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Differentiation of vegetative cells into spores: a kinetic model applied to bacillus subtilis

 Emilie Gauvry , Anne-Gabrielle Mathot , Olivier Couvert , Ivan Leguerinel , Matthieu M. Jules , et al.
Applied and Environmental Microbiology, 2019, 85 (10), pp.1-13. ⟨10.1128/AEM.00322-19⟩
Article dans une revue hal-02617842v1

BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array

 Leslie Aïchaoui , Matthieu Jules , Ludovic Le Chat , Stephane Aymerich , Vincent Fromion , et al.
Bioinformatics, 2012, 28 (20), pp.2705-2706. ⟨10.1093/bioinformatics/bts422⟩
Article dans une revue hal-01204252v1

Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila

 Holger Brüggemann , Arne Hagman , Matthieu Jules , Odile Sismeiro , Marie-Agnès Dillies , et al.
Cellular Microbiology, 2006, 8 (8), pp.1228-1240. ⟨10.1111/j.1462-5822.2006.00703.x⟩
Article dans une revue hal-02661574v1
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Isotopologue profiling of Legionella pneumophila: role of serine and glucose as carbon substrates.

 Eva Eylert , Vroni Herrmann , Matthieu Jules , Nadine Gillmaier , Monika Lautner , et al.
Journal of Biological Chemistry, 2010, 285 (29), pp.22232-22243. ⟨10.1074/jbc.M110.128678⟩
Article dans une revue hal-02661810v1

GamA is a eukaryotic-like glucoamylase responsible for glycogen- and starch-degrading activity of Legionella pneumophila

 Vroni Herrmann , Anja Eidner , Kerstin Rydzewski , Inga Blädel , Matthieu Jules , et al.
International Journal of Medical Microbiology, 2011, 301 (2), pp.133-139. ⟨10.1016/j.ijmm.2010.08.016⟩
Article dans une revue istex hal-02647334v1

Combining Fusion of Cells with CRISPR-Cas9 Editing for the Cloning of Large DNA Fragments or Complete Bacterial Genomes in Yeast

 Gabrielle Guesdon , Géraldine Gourgues , Fabien Rideau , Thomas Ipoutcha , Lucía Manso-Silván , et al.
ACS Synthetic Biology, 2023, 12 (11), pp.3252-3266. ⟨10.1021/acssynbio.3c00248⟩
Article dans une revue hal-04522926v1
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A part toolbox to tune genetic expression in Bacillus subtilis

 Sarah Guiziou , Vincent Sauveplane , Hung-Ju Chang , Caroline Clerté , Nathalie Declerck , et al.
Nucleic Acids Research, 2016, 44 (15), pp.7495-7508. ⟨10.1093/nar/gkw624⟩
Article dans une revue hal-02639876v1
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Metabolic fluxes during strong carbon catabolite repression by malate in Bacillus subtilis

 Roelco J. Kleijn , Joerg M. Buescher , Ludovic L. Le Chat , Matthieu Jules , Stephane S. Aymerich , et al.
Journal of Biological Chemistry, 2010, 285 (3), pp.1587-1596. ⟨10.1074/jbc.M109.061747⟩
Article dans une revue hal-02663413v1
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Greedy reduction of Bacillus subtilis genome yields emergent phenotypes of high resistance to a DNA damaging agent and low evolvability

 Etienne Dervyn , Anne-Gaëlle Planson , Kosei Tanaka , Victor Chubukov , Cyprien Guérin , et al.
Nucleic Acids Research, 2023, 51 (6), pp.2974-2992. ⟨10.1093/nar/gkad145⟩
Article dans une revue hal-04094194v1

Quantitative prediction of genome-wide resource allocation in bacteria

 Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel , et al.
Metabolic Engineering, 2015, 32, pp.232-243. ⟨10.1016/j.ymben.2015.10.003⟩
Article dans une revue hal-01536511v1
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Nicotinic acid modulates Legionella pneumophila gene expression and induces virulence traits.

 Rachel L Edwards , Andrew Bryan , Matthieu Jules , Kaoru Harada , Carmen Buchrieser , et al.
Infection and Immunity, 2013, 81 (3), pp.945-55. ⟨10.1128/IAI.00999-12⟩
Article dans une revue pasteur-01422856v1

pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis

 Eric Botella , Mark Fogg , Matthieu Jules , Sjouke Piersma , Geoff Doherty , et al.
Microbiology, 2010, 156 (Pt 6), pp.1600-1608. ⟨10.1099/mic.0.035758-0⟩
Article dans une revue hal-02663195v1
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The Bacillus subtilis ywjI (glpX) gene encodes a class II fructose-1,6-bisphosphatase, functionally equivalent to the class III Fbp enzyme

 Matthieu Jules , Ludovic L. Le Chat , Stephane S. Aymerich , Dominique D. Le Coq
Journal of Bacteriology, 2009, 191 (9), pp.3168-3171. ⟨10.1128/JB.01783-08⟩
Article dans une revue hal-02658797v1
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Transcriptional regulation is insufficient to explain substrate-induced flux changes in [i]Bacillus subtilis[/i]

 Victor Chubukov , Markus Uhr , Ludovic Le Chat , Roelco J Kleijn , Matthieu Jules , et al.
Molecular Systems Biology, 2013, 9, ⟨10.1038/msb.2013.66⟩
Article dans une revue hal-01204283v1

Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila

 Tobias Sahr , Holger Brüggemann , Matthieu Jules , Mariella Lomma , Christiane Albert-Weissenberger , et al.
Molecular Microbiology, 2009, 72 (3), pp.741-762. ⟨10.1111/j.1365-2958.2009.06677.x⟩
Article dans une revue hal-02657418v1

The Legionella pneumophila F-box protein Lpp2082 (AnkB) modulates ubiquitination of the host protein parvin B and promotes intracellular replication.

 Mariella Lomma , Delphine Dervins-Ravault , Monica Rolando , T. Nora , Hayley J. Newton , et al.
Cellular Microbiology, 2010, 12 (9), pp.1272-1291. ⟨10.1111/j.1462-5822.2010.01467.x⟩
Article dans une revue hal-02661576v1

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

 P. Nicolas , U. Mader , Etienne Dervyn , T. Rochat , A. Leduc , et al.
Science, 2012, 335 (6072), pp.1103-1106. ⟨10.1126/science.1206848⟩
Article dans une revue hal-03343060v1

Bacterial growth physiology and RNA metabolism

 Anne-Gaëlle Planson , Vincent Sauveplane , Etienne Dervyn , Matthieu M. Jules
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2020, 1863 (5), pp.194502. ⟨10.1016/j.bbagrm.2020.194502⟩
Article dans une revue hal-02940832v1
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Molecular and Physiological Logics of the Pyruvate-Induced Response of a Novel Transporter in Bacillus subtilis

 Teddy Charbonnier , Dominique Le Coq , Stephen T Mcgovern , Magali Calabre , Olivier Delumeau , et al.
mBio, 2017, 8 (5), pp.1-16. ⟨10.1128/mBio.00976-17⟩
Article dans une revue hal-01814500v1
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New Insights into Trehalose Metabolism by Saccharomyces cerevisiae: NTH2 Encodes a Functional Cytosolic Trehalase, and Deletion of TPS1 Reveals Ath1p-Dependent Trehalose Mobilization

 Matthieu M. Jules , Gemma Beltran , Jean Marie François , Jean-Luc Parrou
Applied and Environmental Microbiology, 2008, 74 (3), pp.605-614. ⟨10.1128/AEM.00557-07⟩
Article dans une revue hal-02559752v1
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Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states

 Matthew L. M. L. Ferguson , Dominique D. Le Coq , Matthieu M. Jules , Stephane S. Aymerich , Ovidiu O. Radulescu , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (1), pp.155 - 160. ⟨10.1073/pnas.1110541108⟩
Article dans une revue hal-01004232v1

The Legionella pneumophila LetA/LetS two-component system exhibits rheostat-like behavior

 Rachel L Edwards , Matthieu Jules , Tobias Sahr , Carmen Buchrieser , Michele S. Swanson
Infection and Immunity, 2010, 78 (6), pp.2571-2583. ⟨10.1128/IAI.01107-09⟩
Article dans une revue hal-02662798v1
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Four species of bacteria deterministically assemble to form a stable biofilm in a millifluidic channel

 A. Monmeyran , W. Benyoussef , P. Thomen , N. Dahmane , Aurélie Baliarda , et al.
npj Biofilms and Microbiomes, 2021, 7 (1), pp.64. ⟨10.1038/s41522-021-00233-4⟩
Article dans une revue hal-03342840v1
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Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase

 Vladimir Bidnenko , Pierre Nicolas , Cyprien Guérin , Sandra Dérozier , Arnaud Chastanet , et al.
PLoS Genetics, 2023, 19 (2), pp.e1010618. ⟨10.1371/journal.pgen.1010618⟩
Article dans une revue hal-03974108v1
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Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase

 Vladimir Bidnenko , Pierre Nicolas , Cyprien Guérin , Sandra Dérozier , Arnaud Chastanet , et al.
2022
Pré-publication, Document de travail hal-03931118v1

Growth-rate-dependent protein production in bacteria

 Olivier Borkowski , Anne Goelzer , Marc Schaffer , Magali Calabre , Ulrike Mäder , et al.
13th international conference on Systems Biology, 2012, 13th international conference on Systems Biology, Canada
Poster de conférence hal-03852702v1
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Extrinsic noise prevents the independent tuning of gene expression noise and protein mean abundance in bacteria

 A. Deloupy , V. Sauveplane , J. Robert , S. Aymerich , M. Jules , et al.
Science Advances , 2020, 6 (41), pp.eabc3478. ⟨10.1126/sciadv.abc3478⟩
Article dans une revue hal-02989817v1

Absolute quantification of gene expression in individual bacterial cells using two-photon fluctuation microscopy

 Matthew L. Ferguson , Dominique Le Coq , Matthieu Jules , Stephane Aymerich , Nathalie Declerck , et al.
Analytical Biochemistry, 2011, 419 (2), pp.250 - 259. ⟨10.1016/j.ab.2011.08.017⟩
Article dans une revue istex hal-01019478v1
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Two types of transcriptional repression in living cells of [i]Bacillus subtilis[/i] characterized by number and brightness analysis

 Matthew L. Ferguson , Dominique Le Coq , Matthieu Jules , Bryan Chun , Stephane Aymerich , et al.
55. Annual Meeting of the Biophysical-Society, Mar 2011, Baltimore, Maryland, United States. ⟨10.1016/j.bpj.2010.12.1179⟩
Communication dans un congrès hal-01190611v1
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Malate-mediated carbon catabolite repression in bacillus subtilis involves the HPrK/CcpA pathway

 Frederik M. Meyer , Matthieu Jules , Felix M. P. Mehne , Dominique Le Coq , Jens J. Landmann , et al.
The Journal of applied bacteriology, 2011, 193 (24), pp.6939 - 6949. ⟨10.1128/JB.06197-11⟩
Article dans une revue hal-01019483v1
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