Co-auteurs

Nombre de documents

55

CV Nicolas Barnich


Article dans une revue48 documents

  • Alexis Bretin, Cecily Lucas, Anaïs Larabi, Guillaume Dalmasso, Elisabeth Billard, et al.. AIEC infection triggers modification of gut microbiota composition in genetically predisposed mice, contributing to intestinal inflammation. Scientific Reports, Nature Publishing Group, 2018, 8 (1), 〈10.1038/s41598-018-30055-y〉. 〈hal-01897658〉
  • A. Lopès, Al Cassé, E. Billard, E. Boulcourt-Sambou, G. Roche, et al.. Deciphering the immune microenvironment of a tissue by digital imaging and cognition network. Scientific Reports, Nature Publishing Group, 2018, 8 (1), 〈10.1038/s41598-018-34731-x〉. 〈hal-01926377〉
  • Manon Defaye, Céline Nourrisson, Elodie Baudu, Ivan Warwzyniak, Virginie Bonnin, et al.. Efficient and reproducible experimental infections of rats with Blastocystis spp.. PLoS ONE, Public Library of Science, 2018, 13 (11), 〈10.1371/journal.pone.0207669〉. 〈hal-01931278〉
  • Gwladys Sevrin, Sébastien Massier, Benoit Chassaing, Allison Agus, Julien Delmas, et al.. Adaptation of adherent-invasive E. coli to gut environment: Impact on flagellum expression and bacterial colonization ability. Gut microbes, Taylor & Francis, 2018, pp.1 - 17. 〈10.1080/19490976.2017.1421886〉. 〈hal-01730371〉
  • Guillaume Le Baut, Claire O'Brien, Paul Pavli, Maryline Roy, Philippe Seksik, et al.. Prevalence of Yersinia Species in the Ileum of Crohn's Disease Patients and Controls. Frontiers in Cellular and Infection Microbiology, Frontiers Media, 2018, 8, 〈10.3389/fcimb.2018.00336〉. 〈hal-01897651〉
  • Tiphanie Faïs, Julien Delmas, Nicolas Barnich, Richard Bonnet, Guillaume Dalmasso. Colibactin: More Than a New Bacterial Toxin. Toxins, MDPI, 2018, 10 (4), 〈10.3390/toxins10040151〉. 〈hal-01796959〉
  • Romain Villeger, Amélie Lopès, Julie Veziant, Johan Gagniere, Nicolas Barnich, et al.. Microbial markers in colorectal cancer detection and/or prognosis. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2018, 24 (22), pp.2327 - 2347. 〈10.3748/wjg.v24.i22.2327〉. 〈hal-01897664〉
  • S. Roussel, S Sivignon, S De Vallée, S Garrait, S. Denis, et al.. Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407. Applied Microbiology and Biotechnology, Springer Verlag, 2018, 〈10.1007/s00253-018-9053-y〉. 〈hal-01809200〉
  • Tetiana Dumych, Nao Yamakawa, Adeline Sivignon, Estelle Garénaux, Stefania Robakiewicz, et al.. Oligomannose-Rich Membranes of Dying Intestinal Epithelial Cells Promote Host Colonization by Adherent-Invasive E. coli. Frontiers in Microbiology, Frontiers Media, 2018, 9, 〈10.3389/fmicb.2018.00742〉. 〈hal-01796957〉
  • Charlotte Cordonnier, Lucie Etienne-Mesmin, Jonathan Thevenot, Amandine Rougeron, Sandra Renier, et al.. Enterohemorrhagic Escherichia coli pathogenesis: role of Long polar fimbriae in Peyer's patches interactions. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.1-14. 〈10.1038/srep44655〉. 〈hal-01607483〉
  • Dimitri Alvarez dorta, Thibaut Chalopin, Adeline Sivignon, Jérôme De ruyck, Tetiana I. Dumych, et al.. Physiochemical Tuning of Potent Escherichia coli Anti-Adhesives by Microencapsulation and Methylene Homologation. ChemMedChem, Wiley-VCH Verlag, 2017, 12 (12), pp.986 - 998. 〈10.1002/cmdc.201700061〉. 〈hal-01639771〉
  • Johan Gagniere, Virginie Bonnin, Anne-Sophie Jarrousse, Emilie Cardamone, Allison Agus, et al.. Interactions between microsatellite instability and human gut colonization by Escherichia coli in colorectal cancer. Clinical Science, Portland Press, 2017, 131 (6), pp.471 - 485. 〈10.1042/CS20160876〉. 〈hal-01594568〉
  • Matthieu Galtier, Luisa De Sordi, Adeline Sivignon, Amélie De Vallée, Christel Neut, et al.. Bacteriophages targeting adherent invasive Escherichia coli strains as a promising new treatment for Crohn's disease. Journal of Crohn's and Colitis, Elsevier - Oxford University Press, 2017, Advance publication online, 〈https://academic.oup.com/ecco-jcc/article-abstract/doi/10.1093/ecco-jcc/jjw224/2895107/Bacteriophages-Targeting-Adherent-Invasive?redirectedFrom=fulltext〉. 〈10.1093/ecco-jcc/jjw224〉. 〈pasteur-01538942〉
  • Cecily Lucas, Nicolas Barnich, Hang Thi Thu Nguyen. Microbiota, inflammation and colorectal cancer. International Journal of Molecular Sciences, MDPI, 2017, 18 (6), 〈10.3390/ijms18061310〉. 〈hal-01608007〉
  • Adeline Sivignon, Julie Bouckaert, Julien Bernard, Sebastien G. Gouin, Nicolas Barnich. The potential of FimH as a novel therapeutic target for the treatment of Crohn’s disease. Expert Opinion on Therapeutic Targets, Taylor & Francis, 2017, 21 (9), pp.837 - 847. 〈10.1080/14728222.2017.1363184〉. 〈hal-01633566〉
  • Carolina Palmela, Caroline Chevarin, Zhilu Xu, Joana Torres, Gwladys Sevrin, et al.. Adherent-invasive Escherichia coli in inflammatory bowel disease. Gut, BMJ Publishing Group, 2017, 〈10.1136/gutjnl-2017-314903〉. 〈hal-01681169〉
  • Anthony Buisson, Emilie Vazeille, Régine Minet-Quinard, Marion Goutte, Damien Bouvier, et al.. Fecal Matrix Metalloprotease-9 and Lipocalin-2 as Biomarkers in Detecting Endoscopic Activity in Patients With Inflammatory Bowel Diseases. Journal of Clinical Gastroenterology, Lippincott, Williams & Wilkins, 2017, 〈10.1097/MCG.0000000000000837〉. 〈hal-01681173〉
  • Amandine Lashermes, Ludivine Boudieu, Julie Barbier, Benoît Sion, Agathe Gelot, et al.. Adherent-Invasive E. coli enhances colonic hypersensitivity and P2X receptors expression during post-infectious period. Gut microbes, Taylor & Francis, 2017, 9 (1), pp.26-37. 〈10.1080/19490976.2017.1361091〉. 〈hal-01639543〉
  • Allison Agus, Jérémy Denizot, Jonathan Thevenot, Margarita Martinez-Medina, Sébastien Massier, et al.. Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.19032. 〈10.1038/srep19032〉. 〈hal-01928173〉
  • Lucie Gibold, Estelle Garénaux, Guillaume Dalmasso, Camille Gallucci, David Cia, et al.. The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associated Escherichia coli. Cellular Microbiology, Wiley, 2016, 18 (5), pp.617 - 631. 〈10.1111/cmi.12539〉. 〈hal-01926372〉
  • Johan Gagnière, Jennifer Raisch, Julie Veziant, Nicolas Barnich, Richard Bonnet, et al.. Gut microbiota imbalance and colorectal cancer. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2016, 22 (2), 〈10.3748/wjg.v22.i2.501〉. 〈hal-01396927〉
  • Johan Gagnière, Jennifer Raisch, Julie Veziant, Nicolas Barnich, Richard Bonnet, et al.. Gut microbiota imbalance and colorectal cancer.. World Journal of Gastroenterology, Baishideng Publishing Group Co. Limited, 2016, 22 (2), pp.501-18. 〈10.3748/wjg.v22.i2.501 〉. 〈pasteur-01351170〉
  • Sabine Szunerits, Oleksandr Zagorodko, Virginie Cogez, Tetiana Dumych, Thibaut Chalopin, et al.. Differentiation of Crohn’s Disease-Associated Isolates from Other Pathogenic Escherichia coli by Fimbrial Adhesion under Shear Force. Biology, MDPI 2016, 5 (2), 〈10.3390/biology5020014〉. 〈hal-01741244〉
  • Jennifer Raisch, Guillaume Dalmasso, Richard Bonnet, Nicolas Barnich, Mathilde Bonnet, et al.. How some bacteria of the commensal flora would exacerbate colorectal carcinogenesis?. médecine/sciences, EDP Sciences, 2016, 32 (2), pp.175 - 182. 〈publications.edpsciences.org/fr/〉. 〈10.1051/medsci/20163202011〉. 〈hal-01397583〉
  • Jennifer Raisch, Guillaume Dalmasso, Richard Bonnet, Nicolas Barnich, Mathilde Bonnet, et al.. Certaines bactéries de la flore commensale exacerberaient-elles la carcinogenèse colorectale ?. médecine/sciences, EDP Sciences, 2016, 32 (2), pp.175-82. 〈10.1051/medsci/20163202011 〉. 〈pasteur-01351541〉
  • Xibo Yan, Adeline Sivignon, Nicolas Barnich, Sébastien G Gouin, Julie Bouckaert, et al.. A library of heptyl mannose-functionalized copolymers with distinct compositions, microstructures and neighboring non-sugar motifs as potent antiadhesives of type 1 piliated E. coli. Polymer Chemistry, Royal Society of Chemistry - RSC, 2016, 7, pp.2674-2683. 〈10.1039/c6py00118a〉. 〈hal-01396465〉
  • Anthony Buisson, Marie-Agnès Bringer, Nicolas Barnich, Emilie Vazeille. Macrophages Versus Escherichia coli: A Decisive Fight in Crohn's Disease. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2016, 22 (12), pp.2943 - 2955. 〈10.1097/MIB.0000000000000946〉. 〈hal-01493355〉
  • Emilie Vazeille, Benoit Chassaing, Anthony Buisson, Anaëlle Dubois, Amélie De Vallée, et al.. GipA Factor Supports Colonization of Peyerʼs Patches by Crohnʼs Disease-associated Escherichia Coli. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2016, 22 (1), pp.68 - 81. 〈http://journals.lww.com/ibdjournal/Abstract/2016/01000/GipA_Factor_Supports_Colonization_of_Peyer_s.7.aspx〉. 〈10.1097/MIB.0000000000000609〉. 〈hal-01396555〉
  • T. Chalopin, Y. Brissonnet, Adeline Sivignon, D. Deniaud, L. Cremet, et al.. Inhibition profiles of mono- and polyvalent FimH antagonists against 10 different Escherichia coli strains. Organic and Biomolecular Chemistry, Royal Society of Chemistry, 2015, 13 (46), pp.11369 - 11375. 〈10.1039/c5ob01581b〉. 〈hal-01931394〉
  • Xibo Yan, Adeline Sivignon, Nao Yamakawa, Agnès Crepet, Christophe Travelet, et al.. Glycopolymers as Antiadhesives of E. coil Strains Inducing Inflammatory Bowel Diseases. Biomacromolecules, American Chemical Society, 2015, 16, pp.1827-1836. 〈10.1021/acs.biomac.5b00413〉. 〈hal-01174249〉
  • Xibo Yan, Adeline Sivignon, Pierre Alcouffe, Béatrice Burdin, Sabine Favre-Bonte, et al.. Brilliant glyconanocapsules for trapping of bacteria. Chemical Communications, Royal Society of Chemistry, 2015, 51, pp.13193-13196. 〈10.1039/c5cc04653j〉. 〈hal-01221578〉
  • Emilie Vazeille, Anthony Buisson, Marie-Agnès Bringer, Marion Goutte, Lemlih Ouchchane, et al.. Monocyte-derived macrophages from Crohn’s disease patients are impaired in the ability to control intracellular adherent-invasive Escherichia coli and exhibit disordered cytokine secretion profile. Journal of Crohn's and Colitis, Elsevier - Oxford University Press, 2015, 9 (5), pp.410-420. 〈10.1093/ecco-jcc/jjv053〉. 〈hal-01594239〉
  • Adeline Sivignon, Xibo Yan, Dimitri Alvarez Dorta, Richard Bonnet, Julie Bouckaert, et al.. Development of Heptylmannoside-Based Glycoconjugate Antiadhesive Compounds against Adherent-Invasive Escherichia coli Bacteria Associated with Crohn's Disease. mBio, American Society for Microbiology, 2015, 6 (6), pp.e01298-15. 〈10.1128/mBio.01298-15〉. 〈hal-01265411〉
  • Jérémy Denizot, Alexis Desrichard, Allison Agus, Nancy Uhrhammer, Nicolas Dreux, et al.. Diet-induced hypoxia responsive element demethylation increases CEACAM6 expression, favouring Crohn's disease-associated Escherichia coli colonisation. Gut, BMJ Publishing Group, 2015, 64 (3), pp.428 - 437. 〈10.1136/gutjnl-2014-306944〉. 〈hal-01928389〉
  • Adeline Sivignon, Amélie De Vallée, Nicolas Barnich, Jérémy Denizot, Claude Darcha, et al.. Saccharomyces cerevisiae CNCM I-3856 Prevents Colitis Induced by AIEC Bacteria in the Transgenic Mouse Model Mimicking Crohnʼs Disease. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2015, 21 (2), pp.276 - 286. 〈10.1097/MIB.0000000000000280〉. 〈hal-01928174〉
  • Allison Agus, Sébastien Massier, Arlette Darfeuille-Michaud, Elisabeth Billard, Nicolas Barnich. Understanding Host-Adherent-Invasive Escherichia coli Interaction in Crohn’s Disease: Opening Up New Therapeutic Strategies. BioMed Research International , Hindawi Publishing Corporation, 2014, 2014, pp.1 - 16. 〈10.1155/2014/567929〉. 〈hal-01931428〉
  • Jennifer Raisch, Adeline Sivignon, Benoit Chassaing, Pierre Lapaquette, Sylvie Miquel, et al.. In Memoriam, Arlette Darfeuille-Michaud, PhD. Gut, BMJ Publishing Group, 2014, 63 (11), pp.1681-1682. 〈hal-01951066〉
  • Jennifer Raisch, Adeline Sivignon, Benoit Chassaing, Pierre Lapaquette, Sylvie Miquel, et al.. In Memoriam, Arlette Darfeuille-Michaud, PhD. Gastroenterology, WB Saunders, 2014, 147 (5), pp.943-944. 〈10.1136/gutjnl-2014-308182〉. 〈hal-01951060〉
  • N. Barnich, Jérémy Denizot, A. Darfeuille-Michaud. E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients. Pathologie Biologie, Elsevier Masson, 2013, 61 (5), pp.e65 - e69. 〈10.1016/j.patbio.2010.01.004〉. 〈hal-01928194〉
  • Nicolas Dreux, Jérémy Denizot, Margarita Martinez-Medina, Alexander Mellmann, Maria Billig, et al.. Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response. PLoS Pathogens, Public Library of Science, 2013, 9 (1), pp.e1003141. 〈10.1371/journal.ppat.1003141〉. 〈hal-01928191〉
  • Margarita Martinez-Medina, Jérémy Denizot, Nicolas Dreux, Frédéric Robin, Elisabeth Billard, et al.. Western diet induces dysbiosis with increased E coli in CEABAC10 mice , alters host barrier function favouring AIEC colonisation. Gut, BMJ Publishing Group, 2013, 63 (1), pp.116 - 124. 〈10.1136/gutjnl-2012-304119〉. 〈hal-01928324〉
  • Claire L O'Brien, Marie-Agnès Bringer, Kathryn E Holt, David M Gordon, Anaëlle L Dubois, et al.. Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli. Gut, BMJ Publishing Group, 2013, 66 (8), pp.1382-1389. 〈http://gut.bmj.com/〉. 〈10.1136/gutjnl-2015-311059〉. 〈hal-01393979〉
  • Jérémy Denizot, Nicolas Dreux, Arlette Darfeuille-Michaud, Nicolas Barnich. Importance of Bacteria as Trigger in Inflammatory Bowel Disease. Journal of Gastrointestinal & Digestive System, OMICS International, 2012, 01, pp.S8. 〈10.4172/2161-069x.s8-003〉. 〈hal-01928200〉
  • Jérémy Denizot, Adeline Sivignon, Frederick Barreau, Claude Darcha, Carlos H.F. Chan, et al.. Adherent-Invasive Escherichia coli Induce Claudin-2 Expression and Barrier Defect in CEABAC10 Mice and Crohnʼs Disease Patients. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2012, 18 (2), pp.294 - 304. 〈10.1002/ibd.21787〉. 〈hal-01928192〉
  • Nathalie Rolhion, Nicolas Barnich, Marie-Agnès Bringer, Anne-Lise Glasser, Julien Ranc, et al.. Abnormally expressed ER stress response chaperone Gp96 in CD favours adherent-invasive Escherichia coli invasion. Growth Development and Aging, Growth Publishing Comp Inc, 2010, 59 (10), pp.1355-1362. 〈10.1136/gut.2010.207456〉. 〈hal-01218270〉
  • Frédéric Carvalho, Nicolas Barnich, Adeline Sivignon, Claude Darcha, Carlos Chan, et al.. Crohn's disease adherent-invasive Escherichia coli colonize and induce strong gut inflammation in transgenic mice expressing human CEACAM. Journal of Experimental Medicine, Rockefeller University Press, 2009, 206 (10), pp.2179 - 2189. 〈10.1084/jem.20090741〉. 〈hal-01931313〉
  • Marie-Agnès Bringer, Nicolas Barnich, Anne-Lise Glasser, Olivier Bardot, Arlette Darfeuille-Michaud. HtrA Stress Protein Is Involved in Intramacrophagic Replication of Adherent and Invasive Escherichia coli Strain LF82 Isolated from a Patient with Crohn's Disease. Infection and Immunity, American Society for Microbiology, 2005, 73 (2), pp.712 - 721. 〈10.1128/IAI.73.2.712-721.2005〉. 〈hal-01917182〉
  • Arlette Darfeuille-Michaud, Christel Neut, Nicolas Barnich, Emmanuel Lederman, Patrick Di Martino, et al.. Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease. Gastroenterology, WB Saunders, 1998, 115 (6), pp.1405-1413. 〈hal-01951145〉

Communication dans un congrès2 documents

  • Dimitri Alvarez Dorta, Thibaut Chalopin, Adeline Sivignon, Jerome De Ruyck, Tetiana I. Dumych, et al.. Physiochemical tuning of potent escherichia coli anti-adhesives by microencapsulation and methylene homologation. 52. International Conference on Medicinal Chemistry (RICT) of the French-Medicinal-Chemistry-Society (SCT) - Interfacing Chemical Biology and Drug Discovery, Jul 2016, Caen, France. 12 (12), pp.13, 2017, ChemMedChem 〈10.1002/cmdc.201700061〉. 〈hal-01607981〉
  • Emilie Vazeille, Benoit Chassaing, Anthony Buisson, Anaëlle Dubois, Amélie De Vallée, et al.. Mo1770 Gipa factor supports Crohn's disease-associated Escherichia Coli growth in Peyer's patches by providing resistance to bactericidal stress encountered in macrophages. Digestive Disease Week (DDW), May 2015, Philadelphia, United States. 148 (4), 2015, Gastroenterology. 〈10.1016/S0016-5085(15)32400-8〉. 〈hal-01247407〉

Poster5 documents

  • F. Maillard, E. Vazeille, P. Sauvanet, P Sirvent, R. Bonnet, et al.. Effet préventif de l’activité physique sur l’interaction tissu adipeux – microbiote intestinal chez des souris CEABAC10 exposées à la souche AIEC LF82. JFHOD 2018, Journées Francophones d’Hépato-Gastroentérologie et d’Oncologie Digestive, Mar 2018, Paris, France. 2018. 〈hal-01807566〉
  • Harry Sokol, L. Brot, C. Stefanescu, C. Auzolle, Nicolas Barnich, et al.. Microbiota diversity at time of surgery predict endoscopic recurrence in Crohn's disease: results of a prospective study of the REMIND group. Advances in inflammatory bowel diseases, 2017, Vienne, Australia. OXFORD UNIV PRESS, 11, pp.1, 2017, Journal of Crohn's and Colitis. 〈hal-01600722〉
  • Cecily Lucas, Guillaume Dalmasso, Pierre Sauvanet, Denis Pezet, Nicolas Barnich, et al.. Autophagy inhibits DNA damage induced by colorectal cancer-associated Escherichia coli. CFATG, Oct 2017, BORDEAUX, France. 〈hal-01631705〉
  • Anthony Buisson, Emilie Vazeille, Régine Minet-Quinard, Marion Goutte, D. Bouvier, et al.. Faecal chitinase 3-like 1 is a reliable marker as accurate as faecal calprotectin in detecting endoscopic activity in adult patients with inflammatory bowel diseases. 11. Congress of European Crohn's and Colitis Organisation, Mar 2016, Amsterdam, Netherlands. 10, 2016, Journal of Crohn's and Colitis. 〈hal-01602902〉
  • F. Carvalho, A. Lashermes, S. Miquel, Rebeca Martin Rosique, A. Gelor, et al.. Impact of intestinal dysbiosis on mouse models of colonic hypersensitivity. NeuroGASTRO 2015, Jun 2015, Istanbul, Turkey. John Wiley and Sons, 27 (Suppl. S2), 2015, Neurogastroenterology and Motility. 〈hal-01535295〉