Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations
Seyed Ziaeddin Alborzi
,
Sabeur Aridhi
,
Marie-Dominique Devignes
,
Rabie Saidi
,
Alexandre Renaux
,
et al.
Function-SIG ISMB/ECCB 2017 , biofunctionprediction.org, Jul 2017, Prague, Czech Republic
Communication dans un congrès
hal-01573070v1
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PPI DomainMiner: predicting domain-domain interactions from protein-protein interactions using tripartite graph modeling and vector similarity
Seyed Ziaeddin Alborzi
,
Sabeur Aridhi
,
Dave Ritchie
,
Marie-Dominique Devignes
ECCB 2018 - 17th European Conference on Computational Biology , Sep 2018, Athènes, Greece
Poster de conférence
hal-01877112v1
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Classification et interrogation de sources de données biologiques
Nizar Messai
,
Marie-Dominique Devignes
,
Amedeo Napoli
,
Malika Smaïl-Tabbone
Revue des Nouvelles Technologies de l'Information , 2005, Extraction des connaissances : Etat et perspectives, pp.43-47
Article dans une revue
inria-00103937v1
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A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening
Léo Ghemtio
,
Malika Smail-Tabbone
,
Marie-Dominique Devignes
,
Michel Souchet
,
Bernard Maigret
KDIR - International Conference on Knowledge Discovery and Information Retrieval , Oct 2009, Madeira, Portugal
Communication dans un congrès
inria-00433475v1
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Detailed transcript map of a 810-kb region at 11p14 involving identification of 10 novel human 3' exons
Fabrice Guillemot
,
Charles Auffray
,
Marie-Dominique Devignes
European Journal of Human Genetics , 1999, 7 (4), pp.487-495
Article dans une revue
inria-00098891v1
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability
Gabin Personeni
,
Simon Daget
,
Céline Bonnet
,
Philippe Jonveaux
,
Marie-Dominique Devignes
,
et al.
Data Integration in the Life Sciences - 10th International Conference, DILS 2014 , Jul 2014, Lisbon, Portugal. pp.16 - 31,
⟨10.1007/978-3-319-08590-6_2⟩
Communication dans un congrès
hal-01095591v1
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A data science approach for exploring differential expression profiles of genes in transcriptomic studies-Application to the understanding of ageing in obese and lean rats in the FIGHT-HF project
Emmanuel Bresso
,
Claire Lacomblez
,
Anne Pizard
,
Patrick Rossignol
,
Faiez Zannad
,
et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2018, Marseille, France
Poster de conférence
hal-01928421v1
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies
Gabin Personeni
,
Marie-Dominique Devignes
,
Michel Dumontier
,
Malika Smaïl-Tabbone
,
Adrien Coulet
Deuxième Atelier sur l'Intelligence Artificielle et la Santé , Jun 2016, Montpellier, France
Communication dans un congrès
hal-01391172v1
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Explaining Multicriteria Decision Making with Formal Concept Analysis
Alexandre Bazin
,
Miguel Couceiro
,
Marie-Dominique Devignes
,
Amedeo Napoli
Concept Lattices and Applications 2020 , Jun 2020, Tallinn, Estonia
Communication dans un congrès
hal-02909383v2
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Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ERα36-mediated mechanism
Clémence Chamard-Jovenin
,
Amand Chesnel
,
Chloé Morel
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
et al.
2nd French Workshop on Endocrine disruption in wildlife and human health , Jan 2016, Paris, France
Communication dans un congrès
hal-01320688v1
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Improving automatic GO annotation with semantic similarity
Bishnu Sarker
,
Navya Khare
,
Marie-Dominique Devignes
,
Sabeur Aridhi
Article dans une revue
hal-03915205v1
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BR-Explorer: An FCA-based algorithm for Information Retrieval
Nizar Messai
,
Marie-Dominique Devignes
,
Amedeo Napoli
,
Malika Smaïl-Tabbone
Fourth International Conference On Concept Lattices and Their Applications - CLA 2006 , Oct 2006, Hammamet/Tunisia
Communication dans un congrès
inria-00103913v1
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BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)
Nizar Messai
,
Marie-Dominique Devignes
,
Amedeo Napoli
,
Malika Smaïl-Tabbone
4th International Conference on Formal Concept Analysis - ICFCA 2006 , Feb 2006, Dresden/Germany
Communication dans un congrès
inria-00103947v1
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Collecte et intégration de données biologiques hétérogènes sur le web : application dans le domaine de la cartographie du génome humain
Marie-Dominique Devignes
,
André Schaaff
,
Malika Smaïl
Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information , 2002, 7 (1-2), pp.45-61
Article dans une revue
inria-00100799v1
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Benchmarking a new semantic similarity measure using fuzzy clustering and reference sets: Application to cancer expression data
Sidahmed Benabderrahmane
,
Marie-Dominique Devignes
,
Malika Smail-Tabbone
,
Olivier Poch
,
Amedeo Napoli
,
et al.
11ème Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances - EGC 2011 , Jan 2011, Brest, France
Communication dans un congrès
inria-00617692v1
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Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.
Sidahmed Benabderrahmane
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
O. Poch
,
Amedeo Napoli
,
et al.
Actes du XXVIIième congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2009 , IRIT-Toulouse, May 2009, Toulouse, France. pp.413-428
Communication dans un congrès
inria-00394530v1
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Experiences with a training DSW knowledge model for early-stage researchers
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
Hrishikesh Dhondge
,
Roswitha Dolcemascolo
,
Jose Gavaldá-García
,
et al.
Article dans une revue
hal-04234402v1
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Inconsistencies between maps of human chromosome 22 correlate with increased frequency of disease-related Loci
Claude Chelala
,
Marie-Dominique Devignes
,
Sandrine Imbeaud
,
Rima Zoorob
,
David Cox
,
et al.
Article dans une revue
inria-00000241v1
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Steps Towards Causal Formal Concept Analysis
Alexandre Bazin
,
Miguel Couceiro
,
Marie-Dominique Devignes
,
Amedeo Napoli
Article dans une revue
hal-03183755v2
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A Hybrid Approach to Identifying the Most Predictive and Discriminant Features in Supervised Classification Problems
Alexandre Bazin
,
Miguel Couceiro
,
Marie-Dominique Devignes
,
Amedeo Napoli
Communication dans un congrès
hal-03173406v2
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Associating Gene Ontology Terms with Pfam Protein Domains
Seyed Ziaeddin Alborzi
,
Marie-Dominique Devignes
,
David Ritchie
5th International Work-Conference on Bioinformatics and Biomedical Engineering - IWBBIO 2017 , Apr 2017, Granada, Spain. pp.127-138,
⟨10.1007/978-3-319-56154-7_13⟩
Communication dans un congrès
hal-01531204v1
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ILP for Mining Linked Open Data: a biomedical Case Study
Gabin Personeni
,
Simon Daget
,
Céline Bonnet
,
Philippe Jonveaux
,
Marie-Dominique Devignes
,
et al.
The 24th International Conference on Inductive Logic Programming (ILP 2014) , Sep 2014, Nancy, France
Communication dans un congrès
hal-01095597v1
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Can Plant RNA Viruses Exchange Genetic Material?
Jean-Christophe Boyer
,
Marie-Dominique Morch
,
Anne-Lise Haenni
Chapitre d'ouvrage
hal-02911066v1
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Characterization of the ICESt3 relaxase active site indicates evolutionary relationship between MOBT relaxases and rolling circle replication proteins of the Rep-trans family.
Nicolas Soler
,
Philippe Monteiro
,
Emilie Robert
,
Marie-Dominique Devignes
,
Bernard Maigret
,
et al.
Type IV Secretion in Gram-Negative and Gram-Positive Bacteria conference , Dec 2016, Beilngries, Germany
Communication dans un congrès
hal-02974522v1
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Reduced structural flexibility of eplet amino acids in HLA proteins
Diego Amaya-Ramirez
,
Romain Lhotte
,
Magali Devriese
,
Constantin Hays
,
Jean-Luc Taupin
,
et al.
ECCB 2022 21st European Conference on Computational Biology Planetary Health and Biodiversity , Sep 2022, Barcelona, Spain
Poster de conférence
hal-03924018v1
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Bioprofiles and mechanistic pathways associated with Cheyne-Stokes respiration: insights from the SERVE-HF trial
Joao Pedro Ferreira
,
Kévin Duarte
,
Holger Woehrle
,
Martin Cowie
,
Christiane Angermann
,
et al.
Article dans une revue
hal-02513627v1
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Spatial clustering of protein binding sites for template based protein docking
Anisah Ghoorah
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
David Ritchie
Article dans une revue
inria-00617921v1
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Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism
Clémence Chamard
,
Emmanuel Bresso
,
Taha Boukhobza
,
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
et al.
Communication dans un congrès
hal-01095429v1
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New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration
Chloé C. Ambroset
,
Charles Coluzzi
,
Gérard Guédon
,
Marie-Dominique Devignes
,
Valentin Loux
,
et al.
Article dans une revue
hal-01262284v1
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HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database
Leo Ghemtio
,
Malika Smaïl-Tabbone
,
Appolinaire Djikeng
,
Marie-Dominique Devignes
,
Lionel Keminse
,
et al.
Article dans une revue
hal-00642539v1
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