) Inflamatory Bowel Diseases, European Crohn´s and Colitis Organisation (ECCO). INT., Feb 2015, Barcelona, Spain. ⟨hal-02740401⟩
  • Sébastien Massier, Sylvie Miquel, Nicolas Dreux, Allison Agus, S. Bouhours, et al.. Involvement of type VI secretion systems in virulence of adherent-invasive Escherichia coli isolated from patients with Crohn's disease. 10. Congress of ECCO. Inflammatory Bowel Diseases, ECCO European Crohn's and Colitis Organization., Feb 2015, Barcelona, Spain. ⟨hal-02739694⟩
  • Emilie Vazeille, Benoit Chassaing, Anthony Buisson, Anaëlle Dubois, Amélie de Vallée, et al.. Mo1770 Gipa factor supports Crohn's disease-associated Escherichia Coli growth in Peyer's patches by providing resistance to bactericidal stress encountered in macrophages. Digestive Disease Week (DDW), May 2015, Philadelphia, United States. ⟨10.1016/S0016-5085(15)32400-8⟩. ⟨hal-01247407⟩
  • Jessica Carrière, Alexis Bretin, Nicolas Barnich, Hang Thi Thu Nguyen. Crohn's disease-associated adherent-invasive Escherichia coli induce secretion of exosomes with pro-inflammatory activity by intestinal epithelial cells. 10. Congress of the European Crohn's and Colitis Organisation (ECCO) Inflamatory Bowel Diseases, European Crohn´s and Colitis Organisation (ECCO). INT., Feb 2015, Barcelona, Spain. ⟨hal-02740399⟩
  • Marie-Agnès Bringer, Nicolas Barnich, Anne-Lise Glasser, Olivier Bardot, Christine Martin, et al.. Implication de HtrA dans la multiplication en macrophages J774-A1 de la souche de Escherichia coli adhérente et invasive LF82 associée à la maladie de Crohn. Société Française de Microbiologie, May 2004, Bordeaux, France. ⟨hal-02831628⟩
  • Jerome Boudeau, Nicolas Barnich, Marie-Agnès Bringer, Anne-Lise Glasser, Arlette Darfeuille-Michaud. Adherent-invasive Escherichia coli: a putative new Escherichia coli pathotype associated with Crohn’s disease. The World of Microbes, International Union of Microbiological Societies, Jul 2002, Paris, France. ⟨hal-02831629⟩

Poster25 documents

  • Sandrine Brugiroux, Thomas Sauvaitre, Gwenaelle Roche, Célia Ledieu, Caroline Chevarin, et al.. Impacts of additive food E171 (titanium dioxide) on the gut microbiota and colorectal carcinogenesis in APC min/+ murine model. DDW, May 2019, SAN DIEGO, United States. ⟨hal-02148515⟩
  • Nicolas Barnich, Jérémy Denizot, Allison Agus. High methyl diet impair E. coli overgrowth, limits AIEC colonization and inflammation by epigenentic regulation of genes expression. DDW, May 2019, SAN DIEGO, United States. ⟨hal-02187861⟩
  • Jim Imai, Sho Kitamoto, Atsushi Hayashi, Kohei Sugihara, Tina L., et al.. Adherent-invasive Escherichia coli colonization promotes intestinal fibrosis via activation of IL-32-ST2 signaling. DDW 2019, May 2019, SAN DIEGO, United States. ⟨hal-02390424⟩
  • Sandrine Brugiroux, Thomas Sauvaitre, Gwenaelle Roche, Célia Ledieu, Caroline Chevarin, et al.. Impacts of additive food E171 (titanium dioxide) on the gut microbiota and colorectal carcinogenesis in APCmin/+ murine model. Digestive Disease Week (DDW), May 2019, San Diego, United States. ⟨hal-02527818⟩
  • Zhilu Xu, Jingwan Zhang, Tao Zuo, Caroline Chevarin, Lok Cheung Chu, et al.. Role of Adherent-invasive Escherichia coli in inflammatory bowel disease - epidemiology, genetics and therapeutics. IDDF, Jun 2019, Hong Kong, China. ⟨hal-02338902⟩
  • Zhilu Xu, Jingwan Zhang, Tao Zuo, Caroline Chevarin, Lok Cheung, et al.. Adherent-invasive Escherichia coli in inflammatory bowel disease impacts fecal microbiota transplantation efficacy by hindering engraftment of beneficial bacteria. DDW2019, May 2019, SAN DIEGO, United States. ⟨hal-02338765⟩
  • Zhilu Xu, Jingwan Zhang, Tao Zuo, Caroline Chevarin, Lok Cheung, et al.. Adherent-invasive Escherichia coli in inflammatory bowel disease impacts fecal microbiota transplatation efficacy by hindering engraftment of beneficial bacteria. ECCO 2019, Mar 2019, COPENHAGUE, Denmark. ⟨hal-02338806⟩
  • Romain Villéger, Binta Diémé, Marie Lagree, Gwenaëlle Roche, Julien Delmas, et al.. Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin. 12èmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique,, May 2019, Clermont-Ferrand, France. ⟨hal-02527848⟩
  • Romain Villéger, Binta Diémé, Marie Lagree, Gwenaëlle Roche, Julien Delmas, et al.. Infection by pathogenic E. coli induces a metabolic reprogramming of colonic epithelial cells in a colibactin-dependent manner. Digestive Disease Week (DDW), May 2019, San Diego, United States. ⟨hal-02527794⟩
  • Romain Villeger, Binta Diémé, Marie Lagrée, Julien Delmas, Gwenaëlle Roche, et al.. Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin. DDW, May 2019, SAN DIEGO, United States. ⟨hal-02148411⟩
  • R. Villeger, B. Dieme, M. Lagree, J. Delmas, G. Roche, et al.. Pathogenic E. coli induces a metabolic reprogramming in colonic epithelial cells through the production of colibactin.. 12èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2019, Clermont-Ferrand, France. ⟨hal-02288953⟩
  • Romain Villeger, Binta Diémé, Marie Lagrée, Gwenaëlle Roche, Julien Delmas, et al.. Infection by pathogenic E. coli induces a metolic reprogramming of colonic epithelial cells in a colibactin-dependent manner. DDW, May 2019, SAN DIEGO, United States. ⟨hal-02148433⟩
  • Anaïs Larabi, Guillaume Dalmasso, Julien Delmas, Nicolas Barnich, Hang Thi Thu Nguyen. Exosomes released from intestinal epithelial cells infected with Crohn's disease-associated adherent-invasive E. coli transfer miRNAs into recipient cells to inhibit autophagy. Congres KEYSTONE, Mar 2019, MONTREAL, Canada. ⟨hal-02393855⟩
  • Adeline Sivignon, Madeleine Cauwel, Clarisse Bridot, Medy C. Nongbe, David Deniaud, et al.. Cellulose fonctionnalisée par un heptil-mannose: un nouvel outil thérapeutique et diagnostic ciblant les Escherichia coli adhérents et invasifs. 15e congrès naional de la SFM, Sep 2019, PARIS, France. ⟨hal-02196790⟩
  • Adeline Sivignon, Madeleine Cauwel, Clarisse Bridot, Medy C. Nongbe, David Deniaud, et al.. Cellulose fonctionnalisée par un heptyl-mannose: un nouvel outil thérapeutique et diagnostic ciblant les Escherichia coli adherents et invasifs. 15eme congres national de la SFM, Sep 2019, Paris, France. ⟨hal-02338687⟩
  • F. Maillard, E. Vazeille, P. Sauvanet, P Sirvent, R. Bonnet, et al.. Effet préventif de l’activité physique sur l’interaction tissu adipeux – microbiote intestinal chez des souris CEABAC10 exposées à la souche AIEC LF82. JFHOD 2018, Journées Francophones d’Hépato-Gastroentérologie et d’Oncologie Digestive, Mar 2018, Paris, France. 2018. ⟨hal-01807566⟩
  • Harry Sokol, L. Brot, C. Stefanescu, C. Auzolle, Nicolas Barnich, et al.. Microbiota diversity at time of surgery predict endoscopic recurrence in Crohn's disease: results of a prospective study of the REMIND group. Advances in inflammatory bowel diseases, 2017, Vienne, Australia. OXFORD UNIV PRESS, Journal of Crohn's and Colitis, 11, pp.1, 2017, Journal of Crohn's and Colitis. ⟨hal-01600722⟩
  • A. Buisson, Emilie Vazeille, L. Ouchchane, Marion Goutte, J. -P. Hugot, et al.. Macrophages from Crohn's disease patients showed a defect to control adherent-invasive Escherichia coli replication influenced by genetic host factors. 12. Congress of ECCO 2017, Feb 2017, Barcelone, Spain. Oxford University Press, Journal of Crohn's and Colitis, 11, 2017. ⟨hal-02734052⟩
  • Cecily Lucas, Guillaume Dalmasso, Pierre Sauvanet, Denis Pezet, Nicolas Barnich, et al.. Autophagy inhibits DNA damage induced by colorectal cancer-associated Escherichia coli. CFATG, Oct 2017, BORDEAUX, France. ⟨hal-01631705⟩
  • Anthony Buisson, Emilie Vazeille, Régine Minet-Quinard, Marion Goutte, D. Bouvier, et al.. Faecal chitinase 3-like 1 is a reliable marker as accurate as faecal calprotectin in detecting endoscopic activity in adult patients with inflammatory bowel diseases. 11. Congress of European Crohn's and Colitis Organisation, Mar 2016, Amsterdam, Netherlands. Journal of Crohn's and Colitis, 10, 2016, Journal of Crohn's and Colitis. ⟨hal-01602902⟩
  • Alexis Bretin, Jessica Carrière, Guillaume Dalmasso, Agnes Bergougnoux, Wafa B'Chir, et al.. Activation of the EIF2AK4-EIF2A/eIF2 alpha-ATF4 pathway triggers autophagy response to Crohn disease-associated adherent-invasive escherichia coli infection. 7. Proteasomes and Autophagy Workshop, Apr 2016, clermont-ferrand, France. 320 p., 2016, 7th Proteasomes and Autophagy Workshop. ⟨hal-02740425⟩
  • A. Bretin, J. Carrière, Marion Dalmasso, N. Barnich, A. Bergougnoux, et al.. Activation of the GCN2/eIF2alpha/ATF4 signaling pathway triggers autophagy response to infection with Crohn's disease-associated adherent-invasive Escherichia coli. 10. Congress of ECCO. Inflammatory Bowel Diseases, Feb 2015, Barcelone, Spain. Journal of Crohn's and Colitis, 9, 2015, 10th Congress of ECCO. Inflammatory Bowel Diseases. ⟨hal-02740431⟩
  • F. Carvalho, A. Lashermes, S. Miquel, Rebeca Martin Rosique, A. Gelor, et al.. Impact of intestinal dysbiosis on mouse models of colonic hypersensitivity. NeuroGASTRO 2015, Jun 2015, Istanbul, Turkey. John Wiley and Sons, Neurogastroenterology and Motility, 27 (Suppl. S2), 2015, Neurogastroenterology and Motility. ⟨hal-01535295⟩
  • Marie-Agnès Bringer, Nicolas Barnich, Anne-Lise Glasser, Olivier Bardot, Christine Martin, et al.. Implication de HtrA dans la multiplication en macrophages J774-A1 de la souche de Escherichia coli adhérente et invasive LF82 associée à la maladie de Crohn. Société Française de Microbiologie, May 2004, Bordeaux, France. 1 p., 2004. ⟨hal-02828372⟩
  • Nicolas Barnich, Marie-Agnès Bringer, Anne-Lise Glasser, Arlette Darfeuille-Michaud. Identification of DNA sequence specific for adherent-invasive E. coli (AIEC) associated with Crohn’s disease. The World of Microbes, International Union of Microbiological Societies, Jul 2002, Paris, France. 1 p., 2002. ⟨hal-02828377⟩

Chapitre d'ouvrage1 document

  • Jessica Carrière, Nicolas Barnich, Thu Nguyen Hang Thi. Exosomes: From functions in host-pathogen interactions and immunity to diagnostic and therapeutic opportunities. Reviews of Physiology, Biochemistry and Pharmacology, 172, SPRINGER-VERLAG BERLIN, pp.37, 2016, Reviews of Physiology Biochemistry and Pharmacology, 978-3-319-49902-4; 978-3-319-49901-7. ⟨10.1007/112_2016_7⟩. ⟨hal-02800535⟩

Pré-publication, Document de travail2 documents

  • Victoria Prudent, Gaëlle Demarre, Emilie Vazeille, Maxime Wery, Antinéa Ravet, et al.. The Crohn’s disease-related AIEC strain LF82 assembles a biofilm-like matrix to protect intracellular microcolonies from phagolysosomal attack. 2020. ⟨hal-02916272⟩
  • Gaëlle Demarre, Victoria Prudent, Hanna Schenk, Emilie Rousseau, Marie-Agnès Bringer, et al.. Intracellular AIEC LF82 relies on SOS and stringent responses to survive, multiply and tolerate antibiotics. 2019. ⟨hal-02789654⟩