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An evolutionary schema for mining skyline clusters of attributed graph data

Wajdi Dhifli , Noemie Oliveira da Costa , Mohamed Elati
2017 IEEE Congress on Evolutionary Computation (CEC), Jun 2017, Donostia, France. ⟨10.1109/CEC.2017.7969559⟩
Communication dans un congrès hal-01714838v1
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Identification of deregulated transcription factors involved in subtypes of cancers

Magali Champion , Julien Chiquet , Pierre Neuvial , Mohamed Elati , François Radvanyi , et al.
Proceedings of the 12th International Conference on Bioinformatics and Computational Biology, Mar 2020, SAN FRANCISCO, United States. pp.1--10, ⟨10.29007/v7qj⟩
Communication dans un congrès hal-01516892v2

Apprentissage et Graphes pour les Systèmes complexes

Khalid Benabdeslem , Mohamed Elati , Rushed Kanawati , Hamamache Kheddouci , Céline Rouveirol
2009
Autre publication scientifique hal-00384446v1

De la création d’un réseau intégratif spécifique de la polyarthrite rhumatoïde à l’étude d’un modèle personnalisé relié au traitement des patients

Q. Miagoux , V. Singh , D.M. Dereck , V. Chaudru , Mohamed Elati , et al.
Revue du Rhumatisme, 2021, 88, pp.A151. ⟨10.1016/j.rhum.2021.10.238⟩
Article dans une revue hal-04504958v1

Metabolic syndrome, malnutrition, and its associations with cardiovascular and all-cause mortality in hemodialysis patients: Follow-up for three years

Zohra El Ati , Hanene Machfar , Hamza Boussafa , Nidhal Ati , Olfaben Omrane Sioud , et al.
Saudi Journal of Kidney Diseases and Transplantation , 2020, 31 (1), pp.129. ⟨10.4103/1319-2442.279932⟩
Article dans une revue hal-04508913v1
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Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast

Anthony Coutant , Katherine Roper , Daniel Trejo-Banos , Dominique Bouthinon , Martin Carpenter , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (36), pp.18142-18147. ⟨10.1073/pnas.1900548116⟩
Article dans une revue hal-02297702v1
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Identification of functional modules based on transcriptional regulation structure

Etienne Birmele , Mohamed Elati , Céline Rouveirol , Christophe Ambroise
BMC Proceedings, 2008, 2 (4), pp.S4
Article dans une revue hal-00730904v1

Evolutionary optimization of convolutional neural networks for cancer miRNA biomarkers classification

Alejandro Lopez-Rincon , Alberto Tonda , Mohamed Elati , Olivier Schwander , Benjamin Piwowarski , et al.
Applied Soft Computing, 2018, 65, pp.91 - 100. ⟨10.1016/j.asoc.2017.12.036⟩
Article dans une revue hal-01700622v1

Evolutionary mining of skyline clusters of attributed graph data

Wajdi Dhifli , Nour El Islem Karabadji , Mohamed Elati
Information Sciences, 2020, 509, pp.501-514. ⟨10.1016/j.ins.2018.09.053⟩
Article dans une revue hal-04499731v1
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Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica

Pauline Trébulle , Jean-Marc Nicaud , Christophe Leplat , Mohamed Elati
npj Systems Biology and Applications, 2017, 3 (1), ⟨10.1038/s41540-017-0024-1⟩
Article dans une revue hal-01714837v1

P04.18 Heterogeneity and plasticity of integrin α5β1 expression in glioblastoma stem cells

M Messé , C Bernhard , M Mercier , Q Fuchs , S Foppolo , et al.
Neuro-Oncology, 2021, 23 (Supplement_2), pp.ii22-ii22. ⟨10.1093/neuonc/noab180.072⟩
Article dans une revue hal-04499744v1
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Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map

Quentin Miagoux , Vidisha Singh , Dereck de Mézquita , Valérie Chaudru , Mohamed Elati , et al.
Journal of Personalized Medicine, 2021, 11 (8), pp.785. ⟨10.3390/jpm11080785⟩
Article dans une revue hal-03515663v1
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Atelier Grands Graphes et Bioinformatique

Etienne E. Birmelé , Mohamed Elati , Blaise Hanczar , Lydia Boudjeloud-Assala
16e Journées des Connaissances (EGC 2016), Jan 2016, Reims, France. pp.40, 2016
Proceedings/Recueil des communications hal-03122986v1
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A model for gene deregulation detection using expression data

Thomas Picchetti , Julien Chiquet , Mohamed Elati , Pierre Neuvial , Rémy Nicolle , et al.
BMC Systems Biology, 2015, 9, ⟨10.1186/1752-0509-9-S6-S6⟩
Article dans une revue hal-01154154v2
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Integrating transcriptional activity in genome-scale models of metabolism

Daniel Trejo Banos , Pauline Trebulle , Mohamed Elati
16. International Conference on Bioinformatics (InCoB 2017), University of Technology Sydney (UTS). AUS.; Tsinghua University. CHN.; Asia Pacific Bioinformatics Network (APBioNet)., Sep 2017, Shenzhen, China. 174 p., ⟨10.1186/s12918-017-0507-0⟩
Communication dans un congrès hal-02738237v1

Bioinformatics identification of key regulators associated with MUC4 expression in pancreatic adenocarcinoma.

Nicolas Jonckheere , Julie Auwercx , Elsa Hadj Bachir , Lucie Coppin , Audrey Vincent , et al.
Mucins in health and Disease, Jul 2022, Utrecht (Netherland), Netherlands
Poster de conférence hal-04465160v1
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Identification of Deregulated Mechanisms Specific to Bladder Cancer Subtypes

Magali Champion , Julien Chiquet , Pierre Neuvial , Mohamed Elati , François Radvanyi , et al.
Journal of Bioinformatics and Computational Biology, 2021, 19 (1), ⟨10.1142/S0219720021400035⟩
Article dans une revue hal-03079966v1
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Loss of ORP3 induces aneuploidy and promotes bladder cancer cell invasion through deregulated microtubule and actin dynamics

Xue Wang , Junnan Liu , Anca Azoitei , Tim Eiseler , Sabine Meessen , et al.
Cellular and Molecular Life Sciences, 2023, 80 (10), pp.299. ⟨10.1007/s00018-023-04959-6⟩
Article dans une revue hal-04499717v1

LICORN: learning cooperative regulation networks from gene expression data.

Mohamed Elati , Pierre Neuvial , Monique Bolotin-Fukuhara , Emmanuel Barillot , François Radvanyi , et al.
Bioinformatics, 2007, 23 (18), pp.2407-14. ⟨10.1093/bioinformatics/btm352⟩
Article dans une revue hal-00192537v1

Integrating transcriptional activity in genome-scale models of metabolism

Mohamed Elati , Daniel Trejo Banos , Pauline Trébulle
BMC Systems Biology, 2017, 11 (S7), ⟨10.1186/s12918-017-0507-0⟩
Article dans une revue hal-01730100v1

Instance Matching in Knowledge Graphs Through Dynamic, Distributed and Affinity-Preserving Random Walk

Ali Assi , Mohamed Elati , Wajdi Dhifli
IEEE BigData, 2020, pp.892-897. ⟨10.1109/BigData50022.2020.9378323⟩
Article dans une revue hal-04509036v1

Latent network-based representations for large-scale gene expression data analysis

Wajdi Dhifli , Julia Puig , Aurélien Dispot , Mohamed Elati
BMC Bioinformatics, 2019, 19 (S13), pp.466. ⟨10.1186/s12859-018-2481-y⟩
Article dans une revue hal-04509116v1
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Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference

Naouel Zerrouk , Quentin Miagoux , Aurelien Dispot , Mohamed Elati , Anna Niarakis
Scientific Reports, 2020, 10 (1), pp.16236. ⟨10.1038/s41598-020-73147-4⟩
Article dans une revue hal-02958928v1
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Analysis tools for the interplay between genome layout and regulation

Costas Bouyioukos , Mohamed Elati , François Képès
BMC Bioinformatics, 2016, 17 (S5), ⟨10.1186/s12859-016-1047-0⟩
Article dans une revue hal-01714839v1