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Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations

 Seyed Ziaeddin Alborzi , Sabeur Aridhi , Marie-Dominique Devignes , Rabie Saidi , Alexandre Renaux , et al.
Function-SIG ISMB/ECCB 2017, biofunctionprediction.org, Jul 2017, Prague, Czech Republic
Communication dans un congrès hal-01573070v1

PPI DomainMiner: predicting domain-domain interactions from protein-protein interactions using tripartite graph modeling and vector similarity

 Seyed Ziaeddin Alborzi , Sabeur Aridhi , Dave Ritchie , Marie-Dominique Devignes
ECCB 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece
Poster de conférence hal-01877112v1
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Classification et interrogation de sources de données biologiques

 Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
Revue des Nouvelles Technologies de l'Information, 2005, Extraction des connaissances : Etat et perspectives, pp.43-47
Article dans une revue inria-00103937v1

A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening

 Léo Ghemtio , Malika Smail-Tabbone , Marie-Dominique Devignes , Michel Souchet , Bernard Maigret
KDIR - International Conference on Knowledge Discovery and Information Retrieval, Oct 2009, Madeira, Portugal
Communication dans un congrès inria-00433475v1

Detailed transcript map of a 810-kb region at 11p14 involving identification of 10 novel human 3' exons

 Fabrice Guillemot , Charles Auffray , Marie-Dominique Devignes
European Journal of Human Genetics, 1999, 7 (4), pp.487-495
Article dans une revue inria-00098891v1
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability

 Gabin Personeni , Simon Daget , Céline Bonnet , Philippe Jonveaux , Marie-Dominique Devignes , et al.
Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩
Communication dans un congrès hal-01095591v1
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A data science approach for exploring differential expression profiles of genes in transcriptomic studies-Application to the understanding of ageing in obese and lean rats in the FIGHT-HF project

 Emmanuel Bresso , Claire Lacomblez , Anne Pizard , Patrick Rossignol , Faiez Zannad , et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Poster de conférence hal-01928421v1
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies

 Gabin Personeni , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone , Adrien Coulet
Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
Communication dans un congrès hal-01391172v1
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Explaining Multicriteria Decision Making with Formal Concept Analysis

 Alexandre Bazin , Miguel Couceiro , Marie-Dominique Devignes , Amedeo Napoli
Concept Lattices and Applications 2020, Jun 2020, Tallinn, Estonia
Communication dans un congrès hal-02909383v2

Improving automatic GO annotation with semantic similarity

 Bishnu Sarker , Navya Khare , Marie-Dominique Devignes , Sabeur Aridhi
BMC Bioinformatics, 2022, 23 (S2), pp.433. ⟨10.1186/s12859-022-04958-7⟩
Article dans une revue hal-03915205v1

Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ERα36-mediated mechanism

 Clémence Chamard-Jovenin , Amand Chesnel , Chloé Morel , Marie-Dominique Devignes , Malika Smaïl-Tabbone , et al.
2nd French Workshop on Endocrine disruption in wildlife and human health, Jan 2016, Paris, France
Communication dans un congrès hal-01320688v1

HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database

 Leo Ghemtio , Malika Smaïl-Tabbone , Appolinaire Djikeng , Marie-Dominique Devignes , Lionel Keminse , et al.
Journal of Health & Medical Informatics, 2011, 2 (1), pp.1000104. ⟨10.4172/2157-7420.1000104⟩
Article dans une revue hal-00642539v1
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Discovering ADE associations from EHRs using pattern structures and ontologies

 Gabin Personeni , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone , Adrien Coulet
Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States
Communication dans un congrès hal-01369448v1
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Plasma protein biomarkers and their association with mutually exclusive cardiovascular phenotypes: the FIBRO‑TARGETS case–control analyses

 Joao Pedro Ferreira , Anne Pizard , Jean-Loup Machu , Emmanuel Bresso , Hans-Peter Brunner-Larocca , et al.
Clinical Research in Cardiology, 2020, 109 (1), pp.22-33. ⟨10.1007/s00392-019-01480-4⟩
Article dans une revue hal-02138814v1
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Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations

 Seyed Ziaeddin Alborzi , Marie-Dominique Devignes , Sabeur Aridhi , Rabie Saidi , Alexandre Renaux , et al.
Function-SIG ISMB/ECCB 2017, Jul 2017, Prague, Czech Republic. 2017
Poster de conférence hal-01573079v1
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Application of Artificial Intelligence to Gastroenterology and Hepatology

 Catherine Le Berre , William J. Sandborn , Sabeur Aridhi , Marie-Dominique Devignes , Laure Fournier , et al.
Gastroenterology, 2020, 158 (1), pp.76-94.e2. ⟨10.1053/j.gastro.2019.08.058⟩
Article dans une revue hal-02393130v1

A glimpse into an unexplored world: very high diversity of integrative and mobilizable elements in Streptococci

 Charles Coluzzi , Gérard Guédon , Chloé Ambroset , Marie-Dominique Devignes , Sophie Payot , et al.
8th ASM conference on Streptococcal Genetics, Jul 2016, Washington, United States
Poster de conférence hal-02974398v1
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FAIR-Checker : Checking and Inspecting metadata for FAIR bioinformatics resources

 Thomas Rosnet , F de Lamotte , Marie-Dominique Devignes , Vincent Lefort , A Gaignard
Elixir AllHands 2022, Jun 2022, Amsterdam, Netherlands
Poster de conférence hal-03807367v1

KBDOCK 2013: A spatial classification of 3D protein domain family interactions

 Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Nucleic Acids Research, 2014, 42 (D1), pp.389-395. ⟨10.1093/nar/gkt1199⟩
Article dans une revue hal-00920612v1
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Low-dose alkylphenol exposure promotes mammary epithelium alterations and transgenerational developmental defects, but does not enhance tumorigenic behaviour of breast cancer cells

 Clémence Chamard-Jovenin , Charlène Thiébaut , Amand Chesnel , Emmanuel Bresso , Chloé Morel , et al.
Frontiers in Endocrinology, 2017, 8, pp.272. ⟨10.3389/fendo.2017.00272⟩
Article dans une revue hal-01609240v1

Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ER36-mediated mechanism

 Clémence Chamard-Jovenin , Amand Chesnel , Chloé Morel , Emmanuel Bresso , Marie-Dominique Devignes , et al.
4ème Colloque Inter-Régional Grand-Est de Recherche Translationnelle en Oncologie, Oncotrans 2015, Jun 2015, Dijon, France
Communication dans un congrès hal-01320699v1
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HexServer: an FFT-based protein docking server powered by graphics processors

 Gary Macindoe , Lazaros Mavridis , Vishwesh Venkatraman , Marie-Dominique Devignes , David Ritchie
Nucleic Acids Research, 2010, 38, pp.W445-W449. ⟨10.1093/nar/gkq311⟩
Article dans une revue inria-00522712v1
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CroMaSt: A workflow for domain family curation through cross-mapping of structural instances between protein domain databases

 Hrishikesh Dhondge , Isaure Chauvot de Beauchêne , Marie-Dominique Devignes
ECCB2022- 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain. ⟨10.48546/WORKFLOWHUB.WORKFLOW.390.1⟩
Poster de conférence hal-03789541v1
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Immunoselection and characterization of a human genomic PPAR binding fragment located within POTE genes

 Hossam Murad , Philippe Collet , Emilie Brunner , Hervé Schohn , Philippe Becuwe , et al.
Biochimie, 2006, ⟨10.1016/j.biochi.2006.09.017⟩
Article dans une revue inria-00103844v1

PGxCorpus, a manually annotated corpus for pharmacogenomics

 Joël Legrand , Romain Gogdemir , Cedric Bousquet , Kevin Dalleau , Marie-Dominique Devignes , et al.
Scientific Data , 2020, 7, pp.3. ⟨10.1038/s41597-019-0342-9⟩
Article dans une revue hal-02547607v1

Plant viruses and new perspectives in cross-protection

 Rosaura P.C. Valle , Jacek Skrzeczkowski , Marie-Dominique Morch , Rajiv L Joshi , Radhia Gargouri , et al.
Biochimie, 1988, 70 (5), pp.695-703. ⟨10.1016/0300-9084(88)90255-6⟩
Article dans une revue istex hal-02911646v1
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BR-Explorer: An FCA-based algorithm for Information Retrieval

 Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
Fourth International Conference On Concept Lattices and Their Applications - CLA 2006, Oct 2006, Hammamet/Tunisia
Communication dans un congrès inria-00103913v1
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BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)

 Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
4th International Conference on Formal Concept Analysis - ICFCA 2006, Feb 2006, Dresden/Germany
Communication dans un congrès inria-00103947v1

Collecte et intégration de données biologiques hétérogènes sur le web : application dans le domaine de la cartographie du génome humain

 Marie-Dominique Devignes , André Schaaff , Malika Smaïl
Revue des Sciences et Technologies de l'Information - Série ISI : Ingénierie des Systèmes d'Information, 2002, 7 (1-2), pp.45-61
Article dans une revue inria-00100799v1
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Benchmarking a new semantic similarity measure using fuzzy clustering and reference sets: Application to cancer expression data

 Sidahmed Benabderrahmane , Marie-Dominique Devignes , Malika Smail-Tabbone , Olivier Poch , Amedeo Napoli , et al.
11ème Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances - EGC 2011, Jan 2011, Brest, France
Communication dans un congrès inria-00617692v1
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