Mélisande Blein-Nicolas

Documents

Publications

	Physical Contact between Torulaspora delbrueckii and Saccharomyces cerevisiae Alters Cell Growth and Molecular Interactions in Grape Must Laura Chasseriaud , Warren Albertin , Mélisande Blein-Nicolas , Thierry Balliau , Michel Zivy Beverages, 2023, 9 (3), pp.81. ⟨10.3390/beverages9030081⟩ Article dans une revue hal-04233435v1
	Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize Yacine Djabali , Renaud Rincent , Marie-Laure Martin , Mélisande Blein-Nicolas TAG Theoretical and Applied Genetics, 2023, 136 (11), pp.228. ⟨10.1007/s00122-023-04458-z⟩ Article dans une revue hal-04002996v2
	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas Langlade OCL Oilseeds and fats crops and lipids, 2021, 28, ⟨10.1051/ocl/2020074⟩ Article dans une revue hal-03139476v1
	Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis Maria Urrutia , Melisande Blein-Nicolas , Sylvain Prigent , Stéphane Bernillon , Catherine Deborde Plant, Cell and Environment, 2021, 44 (5), pp.1504-1521. ⟨10.1111/pce.13993⟩ Article dans une revue hal-03107184v1
	Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets Ariane Bassignani , Sandra Plancade , Magali Berland , Melisande Blein-Nicolas , Alain Guillot Journal of Proteome Research, 2021, 20 (3), pp.1522-1534. ⟨10.1021/acs.jproteome.0c00669⟩ Article dans une revue hal-03135575v1
	A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩ Article dans une revue hal-03009577v1
	Transcriptomic and proteomic data in developing tomato fruit Isma Belouah , Camille Bénard , Alisandra Denton , Melisande Blein-Nicolas , Thierry Balliau Data in Brief, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩ Article dans une revue hal-02539392v1
	Peptide filtering differently affects the performances of XIC-based quantification methods Isma Belouah , Melisande Blein-Nicolas , Thierry Balliau , Yves Gibon , Michel Zivy Journal of Proteomics, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩ Article dans une revue hal-02327322v1
	Modeling Protein Destiny in Developing Fruit Isma Belouah , Christine Nazaret , Pierre Pétriacq , Sylvain Prigent , Camille Bénard Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩ Article dans une revue hal-02327302v1
	Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome Celine Henry , Lucia Haller , Melisande Blein-Nicolas , Michel Zivy , Alexis Canette Frontiers in Microbiology, 2019, 10, pp.1329. ⟨10.3389/fmicb.2019.01329⟩ Article dans une revue hal-02391885v1
	Evaluation of optimized tube-gel methods of sample preparation for large-scale plant proteomics Thierry Balliau , Melisande Blein-Nicolas , Michel Zivy Proteomes, 2018, 6 (1(6)), ⟨10.3390/proteomes6010006⟩ Article dans une revue hal-01784903v1
	X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification Olivier Langella , Benoît Valot , Thierry Balliau , Mélisande Blein-Nicolas , Ludovic Bonhomme Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩ Article dans une revue hal-01484169v1
	Quantitative proteomics analysis confirmed oxidative metabolism predominates in Streptomyces coelicolor versus glycolytic metabolism in Streptomyces lividans Aaron Millan-Oropeza , Celine Henry , Melisande Blein-Nicolas , Anne Aubert , Fathi Moussa Journal of Proteome Research, 2017, 16 (7), pp.2597-2613. ⟨10.1021/acs.jproteome.7b00163⟩ Article dans une revue hal-01569508v1
	Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics Melisande Blein-Nicolas , Michel Zivy Biochimica et Biophysica Acta Proteins and Proteomics, 2016, 1864 (8), pp.883 - 895. ⟨10.1016/j.bbapap.2016.02.019⟩ Article dans une revue hal-01532597v1
	In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Mathias Lorieux , Mélisande Blein , Jaime Lozano , Mathieu Bouniol , Gaétan Droc Plant Biotechnology Journal, 2012, 10 (5), pp.555-68. ⟨10.1111/j.1467-7652.2012.00689.x⟩ Article dans une revue hal-00821958v1
	Oculimacula yallundae lifestyle revisited: relationships between the timing of eyespot symptom appearance, the development of the pathogen and the responses of infected partially resistant wheat plants M. Blein , A. Levrel , J. Lemoine , V. Gautier , M. Chevalier Plant Pathology, 2009, 58 (1), pp.1-11. ⟨10.1111/j.1365-3059.2008.01940.x⟩ Article dans une revue hal-00730032v1
	A cytomolecular approach to assess the potential of gene transfer from a crop (Triticum turgidum L.) to a wild relative (Aegilops geniculata Roth.) Marta Cifuentes , M. Blein , Elena Benavente TAG Theoretical and Applied Genetics, 2006, 112 (4), pp.657-664. ⟨10.1007/s00122-005-0168-z⟩ Article dans une revue hal-02659651v1

	Proteomics-based systems approach of maize response to water deficit Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas 5th InPPO Conference, May 2023, Thessalonique, Greece Communication dans un congrès hal-04302629v1
	Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution. Willy Vincent Bienvenut , Olivier Langella , Thierry Balliau , Filippo Rusconi , Marlène Davanture ProteoVilamoura, Spanish, French and Portuguese Proteomics Societies, May 2022, VilaMoura, Portugal Communication dans un congrès hal-03815633v1
	Développements pour la protéomique végétale à haut-débit Melisande Blein-Nicolas , Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Communication dans un congrès hal-03878360v1
	Drought response QTLs detected on phenotypic ratios contribute to the genotype x environment interaction. Yacine Djabali , Renaud Rincent , Marie-Laure Martin-Magniette , Melisande Blein-Nicolas XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia Communication dans un congrès hal-03879700v1
	Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques Yacine Djabali , Melisande Blein-Nicolas , Stephane Nicolas Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Communication dans un congrès hal-03878368v1
	Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France Communication dans un congrès hal-03878405v1
	A systems approach of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera AMAIZING Final Conference, Sep 2021, Visioconférence, France Communication dans un congrès hal-03879824v1
	A systems approach of drought response in maize Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France Communication dans un congrès hal-03879809v1
	SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas 4th INPPO Conference, Mar 2021, Visioconférence, France Communication dans un congrès hal-03879763v1
	SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas Journées du Protéome Vert, Jun 2021, Visioconférence, France Communication dans un congrès hal-03879748v1
	A systems approach of drought response in maize Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker Journée SPS-CLAND, Sep 2021, Visioconférence, France Communication dans un congrès hal-03879816v1
	Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower. Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Brigitte Mangin Omics Days, Feb 2020, Montpellier, France Communication dans un congrès hal-03509300v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom Communication dans un congrès hal-03879843v1
	Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Journée SFEAP-SFSM, Apr 2019, Paris, France Communication dans un congrès hal-03879865v1
	Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Adeline Chaubet Green Proteome, Jun 2019, Paris, France Communication dans un congrès hal-03509317v1
	Systems genetics of drought tolerance in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Symposium GisBV, Oct 2019, Paris, France Communication dans un congrès hal-03879857v1
	Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , A Chaubet Plant and Animal Genome XXVII, Jan 2019, San Diego, United States Communication dans un congrès hal-02391988v1
	Approaching absolute quantification using label-free shotgun proteomics coupled with external protein standards spiked in yeast extracts Aaron Millan Oropeza , Melisande Blein-Nicolas , Michel Zivy , Véronique Monnet , Celine Henry SFEAP 2018 Congress, Oct 2018, Albi, France. pp.1 Communication dans un congrès hal-02349950v1
	Peptide filtering differently affects the performances of XIC-based quantifcation methods Melisande Blein-Nicolas , Isma Belouah , Thierry Balliau , Yves Gibon , Michel Zivy Journées Protéome Vert, Apr 2018, Paris, France Communication dans un congrès hal-03879922v1
	Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits. Harold Duruflé , Thierry Balliau , Melisande Blein-Nicolas , Nicolas Blanchet , Adeline Chaubet INPPO World Congress, Sep 2018, Padoue, Italy Communication dans un congrès hal-03509356v1
	GWAS for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker Journées du Protéome Vert, Mar 2017, Paris, France Communication dans un congrès hal-03879954v1
	WAKomics: large-scale functional analysis of the WAK genes involved in the rice/Magnaporthe oryzae interaction A. Delteil , M. Blein , Corinne Michel , Jean-Benoit J.-B. Morel 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France Communication dans un congrès hal-02758451v1
	Exploitation de la collection de mutants riz Génoplante pour l'identification de gènes d'intérêt agronomique Mélisande Blein , Chloé Fallet , Nabila Yahiaoui , Veronique V. Chalvon-Poulier , Corinne Michel Biotechnologies végétales et gestion durable des resistances face à des stress biotiques et abiotiques, Jun 2008, Rennes, France. p. 170 Communication dans un congrès hal-02821581v1

	Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ Olivier Langella , Thierry Balliau , Marlène Davanture , Filippo Rusconi , Melisande Blein-Nicolas ProteoAix 2023 the 3rd Joint Meeting of Spanish, French, and Portuguese Proteomics Societies, Jun 2023, Aix en Provence, France Poster de conférence hal-04103233v1
	Evaluation of the efficiency of the SPEED protein extraction protocol on plant samplesEvaluation of the efficiency of the SPEED protein extraction protocol on plant samples Thierry Balliau , Shabnam Huseynova , Marlène Davanture , Melisande Blein-Nicolas ProteoAix, Jun 2023, Aix-en-Provence, France Poster de conférence hal-04302587v1
	X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer 70th ASMS Conference on Mass Spectrometry and Allied Topics ( ASMS 2022 ), Jun 2022, Minneapolis, United States. Poster de conférence hal-03687564v1
	Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon Analytics 2022, Sep 2022, Nantes, France. Poster de conférence hal-03879730v1
	Open Modification Search using SpecOMS and i2MassChroQ Olivier Langella , Luciana de Oliveira , Michel Zivy , Melisande Blein-Nicolas , Dominique Tessier analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03735820v1
	Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution Willy Vincent Bienvenut , Liam Le Goffic , Olivier Langella , Thierry Balliau , Melisande Blein-Nicolas Analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03773594v1
	i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer Analytics 2022, Sep 2022, Nantes, France Poster de conférence hal-03776788v1
	Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO) Céline Henry , Thierry Balliau , Willy Vincent Bienvenut , Marlène Davanture , Olivier Langella Journées scientifiques Biosphera, Oct 2022, Palaiseau, France Poster de conférence hal-03878417v1
	Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer ProteoVilamoura 2022, May 2022, Vilamoura, Portugal Poster de conférence hal-03687443v1
	Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton 63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States Poster de conférence hal-03368764v1
	Comparaison des méthodes SP3, STrap, Tube-Gel et digestion liquide pour la préparation d'échantillons végétaux Thierry Balliau , Johanna Bruce , Melisande Blein-Nicolas , Michel Zivy SMAP, Sep 2019, Strasbourg, France Poster de conférence hal-03879894v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France. Poster de conférence hal-03879878v1
	Systems genetics of drought-related traits in maize Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet 60th Annual Maize Genetics Conference, Mar 2018, Paris, France Poster de conférence hal-03879934v1
	Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures Maria Urrutia , Melisande Blein-Nicolas , Stéphane Bernillon , Catherine Deborde , Mickaël Maucourt 11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P25, 2018, 11. Journées Scientifiques du RFMF Poster de conférence hal-03125712v1
	Genome wide association study for protein expression under normal and water deficit conditions in maize leaves Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France. Poster de conférence hal-03879943v1
	MassChroQ : A versatile tool for mass spectrometry quantification Edlira Nano , Benoit Valot , Olivier Langella , Ludovic Bonhomme , Mélisande Blein Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France Poster de conférence hal-03663220v1

	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas B. Langlade 2020 Pré-publication, Document de travail hal-02544815v1
	Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet 2019 Pré-publication, Document de travail hal-02788569v1

	DMP du projet "PAPPSO Proteomics facility" Mélisande Blein , Olivier Langella , Filippo Rusconi [0] INRAE. 2021 Rapport hal-03653233v1

Mélisande Blein-Nicolas

Publications

Physical Contact between Torulaspora delbrueckii and Saccharomyces cerevisiae Alters Cell Growth and Molecular Interactions in Grape Must

Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets

A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Transcriptomic and proteomic data in developing tomato fruit

Peptide filtering differently affects the performances of XIC-based quantification methods

Modeling Protein Destiny in Developing Fruit

Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome

Evaluation of optimized tube-gel methods of sample preparation for large-scale plant proteomics

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

Quantitative proteomics analysis confirmed oxidative metabolism predominates in Streptomyces coelicolor versus glycolytic metabolism in Streptomyces lividans

Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics

In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.

Oculimacula yallundae lifestyle revisited: relationships between the timing of eyespot symptom appearance, the development of the pathogen and the responses of infected partially resistant wheat plants

A cytomolecular approach to assess the potential of gene transfer from a crop (Triticum turgidum L.) to a wild relative (Aegilops geniculata Roth.)

Proteomics-based systems approach of maize response to water deficit

Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution.

Développements pour la protéomique végétale à haut-débit

Drought response QTLs detected on phenotypic ratios contribute to the genotype x environment interaction.

Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

A systems approach of drought tolerance in maize

A systems approach of drought response in maize

SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification

SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism

A systems approach of drought response in maize

Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower.

Systems genetics of drought-related traits in maize

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit

Systems genetics of drought tolerance in maize

Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower

Approaching absolute quantification using label-free shotgun proteomics coupled with external protein standards spiked in yeast extracts

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits.

GWAS for protein expression under normal and water deficit conditions in maize leaves

WAKomics: large-scale functional analysis of the WAK genes involved in the rice/Magnaporthe oryzae interaction

Exploitation de la collection de mutants riz Génoplante pour l'identification de gènes d'intérêt agronomique

Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ

Evaluation of the efficiency of the SPEED protein extraction protocol on plant samplesEvaluation of the efficiency of the SPEED protein extraction protocol on plant samples

X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Open Modification Search using SpecOMS and i2MassChroQ

Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution

i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO)

Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Comparaison des méthodes SP3, STrap, Tube-Gel et digestion liquide pour la préparation d'échantillons végétaux

Systems genetics of drought-related traits in maize

Systems genetics of drought-related traits in maize

Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures

Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

MassChroQ : A versatile tool for mass spectrometry quantification

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

DMP du projet "PAPPSO Proteomics facility"