Nathalie Simon

Documents

Publications

	Seasonal dynamics of marine protist communities in tidally mixed coastal waters Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩ Article dans une revue hal-03781932v1
	Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel Laure Arsenieff , Florence Le Gall , Fabienne Rigaut-Jalabert , Frédéric Mahé , Diana Sarno The International Society of Microbiologial Ecology Journal, 2020, 14 (8), pp.1966-1981. ⟨10.1038/s41396-020-0659-6⟩ Article dans une revue hal-02888711v1
	Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean David Demory , Anne-Claire Baudoux , Adam Monier , Nathalie Simon , Christophe Six The International Society of Microbiologial Ecology Journal, 2019, 13 (1), pp.132-146. ⟨10.1038/s41396-018-0248-0⟩ Article dans une revue hal-01973977v1
	Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive I. Rombouts , N. Simon , A. Aubert , T. Cariou , E. Feunteun Ecological Indicators, 2019, 102, pp.265-277. ⟨10.1016/j.ecolind.2019.02.009⟩ Article dans une revue hal-03485708v1
	First Viruses Infecting the Marine Diatom Guinardia delicatula Laure Arsenieff , Nathalie Simon , Fabienne Rigaut-Jalabert , Florence Le Gall , Samuel Chaffron Frontiers in Microbiology, 2019, 9, pp.3235. ⟨10.3389/fmicb.2018.03235⟩ Article dans une revue hal-01994588v1
	Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates Nathalie Simon , Elodie Foulon , Daphné Grulois , Christophe Six , Yves Desdevises Protist, 2017, 168 (5), pp.612-635. ⟨10.1016/j.protis.2017.09.002⟩ Article dans une revue hal-01614739v1
	Micromonas versus virus: New experimental insights challenge viral impact Eliana Ruiz , Anne-Claire Baudoux , Nathalie Simon , Ruth-Anne Sandaa , T. Frede Thingstad Environmental Microbiology, 2017, 49 (1), pp.168-179. ⟨10.1111/1462-2920.13733⟩ Article dans une revue hal-01511092v1
	Geographic patterns of biodiversity in European coastal marine benthos Herman Hummel , Pim van Avesaath , Sander Wijnhoven , Loran Kleine-Schaars , Steven Degraer Journal of the Marine Biological Association of the UK, 2017, 97 (3), pp.507-523. ⟨10.1017/S0025315416001119⟩ Article dans une revue hal-02470399v1
	Temperature is a key factor in Micromonas-virus interactions David Demory , Laure Arsenieff , Nathalie Simon , Christophe Six , Fabienne Rigaut-Jalabert The International Society of Microbiologial Ecology Journal, 2017, 11 (3), pp.601-612. ⟨10.1038/ismej.2016.160⟩ Article dans une revue hal-01464528v1
	Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study Jonne Kotta , Helen Orav-Kotta , Holger Jänes , Herman Hummel , Christos Arvanitidis Journal of the Marine Biological Association of the UK, 2017, 97 (3), pp.525-538. ⟨10.1017/S0025315416001351⟩ Article dans une revue hal-02470386v1
	Benthic protists: the under-charted majority Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩ Article dans une revue hal-01383722v1
	Interplay between the genetic clades of Micromonas and their viruses in the Western English Channel Anne-Claire Baudoux , H Lebredonchel , H Dehmer , M Latimier , R Edern Environmental Microbiology Reports, 2015, 7 (5), pp.765-773. ⟨10.1111/1758-2229.12309⟩ Article dans une revue hal-01196410v1
	Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩ Article dans une revue hal-01191731v1
	The founding charter of the Genomic Observatories Network Neil Davies , Dawn Field , Linda Amaral-Zettler , Melody S. Clark , John Deck GigaScience, 2014, 3, pp.2. ⟨10.1186/2047-217X-3-2⟩ Article dans une revue hal-01110116v1
	Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton Laure Bellec , Camille Clerissi , Roseline Edern , Elodie Foulon , Nathalie Simon BMC Evolutionary Biology, 2014, 14 (1), pp.59. ⟨10.1186/1471-2148-14-59⟩ Article dans une revue hal-01100644v1
	Patterns of Rare and Abundant Marine Microbial Eukaryotes Ramiro Logares , Stéphane Audic , David Bass , Lucie Bittner , Christophe Boutte Current Biology - CB, 2014, 24 (8), pp.813-821. ⟨10.1016/j.cub.2014.02.050⟩ Article dans une revue hal-01149637v1
	Ecological and evolutionary genomics of marine photosynthetic organisms. Susana M Coelho , Nathalie Simon , Sophia Ahmed , J Mark Cock , Frédéric Partensky Molecular Ecology, 2013, 22 (3), pp.867-907. ⟨10.1111/mec.12000⟩ Article dans une revue hal-00817749v1
	An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English Channel, France): data collected from 2000 to 2010 L. Guilloux , Fabienne Rigaut-Jalabert , Fabien Jouenne , Stephanie Ristori , Manon Viprey Cahiers de Biologie Marine, 2013, 54 (2), pp.247-256 Article dans une revue hal-01253993v1
	Interactions between scientists, managers and policy makers in the framework of the French MediOs project on Ostreopsis (2008-2010) Rodolphe Lemée , Luisa Mangialajo , Stéphanie Cohu , Zouher Amzil , A. Blanfuné Cryptogamie Algologie, 2012, 33 (2), pp.137-142. ⟨10.7872/crya.v33.iss2.2011.137⟩ Article dans une revue hal-00927010v1
	Distribution and host diversity of Amoebophryidae parasites across oligotrophic waters of the Mediterranean Sea R. Siano , C. Alves-De-Souza , Elodie Foulon , El Mahdi Bendif , Nathalie Simon Biogeosciences, 2011, 8 (2), pp.267-278. ⟨10.5194/bg-8-267-2011⟩ Article dans une revue hal-01254008v1
	Occurrence of the toxic dinoflagellate Ostreopsis cf. ovata in relation with environmental factors in Monaco (NW Mediterranean) Stephanie Cohu , Thierry Thibaut , Luisa Mangialajo , Jean-Philippe Labat , Ornella Passafiume Marine Pollution Bulletin, 2011, 62 (12), pp.2681-2691. ⟨10.1016/j.marpolbul.2011.09.022⟩ Article dans une revue hal-00927014v1
	Diversity and evolution of marine phytoplankton Nathalie Simon , Anne-Lise Cras , Elodie Foulon , Rodolphe Lemée Comptes Rendus Biologies, 2009, 332 (2-3), pp.159-170. ⟨10.1016/j.crvi.2008.09.009⟩ Article dans une revue hal-01254022v1
	Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry. Isabelle C. Biegala , Fabrice Not , Daniel Vaulot , Nathalie Simon Applied and Environmental Microbiology, 2003 Article dans une revue hal-01829143v1
	Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense Nathalie Simon , Isabelle C. Biegala , Elisabeth Smith , Daniel Vaulot Aquatic Microbial Ecology, 2002, 28, pp.249-256. ⟨10.3354/ame028249⟩ Article dans une revue ird-03759327v1
	Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense N Simon , Ic Biegala , Ea Smith , D. Vaulot Aquatic Microbial Ecology, 2002, 28, pp.249 - 256. ⟨10.3354/ame028249⟩ Article dans une revue hal-01829170v1
	Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition N Not , N Simon , Ic Biegala , D. Vaulot Aquatic Microbial Ecology, 2002, 28, pp.157 - 166. ⟨10.3354/ame028157⟩ Article dans une revue hal-01829149v1
	Oligonucleotide Probes for the Identification of Three Algal Groups by Dot Blot and Fluorescent Whole-Cell Hybridization Laure Guillou , Nathalie Simon , Lisa Campbell , Erla Ornolfsdottir , Rene Groben Journal of Eukaryotic Microbiology, 2000, 47 (1), pp.76-84. ⟨10.1111/j.1550-7408.2000.tb00014.x⟩ Article dans une revue hal-03446951v1
	RECENT ADVANCES IN THE USE OF MOLECULAR TECHNIQUES TO ASSESS THE GENETIC DIVERSITY OF MARINE PHOTOSYNTHETIC MICROORGANISMS F Partensky , L Guillou , N Simon , D Vaulot Vie et Milieu / Life & Environment, 1997, pp.367-374 Article dans une revue hal-03103861v1
	The identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae N. Simon , J. Brenner , B. Edvardsen , L. K. Medlin European Journal of Phycology, 1997, 32 (4), pp.393-401 Article dans une revue hal-01663419v1
	IDENTIFICATION OF THE CLASS PRYMNESIOPHYCEAE AND THE GENUS PHAEOCYSTIS WITH RIBOSOMAL RNA-TARGETED NUCLEIC ACID PROBES DETECTED BY FLOW CYTOMETRY Laure Guillou , Martin Lange , Daniel Vaulot , Nathalie Simon , Rudolf Amann Journal of Phycology, 1996, 32 (5), pp.858-868. ⟨10.1111/j.0022-3646.1996.00858.x⟩ Article dans une revue hal-03446932v1

	Développement d’indicateurs de biodiversité: comparaison des données classiques et moléculaires pour étudier les changements de composition des communautés microbiennes marines Benjamin Alric , Nathalie Simon , Loïs Maignien , Isabelle Gailhard-Rocher , Dorothée Vincent Journées scientifiques du Service National d'Observation PHYTOBS, Pascal Claquin; Maud Lemoine; Fabienne Rigaut-Jalabert; Véronique Cornet-Barthaux; Nadine Masson, Sep 2022, Roscoff, France Communication dans un congrès hal-04496229v1
	DIVERSITY OF EUKARYOTIC PICOPLANKTON IN COASTAL WATERS Daniel Vaulot , Kadidja Romari , Klaus Valentine , Fabrice Not , Nathalie Simon J. Phycol, 2001, Oslo, Norway Communication dans un congrès ird-03759323v1

	Impact de la température sur les interactions entre la microalgue marine Micromonas et les virus qui l’infectent David Demory , Laure Arsenieff , Nathalie Simon , Christophe Six , Fabienne Rigaut-Jalabert VIIIe Colloque de l'Association Francophone d'Ecologie Microbienne,, Oct 2017, Camaret-sur-Mer, France Poster de conférence hal-02368611v1

	Viral infection impacts the 3D subcellular structure of the abundant marine diatom Guinardia delicatula Marie Walde , Cyprien Camplong , Colomban de Vargas , Anne-Claire Baudoux , Nathalie Simon 2022 Pré-publication, Document de travail hal-03853708v1
	Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans 2021 Pré-publication, Document de travail hal-03454364v1
	PHYTOBS dataset - French National Service of Observation for Phytoplankton in coastal waters Maud Lemoine , Pascal Claquin , Eric Abadie , Christophe Arnaud , Luis Felipe Artigas 2021 Pré-publication, Document de travail hal-03553028v1

	Données génétiques et indicateurs de biodiversité microbienne pélagique Benjamin Alric , Christian Jeanthon , Loïs Maignien , Urania Christaki , Nathalie Simon Station biologique de Roscoff, CNRS-UMPC-INSU, Place Georges Tessier, 29680 Roscoff. 2023, pp.78 Rapport hal-04495506v1
	Typologie des habitats marins benthiques de la Manche, de la Mer du Nord et de l'Atlantique VERSION 3 Noëmie Michez , Éric Thiébaut , Stanislas Dubois , Line Le Gall , Jean-Claude Dauvin [Rapport de recherche] UMS PatriNat, Muséum national d'Histoire naturelle, Paris. 2019, 52 p Rapport hal-02084698v1

Nathalie Simon

Publications

Seasonal dynamics of marine protist communities in tidally mixed coastal waters

Diversity and dynamics of relevant nanoplanktonic diatoms in the Western English Channel

Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean

Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive

First Viruses Infecting the Marine Diatom Guinardia delicatula

Micromonas versus virus: New experimental insights challenge viral impact

Geographic patterns of biodiversity in European coastal marine benthos

Temperature is a key factor in Micromonas-virus interactions

Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study

Benthic protists: the under-charted majority

Interplay between the genetic clades of Micromonas and their viruses in the Western English Channel

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

The founding charter of the Genomic Observatories Network

Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton

Patterns of Rare and Abundant Marine Microbial Eukaryotes

Ecological and evolutionary genomics of marine photosynthetic organisms.

An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English Channel, France): data collected from 2000 to 2010

Interactions between scientists, managers and policy makers in the framework of the French MediOs project on Ostreopsis (2008-2010)

Distribution and host diversity of Amoebophryidae parasites across oligotrophic waters of the Mediterranean Sea

Occurrence of the toxic dinoflagellate Ostreopsis cf. ovata in relation with environmental factors in Monaco (NW Mediterranean)

Diversity and evolution of marine phytoplankton

Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition

Oligonucleotide Probes for the Identification of Three Algal Groups by Dot Blot and Fluorescent Whole-Cell Hybridization

RECENT ADVANCES IN THE USE OF MOLECULAR TECHNIQUES TO ASSESS THE GENETIC DIVERSITY OF MARINE PHOTOSYNTHETIC MICROORGANISMS

The identification of Chrysochromulina and Prymnesium species (Haptophyta, Prymnesiophyceae) using fluorescent or chemiluminescent oligonucleotide probes: a means for improving studies on toxic algae

IDENTIFICATION OF THE CLASS PRYMNESIOPHYCEAE AND THE GENUS PHAEOCYSTIS WITH RIBOSOMAL RNA-TARGETED NUCLEIC ACID PROBES DETECTED BY FLOW CYTOMETRY

Développement d’indicateurs de biodiversité: comparaison des données classiques et moléculaires pour étudier les changements de composition des communautés microbiennes marines

DIVERSITY OF EUKARYOTIC PICOPLANKTON IN COASTAL WATERS

Impact de la température sur les interactions entre la microalgue marine Micromonas et les virus qui l’infectent

Viral infection impacts the 3D subcellular structure of the abundant marine diatom Guinardia delicatula

Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters

PHYTOBS dataset - French National Service of Observation for Phytoplankton in coastal waters

Données génétiques et indicateurs de biodiversité microbienne pélagique

Typologie des habitats marins benthiques de la Manche, de la Mer du Nord et de l'Atlantique VERSION 3