A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
. International Wheat Genome Sequencing Consortium (iwgsc)
,
Michael M. Alaux
,
Françoise F. Alfama-Depauw
,
Frédéric Choulet
,
Loïc Couderc
,
et al.
Article dans une revue
hal-02640843v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Recent algorithmic advances for combinatorial optimization in graphical models
David Allouche
,
Simon de Givry
,
Georgios Katsirelos
,
Thomas Schiex
,
Matthias Zytnicki
,
et al.
23rd International Symposium on Mathematical Programming (ISMP-18) , Jul 2018, Bordeaux, France. 80 p
Communication dans un congrès
hal-02785380v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and function
Sylvain Foissac
,
Sarah Djebali Quelen
,
Nathalie Vialaneix
,
Matthias Zytnicki
,
Andrea Rau
,
et al.
Conference of the International Society for Animal Genetics (ISAG 2019) , Jul 2019, Lleida, Spain
Communication dans un congrès
hal-02788476v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Development of genomic resources to study the structure, function and evolution of the oak genome
Christophe Plomion
,
Joelle J. Amselem
,
Jean-Marc Aury
,
Catherine Bodenes
,
Emilie Chancerel
,
et al.
IUFRO working group "Genetics of Quercus and Nothofagus" , Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès
hal-01019850v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
mmannot
Matthias Zytnicki
Logiciel
hal-04205595v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Whole metagenome analysis with metagWGS
Joanna Fourquet
,
Adeline Chaubet
,
Hélène Chiapello
,
Christine Gaspin
,
Marisa Haenni
,
et al.
JOBIM 2019 , Jul 2019, Nantes, France.
, 2019
Poster de conférence
hal-02788137v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds
Amandine Suin
,
Camille Marcuzzo
,
Camille Eché
,
Andreea Dréau
,
Clément Birbes
,
et al.
Plant and Genome San Diego 2024 , Jan 2024, San Diego, United States
Poster de conférence
hal-04432840v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]
Sylvain Foissac
,
Sarah Djebali Quelen
,
Hervé Acloque
,
Philippe Bardou
,
Fany Blanc
,
et al.
36th International Society for Animal Genetics Conference , Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence
hal-01608449v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Multi-species annotation of transcriptome and chromatin structure in domesticated animals
Sylvain Foissac
,
Sarah Djebali
,
Kylie Munyard
,
Nathalie Vialaneix
,
Andrea Rau
,
et al.
Article dans une revue
hal-02437599v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 subunit LHP1 function in concert to regulate the transcription of stress-responsive genes
Anne M. Molitor
,
David Latrasse
,
Matthias Zytnicki
,
Philippe P. Andrey
,
Nicole Houba Hérin
,
et al.
Article dans une revue
hal-02633928v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
HiC DOC: detecting and comparing genomic compartments
Cyril Kurylo
,
Sylvain Foissac
,
Matthias Zytnicki
JOBIM , Jun 2020, Paris, France. 2020
Poster de conférence
hal-04199161v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
De quelle épigénétique parle-t-on ?
Matthias Zytnicki
Journées bioinformatiques de l'INRA , Mar 2016, Toulouse, France. 23 p
Communication dans un congrès
hal-01603922v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
mmannot: How to improve small–RNA annotation?
Matthias Zytnicki
,
Christine Gaspin
Article dans une revue
hal-03182914v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
mmquant: how to count multi-mapping reads?
Matthias Zytnicki
Article dans une revue
hal-01608562v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions
Sarah Djebali Quelen
,
Kylie Munyard
,
Nathalie Villa-Vialaneix
,
Cédric Cabau
,
Andrea Rau
,
et al.
36th International Society for Animal Genetics Conference , Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence
hal-01603033v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Characterization of 3D genomic interactions in fetal pig muscle
Maria Marti-Marimon
,
Hervé Acloque
,
Matthias Zytnicki
,
Sarah Djebali Quelen
,
Nathalie Villa-Vialaneix
,
et al.
36th International Society for Animal Genetics Conference , Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence
hal-01608046v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Anytime hybrid best-first search with tree decomposition for weighted CSP
David Allouche
,
Simon de Givry
,
George Katsirelos
,
Thomas Schiex
,
Matthias Zytnicki
CP 2015 - 21st International Conference on Principles and Practice of Constraint Programming , Aug 2015, Cork, Ireland. 17 p.,
⟨10.1007/978-3-319-23219-5_2⟩
Communication dans un congrès
hal-01198361v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis
Sophie S. Schbath
,
Veronique V. Martin
,
Matthias Zytnicki
,
Julien Fayolle
,
Valentin Loux
,
et al.
Article dans une revue
hal-02645697v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig
Sylvain Foissac
,
Sarah Djebali
,
Kylie Munyard
,
Nathalie Vialaneix
,
Andrea Rau
,
et al.
2018
Pré-publication, Document de travail
hal-02791029v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
De novo assembling 19 maize inbred lines of the European germplasm
Carole Iampietro
,
Camille Eché
,
Clement Birbes
,
Andreea Dreau
,
Erwan Denis
,
et al.
63rd Annual Maize Genetics Meeting , Mar 2021, virtuel, United States
Poster de conférence
hal-03539396v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
Andrew D W Geering
,
Florian Maumus
,
Dario Copetti
,
Nathalie Choisne
,
Derrick J Zwickl
,
et al.
Article dans une revue
hal-02631214v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Can Probabilistic Model Checking Explore Ribo-Nucleic Acid Folding Space?
Stefan Janssen
,
Loïc Paulevé
,
Yann Ponty
,
Balaji Raman
,
Matthias Zytnicki
IWBDA - 4th International Workshop on Bio-Design Automation - 2012 , Jun 2012, San Francisco, United States
Communication dans un congrès
hal-00712557v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Cohérence d'arc virtuelle pour les CSP pondérés
Martin Cooper
,
Simon de Givry
,
Marti Sanchez
,
Thomas Schiex
,
Matthias Zytnicki
JFPC 2008- Quatrièmes Journées Francophones de Programmation par Contraintes , LINA - Université de Nantes - Ecole des Mines de Nantes, Jun 2008, Nantes, France. pp.237-246
Communication dans un congrès
inria-00292640v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes
Camille Mestre
,
Sarah Djebali Quelen
,
Thomas Faraut
,
Nathalie Vialaneix
,
Andrea Rau
,
et al.
European Conference on Computational Biology (ECCB 2018) , Sep 2018, Athènes, Greece.
, 2018
Poster de conférence
hal-02784857v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
srnaMapper: an optimal mapping tool for sRNA-Seq reads
Matthias Zytnicki
,
Christine Gaspin
Article dans une revue
hal-04089717v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
srnamapper
Matthias Zytnicki
Logiciel
hal-04203130v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Benchmarking read mapping on pangenomic variation graphs
Hajar Bouhamout
,
Benjamin Linard
,
Matthias Zytnicki
jobim 2023 , Jun 2023, Nice, France
Poster de conférence
hal-04150552v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Influenza vaccination induces autoimmunity against orexinergic neurons in a mouse model for narcolepsy
Raphaël Bernard-Valnet
,
David Frieser
,
Xuan-Hung Nguyen
,
Leila Khajavi
,
Clémence Quériault
,
et al.
Article dans une revue
hal-03669984v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
srnaMapper : a mapping tool for short RNA reads
Matthias Zytnicki
JOBIM , Jul 2019, Nantes, France. 2019
Poster de conférence
hal-04199257v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More
Cohérence d'arc existencielle : un pas de plus vers la cohérence d'arc complète
Matthias Zytnicki
,
Federico Heras
,
Simon de Givry
,
Javier Larrosa
Premières Journées Francophones de Programmation par Contraintes , CRIL - CNRS FRE 2499, Jun 2005, Lens, pp.139-148
Communication dans un congrès
inria-00000061v1
Actions
Partager
Gmail
Facebook
X
LinkedIn
More