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Whole-genome sequencing confirms the coexistence of different colonizing Group B Streptococcus isolates underscored by CRISPR typing

 Clémence Beauruelle , Maxime Branger , Thierry Cochard , Adeline Pastuszka , Franck Biet , et al.
Microbiology Resource Announcements, 2020, 9 (5), 3 p. ⟨10.1128/MRA.01359-19⟩
Article dans une revue hal-02624834v1
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Engineering Synthetic Lipopeptide Antigen for Specific Detection of Mycobacterium avium subsp. paratuberculosis Infection

 Sylvie Bay , Douglas Begg , Christelle Ganneau , Maxime Branger , Thierry Cochard , et al.
Frontiers in Veterinary Science, 2021, 8, 10 p. ⟨10.3389/fvets.2021.637841⟩
Article dans une revue hal-03228018v1

Tuberculose bovine en France : évolution des souches de Mycobacterium bovis étudiée par approche génomique

 Lorraine Michelet , Amandine Hauer , Maxime Branger , Claudine Karoui , Thierry Cochard , et al.
Journées d'Animation Scientifique du Département Santé Animale, Oct 2018, Nantes, France. , 2018, Santé Animale et Santé Publique
Poster de conférence hal-02737780v1

The complete genome sequence of Mycobacterium bovis Mb3601, a SB0120 spoligotype strain representative of a new clonal group

 Maxime Branger , Valentin Loux , Thierry Cochard , Maria Laura Boschiroli , Franck Biet , et al.
Infection, Genetics and Evolution, 2020, 82, 4 p. ⟨10.1016/j.meegid.2020.104309⟩
Article dans une revue hal-02905303v1
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Immunological analysis of 35 recombinant antigens of M. avium subsp paratuberculosis in mice and cattle

 Virginie Roupie , Sébastien Holbert , S. Viart , Christophe Tholoniat , B. Leroy , et al.
13. International Colloquium on Paratuberculosis (ICP 2016), International Association for Paratuberculosis. INT., Jun 2016, Nantes, France. 159 p
Communication dans un congrès hal-02743619v1

Genetic features of strains of Mycobacterium avium subsp. paratuberculosis circulating in the West of France deciphered by Whole-Genome Sequencing

 Cyril Condé , Thierry Cochard , Maxime Branger , Marie-Noëlle Rossignol , Christine Fourichon , et al.
16. Congrès national de la SFM - Microbes 2021, Sep 2021, Nantes, France. , OM-P04
Poster de conférence hal-03473049v1
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Lipopolysaccharide core type diversity in the Escherichia coli species in association with phylogeny, virulence gene repertoire and distribution of type VI secretion systems

 Sébastien Leclercq , Maxime Branger , David G E Smith , Pierre Germon
Microbial Genomics, 2021, 7, 13 p. ⟨10.1099/mgen.0.000652⟩
Article dans une revue hal-03367242v1

Cell wall lipopeptides of Mycobacterium avium: new insights from genomics analysis

 John P. Bannantine , Gilles Etienne , Françoise Laval , Anne Lemassu , Mamadou Daffé , et al.
Journées d'Animation Scientifique du Département Santé Animale, May 2016, Chasseneuil-du-Poitou, France. , 98 p., 2016, Santé animale et santé publique
Poster de conférence hal-02743652v1

[i]In silico[/i] epitope analysis of unique and membrane associated proteins from [i]Mycobacterium avium[/i] subsp. [i]paratuberculosis[/i] for immunogenicity and vaccine evaluation

 Perla Carlos , Virginie Roupie , Sébastien Holbert , Felipe Ascencio , Kris Huygen , et al.
Journal of Theoretical Biology, 2015, 384, pp.1-9. ⟨10.1016/j.jtbi.2015.08.003⟩
Article dans une revue hal-01186413v1
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Genetic Diversity Among Mycobacterium avium Subspecies Revealed by Analysis of Complete Genome Sequences

 John P Bannantine , Cyril Conde , Darrell O Bayles , Maxime Branger , Franck Biet
Frontiers in Microbiology, 2020, 11, 18 p. ⟨10.3389/fmicb.2020.01701⟩
Article dans une revue hal-02952857v1

Whole-Genome Sequencing of Mycobacterium avium subsp. paratuberculosis: application for in silico IS900-analysis

 Cyril Condé , Maxime Branger , Thierry Cochard , Karen Stevenson , Franck Biet
15. Congrès National de la Société Française de Microbiologie (SFM), Sep 2019, Paris, France. , pp.436, 2019, Microbes - 15e congrès national de la SFM
Poster de conférence hal-02737025v1

Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900 distribution reveals strain type-specific modalities

 Cyril Conde , Marian Price-Carter , Thierry Cochard , Maxime Branger , Karen Stevenson , et al.
15th International Association for Paratuberculous - ICP 2022, Université de Dublin, Jun 2022, Dublin, Ireland
Communication dans un congrès hal-04203719v1
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GenoFig: A user-friendly application for the vizualisation and comparison of genomic regions

 Maxime Branger , Sébastien Leclercq
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2023, Jun 2023, Tours, France. , 2023, JOBIM 2023 Proceedings
Poster de conférence hal-04170376v1
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MIRU-VNTR allelic variability depends on Mycobacterium bovis clonal group identity

 Amandine Hauer , Lorraine Michelet , Krystel de Cruz , Thierry Cochard , Maxime Branger , et al.
Infection, Genetics and Evolution, 2016, 45, pp.165-169. ⟨10.1016/j.meegid.2016.08.038⟩
Article dans une revue hal-01595184v1

EV0142 From whole genome sequencing data toward a simple genotyping tool: application to the animal pathogen Mycobacterium bovis

 Lorraine Michelet , Amandine Hauer , Thierry Cochard , Maxime Branger , Franck Biet , et al.
26. European Congress of Clinical Microbiology and Infectious Diseases (ECCMID 2016), Apr 2016, Amsterdam, Netherlands. , 2016
Poster de conférence hal-02742301v1
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Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900 Insertions Reveals Strain Type-Specific Modalities

 Cyril Condé , Marian Price-Carter , Thierry Cochard , Maxime Branger , Karen Stevenson , et al.
Frontiers in Microbiology, 2021, 12, 12 p. ⟨10.3389/fmicb.2021.660002⟩
Article dans une revue hal-03244285v1
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GenoFig: a user-friendly application for vizualisation and comparison of genomic regions

 Maxime Branger , Sébastien Leclercq
9. Symposium on Antimicrobial Resistance in Animals and the Environment - ARAE, Jul 2023, Tours (France), France. 2023, Abstracts book - 9. Symposium on Antimicrobial Resistance in Animals and the Environment - ARAE
Poster de conférence hal-04170283v1

Construction and characterization of saturated Tn-seq libraries for two serovars of Salmonella : Salmonella Typhimurium and Salmonella Enteritidis

 Jérôme Trotereau , Jouan Romain , Delphine Naquin , Maxime Branger , Philippe Velge , et al.
International Symposirum Salmonella and Salmonellosis (I3S) - 2022, Jun 2022, Saint-Malo, France
Poster de conférence hal-03731993v1
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MAC-INMV-plus : a web application dedicated to genotyping of Mycobacterium avium subsp. paratuberculosis strains and other MAC members

 Thierry Cochard , Maxime Branger , Virginie Thibault , Philip Supply , Srinand Sreevatsan , et al.
13. International Colloquium on Paratuberculosis (ICP 2016), Jun 2016, Nantes, France. , 82 p., 2016
Poster de conférence hal-02740412v1

A web tool for analysis the genotyping of mycobacterium avium subsp. paratuberculosis strains and other mac members

 Thierry Cochard , Maxime Branger , Virginie Thibault , Philip Supply , Franck Biet
12. International Colloquium on Paratuberculosis, Jun 2014, Parme, Italy. 234 p., 2014
Poster de conférence hal-02743915v1

Diversité génétique des souches françaises de M. bovis d’origine animale: contribution du WGS

 Lorraine Michelet , Maxime Branger , Thierry Cochard , Krystel de Cruz , Claudine Karoui , et al.
5. Conférence du MycoClub ( Mycobactéries 2017), May 2017, Montigny le Bretonneux, France. 2017
Poster de conférence hal-02734618v1

Accurate phylogenetic relationships between mains French Mycobacterium bovis genotype based on whole genome sequencing and single nucleotide polymorphism

 Amandine Hauer , Thierry Cochard , Maxime Branger , Maria-Laura Boschiroli , Franck Biet
4. Conférence du MycoClub, May 2015, Marseille, France. 2015
Poster de conférence hal-02796167v1
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Cell Wall lipopeptides of Mycobacterium avium: New insights from genomics analysis

 John P. Bannantine , Gilles Etienne , Françoise Laval , Anne Lemassu , Mamadou Daffé , et al.
13. International Colloquium on Paratuberculosis (ICP 2016), International Association for Paratuberculosis. INT., Jun 2016, Nantes, France. 159 p
Communication dans un congrès hal-02744375v1

Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900 distribution reveals strain typespecific modalities

 Cyril Condé , Marian Price-Carter , Thierry Cochard , Maxime Branger , Karen Stevenson , et al.
16. Congrès national de la SFM - Microbes 2021, Sep 2021, Nantes, France. , OM-P05
Poster de conférence hal-03473090v1
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Feature of adhesins produced by human clinical isolates of mycobacterium intracellulare, mycobacterium intracellulare subsp. chimaera and closely related species

 Louise H. Lefrancois , Thierry Cochard , Maxime Branger , Olivia Peuchant , Cyril Conde , et al.
Microorganisms, 2020, 8 (8), pp.1154. ⟨10.3390/microorganisms8081154⟩
Article dans une revue hal-02949453v1
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Draft genome sequences of 142 Mycobacterium avium subsp. paratuberculosis strains isolated from naturally infected dairy cattle

 Cyril Conde , Maxime Branger , Thierry Cochard , Marie-Noëlle Rossignol , Christine Fourichon , et al.
Microbiology Resource Announcements, 2021, 10 (38), 5 p. ⟨10.1128/mra.00697-21⟩
Article dans une revue hal-03388033v1
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Draft genome sequences of three mycobacterium bovis strains identified in cattle and wildlife in France

 Maxime Branger , Amandine Hauer , Lorraine Michelet , Claudine Karoui , Thierry Cochard , et al.
Genome Announcements, 2017, 5 (27), 2 p. ⟨10.1128/genomeA.00410-17⟩
Article dans une revue hal-01605160v1

Draft Genome Sequence of Mycobacterium bovis Strain D-10-02315 Isolated from Wild Boar

 Maxime Branger , Amandine Hauer , Lorraine Michelet , Claudine Karoui , Thierry Cochard , et al.
Genome Announcements, 2016, 4 (6), pp.1-2. ⟨10.1128/genomeA.01268-16⟩
Article dans une revue hal-01594496v1

Cell wall lipopeptides as markers of evolution within Mycabacterium subsp. paratuberculosis: a genomic approach

 John P. Bannantine , Gilles Etienne , Françoise Laval , Anne Lemassu , Mamadou Daffé , et al.
2. NTM European Conference, Société Française de Microbiologie (SFM). FRA., Jun 2018, Montigny-le-Bretonneux, France
Communication dans un congrès hal-02735909v1

Rôle des amibes dans la transmission des infections mycobactériennes chez les ruminants ?

 Ascel Samba-Louaka , Etienne Robino , Thierry Cochard , Maxime Branger , Vincent Delafont , et al.
Journées d'Animation Scientifique du Département Santé Animale, Oct 2018, Nantes, France. , 2018, Santé Animale et Santé Publique
Poster de conférence hal-02735417v1
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