Accéder directement au contenu

Matthieu BARRET

65
Documents
Identifiants chercheurs

Présentation

I obtained my PhD in Microbiology in 2009 at Agrocampus Ouest (Rennes), studying bacterial-fungal interactions in the wheat rhizosphere. As a post-doctoral fellow with Fergal O’Gara at the University College Cork, I investigated the role of bacterial secretion systems in the rhizosphere competence of beneficial *Pseudomonas* strains. Since 2012, I worked as an INRAE scientist iat the IRHS (Angers). My research focuses on the the biological and ecological processes involved in the assembly of seed microbiota.

Publications

Image document

Honey bees change the microbiota of pollen

Alberto Prado , Matthieu Barret , Bernard Vaissière , Gloria Torres-Cortes
Doklady Botanical Sciences, 2023, 101 (1), pp.127-133. ⟨10.17129/botsci.3125⟩
Article dans une revue hal-04044122v1

Single seed microbiota: assembly and transmission from parent plant to seedling

Guillaume Chesneau , Béatrice Laroche , Anne Préveaux , Coralie Marais , Martial Briand
mBio, 2022, 13 (6), pp.0164822. ⟨10.1128/mbio.01648-22⟩
Article dans une revue hal-03834661v1
Image document

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

Rodrigo Alegria Terrazas , Senga Robertson-Albertyn , Aileen Mary Corral , Carmen Escudero-Martinez , Rumana Kapadia
mSystems, 2022, 7 (6), pp.00934-22. ⟨10.1128/msystems.00934-22⟩
Article dans une revue hal-03889528v1
Image document

Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference

Valerie Laval , Lydie Kerdraon , Matthieu Barret , Anne-Lise Liabot , Coralie Marais
Diversity, 2021, 13 (9), pp.404. ⟨10.3390/d13090404⟩
Article dans une revue hal-03368843v1
Image document

Transmission of Seed and Soil Microbiota to Seedling

Aude Rochefort , Marie Simonin , Coralie Marais , Anne-Yvonne Guillerm-Erckelboudt , Matthieu Barret
mSystems, 2021, 6 (3), pp.00446-21. ⟨10.1128/msystems.00446-21⟩
Article dans une revue hal-03299428v1

Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease.

Clemence Canivet , Norma David , Helene Pailhoriès , Martial Briand , Cynthia Guy
Alimentary Pharmacology & Therapeutics (Suppl), 2021, ⟨10.1111/apt.16262⟩
Article dans une revue hal-03138752v1

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species

Marie Simonin , Martial Briand , Guillaume Chesneau , Aude Rochefort , Coralie Marais
New Phytologist, 2021, 234 (4), pp.1448-1463. ⟨10.1111/nph.18037⟩
Article dans une revue hal-03299446v1

Maternal effects shape the seed mycobiome in Quercus petraea

Tania Fort , Charlie Pauvert , Amy Zanne , Otso Ovaskainen , Thomas Caignard
New Phytologist, inPress, pp.1-15. ⟨10.1111/nph.17153⟩
Article dans une revue hal-03140262v1

A rapid and simple method for assessing and representing genome sequence relatedness

Martial Briand , M Bouzid , G Hunault , M Legeay , Marion Fischer-Le Saux
Peer Community Journal, 2021, 1, pp.e24. ⟨10.24072/pcjournal.37⟩
Article dans une revue hal-03560813v1
Image document

Insect pollination: an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres-Cortés
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-60591-5⟩
Article dans une revue hal-02623164v1

Temporal dynamics of bacterial communities during seed development and maturation

Guillaume Chesneau , Gloria Torres-Cortes , Martial Briand , Armelle Darrasse , Anne Preveaux
FEMS Microbiology Ecology, 2020, 96 (12), pp.fiaa190. ⟨10.1093/femsec/fiaa190⟩
Article dans une revue hal-02972234v1
Image document

rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing

Jean-Claude Ogier , Sylvie Pages , Maxime Galan , Matthieu Barret , Sophie Gaudriault
BMC Microbiology, 2019, 19, ⟨10.1186/s12866-019-1546-z⟩
Article dans une revue hal-02627663v1
Image document

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

Lydie Kerdraon , Marie-Helene Balesdent , Matthieu Barret , Valerie Laval , Frederic Suffert
Microbial ecology, 2019, 77 (4), pp.931 - 945. ⟨10.1007/s00248-019-01340-8⟩
Article dans une revue hal-02620072v1
Image document

A rapid and simple method for assessing and representing genome sequences relatedness

Martial Briand , Mariam Bouzid , Gilles Hunault , Marc Legeay , Marion Le Saux
BioRxiv, 2019, ⟨10.1101/569640⟩
Article dans une revue hal-02171444v1
Image document

Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota

Aude Rochefort , Martial Briand , Coralie Marais , Marie-Hélène Wagner , Anne Laperche
Phytobiomes Journal, 2019, 3 (4), pp.326-336. ⟨10.1094/PBIOMES-06-19-0031-R⟩
Article dans une revue hal-02275205v1
Image document

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat;

Lydie Kerdraon , Matthieu Barret , Valerie Laval , Frédéric Suffert
Microbiome, 2019, 7 (1), pp.125 et suiv. ⟨10.1101/587667⟩
Article dans une revue hal-02624822v1
Image document

Differences in resource use lead to coexistence of seed-transmitted microbial populations

Gloria Torres-Cortés , B. J. Garcia , Stéphane Compant , Samir Rezki , P Jones
Scientific Reports, 2019, 9 (1), pp.6648. ⟨10.1038/s41598-019-42865-9⟩
Article dans une revue hal-02557440v1
Image document

Optimize the plant microbiota to increase plant growth and health

Matthieu Barret , P. Dufour , Mylène Durand-Tardif , Mahendra Mariadassou , Christophe Mougel
Consortium Biocontrôle et GIS Biotechnologies Vertes , 2019, ⟨10.15454/1fve-e105⟩
Article dans une revue hal-03297096v1
Image document

Maternal effects and environmental filtering shape seed fungal communities in oak trees

Tania Fort , Charlie Pauvert , Amy E. Zanne , Otso Ovaskainen , Thomas Caignard
BioRxiv, 2019, ⟨10.1101/691121⟩
Article dans une revue hal-02624819v1
Image document

Insect pollination is an ecological process involved in the assembly of the seed microbiota

Alberto Prado Farias , Brice Marolleau , Bernard Vaissière , Matthieu Barret , Gloria Torres Cortes
BioRxiv, 2019, ⟨10.1101/626895⟩
Article dans une revue hal-02624711v1
Image document

Assembly of seed-associated microbial communities within and across successive plant generations

Samir Rezki , Claire Campion , Philippe Simoneau , Marie-Agnès Jacques , Ashley Shade
Plant and Soil, 2018, 422 (1-2), pp.67-79. ⟨10.1007/s11104-017-3451-2⟩
Article dans une revue hal-02516590v1
Image document

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

Gloria Torres-Cortés , Sophie Bonneau , Olivier Bouchez , Clémence Genthon , Martial Briand
Frontiers in Plant Science, 2018, 9, pp.902. ⟨10.3389/fpls.2018.00902⟩
Article dans une revue hal-02516666v1

Commentary: seed bacterial inhabitants and their routes of colonization

Carolina Escobar Rodríguez , Birgit Mitter , Matthieu Barret , Angela Sessitsch , Stéphane Compant
Plant and Soil, 2018, 422 (1-2), pp.129-134. ⟨10.1007/s11104-017-3368-9⟩
Article dans une revue hal-02516685v1

Complete genomic sequence of Raphanus sativus cryptic virus 4 (RsCV4), a novel alphapartitivirus from radish

Laurence Svanella-Dumas , Sébastien Theil , Matthieu Barret , Thierry T. Candresse
Archives of Virology, 2018, 163 (4), pp.1097-1100. ⟨10.1007/s00705-017-3693-6⟩
Article dans une revue hal-02516679v1

Editorial special issue: the soil, the seed, the microbes and the plant

Eric Nelson , Philippe Simoneau , Matthieu Barret , Birgit Mitter , Stéphane Compant
Plant and Soil, 2018, 422 (1-2), pp.1-5. ⟨10.1007/s11104-018-3576-y⟩
Article dans une revue hal-02516579v1

Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds

Armelle Darrasse , Matthieu Barret , Sophie Cesbron , Stéphane Compant , Marie-Agnès Jacques
Plant and Soil, 2018, 422 (1-2), pp.115-128. ⟨10.1007/s11104-017-3329-3⟩
Article dans une revue hal-02516672v1

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

Claudia Bartoli , Léa Frachon , Matthieu Barret , Mylène Rigal , Carine Huard-Chauveau
The International Society of Microbiologial Ecology Journal, 2018, 12 (8), pp.2024-2038. ⟨10.1038/s41396-018-0152-7⟩
Article dans une revue hal-02373577v1
Image document

Genome sequence of the necrotrophic plant pathogen Alternaria brassicicola Abra43

Elodie Belmas , Martial Briand , Anthony Kwasiborski , Justine Colou , Guillaume Nguyen
Genome Announcements, 2018, 6 (6), pp.e01559-17. ⟨10.1128/genomeA.01559-17⟩
Article dans une revue hal-02516580v1

Bacterial and fungal communities vary with the type of organic substrate: implications for biocontrol of soilless crops

Virginie Montagne , Hervé Capiaux , Matthieu Barret , Patrice Cannavo , Sylvain Charpentier
Environmental Chemistry Letters, 2017, 15 (3), pp.537-545. ⟨10.1007/s10311-017-0628-0⟩
Article dans une revue hal-01524498v1
Image document

Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

Déborah Merda , Martial Briand , Eran Bosis , Céline Rousseau , Perrine Portier
Molecular Ecology, 2017, 26 (21), pp.1-14. ⟨10.1111/mec.14343⟩
Article dans une revue hal-01904571v1

Ecological patterns of seed microbiome diversity, transmission, and assembly

Ashley Shade , Marie-Agnès Jacques , Matthieu Barret
Current opinion in microbiology, 2017, 37, pp.15-22. ⟨10.1016/j.mib.2017.03.010⟩
Article dans une revue hal-02516692v1
Image document

Plant microbiota affects seed transmission of phytopathogenic microorganisms

Matthieu Barret , Jean-François Guimbaud , Armelle Darrasse , Marie Agnes Jacques
Molecular Plant Pathology, 2016, 17 (6), pp.791-795. ⟨10.1111/mpp.12382⟩
Article dans une revue hal-01353543v1

The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota

Matthieu Barret , Mariana Machado , Lionel Fizanne , Felix Araujo-Perez , Cynthia Guy
Hepatology, 2016, 63 (3), pp.764-75. ⟨10.1002/hep.28356⟩
Article dans une revue hal-02516681v1
Image document

Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods

Elisa Michel , Clarisse Monfort , Marion Deffrasnes , Stéphane Guezenec , Emilie Lhomme
International Journal of Food Microbiology, 2016, 239, pp.35-43. ⟨10.1016/j.ijfoodmicro.2016.07.034⟩
Article dans une revue hal-01527569v1
Image document

Terroir is a key driver of seed-associated microbial assemblages

Stéphanie Klaedtke , Marie Agnes Jacques , Lorenzo Raggi , Anne Preveaux , Sophie Bonneau
Environmental Microbiology, 2016, 18 (6), pp.1792-1804. ⟨10.1111/1462-2920.12977⟩
Article dans une revue hal-01455975v1
Image document

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

Samir Rezki , Claire Campion , Béatrice Iacomi-Vasilescu , Anne Préveaux , Youness Toualbia
PeerJ, 2016, 4, pp.e1923. ⟨10.7717/peerj.1923⟩
Article dans une revue hal-01392639v1

Answer to Ling et al “Predictive roles of gut dysbiosis on the severity of NAFLD”

Jérôme Boursier , Matthieu Barret , Anna Mae Diehl
Hepatology, 2016, 64 (3), pp.994-995. ⟨10.1002/hep.28562⟩
Article dans une revue hal-02632028v1

Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria

Aurélie Deveau , Matthieu Barret , Abdala Gamby Diedhiou , Johan Leveau , Wietse de Boer
Microbial ecology, 2015, 69 (1), pp.146-159. ⟨10.1007/s00248-014-0445-y⟩
Article dans une revue hal-01208788v1

Emergence Shapes the Structure of the Seed Microbiota

Matthieu Barret , Martial Briand , Sophie Bonneau , Anne Préveaux , Sophie Valière
Applied and Environmental Microbiology, 2015, 81 (4), pp.1257-1266. ⟨10.1128/AEM.03722-14⟩
Article dans une revue hal-01153480v1

Identification of novel phytase genes from an agricultural soil-derived metagenome.

Hao Tan , Marlies J Mooij , Matthieu Barret , Pardraig M Hegarty , Catriona Harington
World Journal of Microbiology and Biotechnology, 2014, 24 (1), pp.113-8. ⟨10.4014/jmb.1307.07007⟩
Article dans une revue hal-02639216v1
Image document

The SPI-1-like Type III secretion system: more roles than you think

Frank Egan , Matthieu Barret , Fergal O'Gara
Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00034⟩
Article dans une revue hal-01210004v1
Image document

Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction

Miguel Redondo-Nieto , Matthieu Barret , John Morrissey , Kieran Germaine , Francisco Martínez-Granero
BMC Genomics, 2013, 14 (1), pp.1-17. ⟨10.1186/1471-2164-14-54⟩
Article dans une revue hal-02650368v1

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

Matthieu Barret , Frank Egan , Jennifer Moynihan , John P. Morrissey , Olivier Lesouhaitier
Environmental Microbiology Reports, 2013, 5 (3), pp.377-386. ⟨10.1111/1758-2229.12039⟩
Article dans une revue hal-02644403v1
Image document

Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans

Robert Phelan , Matthieu Barret , Paul Cotter , Paula O'Connor , Rui Chen
Marine drugs, 2013, 11 (6), pp.1878-1898. ⟨10.3390/md11061878⟩
Article dans une revue hal-02651130v1

Molecular evolution of LysR-type transcriptional regulation in Pseudomonas aeruginosa

F. Jerry Reen , Matthieu Barret , Emilie Fargier , Marcus O’muinneacháin , Fergal O’gara
Molecular Phylogenetics and Evolution, 2013, 66 (3), pp.1041-1049. ⟨10.1016/j.ympev.2012.12.014⟩
Article dans une revue hal-02649223v1

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots

Muriel Marchi , Morgane Boutin , Kévin Gazengel , Claude Rispe , Jean-Pierre Gauthier
Environmental Microbiology Reports, 2013, 5 (3), pp.393 - 403. ⟨10.1111/1758-2229.12048⟩
Article dans une revue hal-01208629v1

Long-term phosphorus fertilisation increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils

Hao Tan , Matthieu Barret , Marlies J. Mooij , Olivia Rice , John P. Morrissey
Biology and Fertility of Soils, 2013, 49 (6), pp.661-672. ⟨10.1007/s00374-012-0755-5⟩
Article dans une revue hal-02653047v1

Distribution and diversity of bacterial secretion systems across metagenomic datasets.

Matthieu Barret , Frank Egan , Fergal O'Gara
Environmental Microbiology Reports, 2013, 5 (1), pp.117-26. ⟨10.1111/j.1758-2229.2012.00394.x⟩
Article dans une revue hal-02653049v1

Genome Sequence of the Biocontrol Strain Pseudomonas fluorescens F113

M. Redondo-Nieto , Matthieu Barret , J. P. Morrisey , K. Germaine , F. Martinez-Granero
Journal of Bacteriology, 2012, 194 (5), pp.1273-1274. ⟨10.1128/JB.06601-11⟩
Article dans une revue hal-02652031v1

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

Matthieu Barret , John P. Morrissey , Fergal O’gara
Biology and Fertility of Soils, 2011, 47 (7), pp.729-743. ⟨10.1007/s00374-011-0605-x⟩
Article dans une revue hal-02650050v1

Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered

Matthieu Barret , F. Egan , E. Fargier , J. P. Morrissey , F. O'Gara
Microbiology, 2011, 157 (6), pp.1726-1739. ⟨10.1099/mic.0.048645-0⟩
Article dans une revue hal-02650365v1

Bacterial-fungal Interactions: hyphens between agricultural, clinical, environmental, and food microbiologists

Pascale P. Frey-Klett , Peter Burlinson , Aurélie Deveau , Matthieu Barret , M. Tarkka
Microbiology and Molecular Biology Reviews, 2011, 75 (4), pp.583 - +. ⟨10.1128/MMBR.00020-11⟩
Article dans une revue hal-02651157v1
Image document

Computational prediction of the Crc regulon identifies genus-wide and species-specific targets of catabolite repression control in Pseudomonas bacteria

Thomas Browne , Matthieu Barret , Fergal O'Gara , John P Morrissey
BMC Microbiology, 2010, 10 (1), pp.1-12. ⟨10.1186/1471-2180-10-300⟩
Article dans une revue hal-02656830v1

The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp

Matthieu Barret , P. Frey-Klett , M. Boutin , Anne-Yvonne Guillerm-Erckelboudt , Frédérique Martin
New Phytologist, 2009, 181 (2), pp.435-447. ⟨10.1111/j.1469-8137.2008.02675.x⟩
Article dans une revue inria-00359115v1

Effect of wheat roots infected with the pathogenic fungus gaeumannomyces graminis var. tritici on gene expression of the biocontrol bacterium pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale P. Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec
Molecular Plant-Microbe Interactions, 2009, 22 (12), pp.1611-1623. ⟨10.1094/MPMI-22-12-1611⟩
Article dans une revue hal-02663862v1

Bactéries et champignons interagissent pour la santé des plantes

Alain A. Sarniguet , Matthieu Barret , Lionel Lebreton , Stéphanie Daval
Biofutur, 2008, 284, pp.30-33
Article dans une revue hal-02664697v1

Plant Microbiota: Diversity, Transmission and Function

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher
Extended Biocontrol, Springer Netherlands, pp.111-117, 2022, ⟨10.1007/978-94-024-2150-7_9⟩
Chapitre d'ouvrage hal-04059155v1

Le microbiote des plantes : diversité, transmission et fonction

Matthieu Barret , Marc Buée , Christophe Mougel , Corinne Vacher
Biocontrôle. Éléments pour une protection agroécologique des cultures., Editions Quae, 2020, Savoir Faire, 978-2-7592-3076-1
Chapitre d'ouvrage hal-03319624v1

Interactions plantes/micro-organismes dans la rhizosphère

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato
Les sols au coeur de la zone critique 6, écologie, ISTE, 2018, ISBN : 9781784053840 (papier) ISBN : 9781784063849 (ebook)
Chapitre d'ouvrage hal-02786073v1

Plant/micro-organism interactions in the rhizosphere. Chap 4

Philippe Lemanceau , Matthieu Barret , Manuel Blouin , Sylvie Mazurier , Barbara Pivato
Soils as a Key Component of the Critical Zone vol 6 Geosciences Series – Soils Set, ISTE Ltd and John Wiley & Sons, 2018, 978-1-119-57311-1
Chapitre d'ouvrage hal-02786890v1

Plant communication with associated microbiota in the spermosphere, rhizosphere and phyllosphere

Philippe P. Lemanceau , Matthieu Barret , Sylvie Mazurier , Samuel Mondy , Barbara Pivato
How plants communicate with their biotic environment, 82, Academic Press - Elsevier, 2017, Advances in Botanical Research, 978-0-12-801431-8. ⟨10.1016/bs.abr.2016.10.007⟩
Chapitre d'ouvrage hal-01608302v1

Combined effects of wheat roots and pathogenic fungus Gaeumannomyces graminis var tritici on Gene Expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp

Matthieu Barret , Pascale Frey-Klett , Anne-Yvonne Guillerm-Erckelboudt , Morgane Boutin , Grégory Guernec
Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2, Wiley, 2013, 978-1-118-29617-2. ⟨10.1002/9781118297674.ch61⟩
Chapitre d'ouvrage hal-02803298v1