Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis
Angel E. Dago
,
Alexander Schug
,
Andrea Procaccini
,
James A. Hoch
,
Martin Weigt
,
et al.
Proceedings of the National Academy of Sciences of the United States of America , 2012, 109 (26), pp.E1733-E1742.
⟨10.1073/pnas.1201301109⟩
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hal-01528442v1
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An evolution-based model for designing chorismate mutase enzymes
William Russ
,
Matteo Figliuzzi
,
Christian Stocker
,
Pierre Barrat-Charlaix
,
Michael Socolich
,
et al.
Article dans une revue
hal-04028834v1
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Approximation schemes for the dynamics of diluted spin models: the Ising ferromagnet on a Bethe lattice
Guilhem Semerjian
,
Martin Weigt
Journal of Physics A: Mathematical and Theoretical , 2004, 37, pp.5525
Article dans une revue
hal-00117088v1
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Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis
Guido Uguzzoni
,
Shalini John Lovis
,
Francesco Oteri
,
Alexander Schug
,
Hendrik Szurmant
,
et al.
Proceedings of the National Academy of Sciences of the United States of America , 2017, 114 (13), pp.E2662 - E2671.
⟨10.1073/pnas.1615068114⟩
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hal-01566982v1
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Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.
Thomas Gueudré
,
Carlo Baldassi
,
Marco Zamparo
,
Martin Weigt
,
Andrea Pagnani
Proceedings of the National Academy of Sciences of the United States of America , 2016, 113 (43), pp.12186-12191.
⟨10.1073/pnas.1607570113⟩
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hal-01567010v1
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Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data
Edwin Rodriguez Horta
,
Pierre Barrat-Charlaix
,
Martin Weigt
Article dans une revue
hal-02430765v1
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A ferromagnet with a glass transition
Silvio Franz
,
Marc Mézard
,
Federico Ricci-Tersenghi
,
Martin Weigt
,
Riccardo Zecchina
EPL - Europhysics Letters , 2001, 55, pp.465
Article dans une revue
hal-00002405v1
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Direct Coupling Analysis for Protein Contact Prediction
Faruck Morcos
,
Terence Hwa
,
Jose N. Onuchic
,
Martin Weigt
Kihara, D.
Protein Structure Prediction , 1137, Humana Press, pp.55-70, 2014, Methods in Molecular Biology, 978-1-4939-0366-5; 978-1-4939-0365-8.
⟨10.1007/978-1-4939-0366-5_5⟩
Chapitre d'ouvrage
hal-01528529v1
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Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1
Matteo Figliuzzi
,
Hervé Jacquier
,
Alexander Schug
,
Oliver Tenaillon
,
Martin Weigt
Article dans une revue
hal-01284957v1
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Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility
Janice Reimer
,
Maximilian Eivaskhani
,
Ingrid Harb
,
Alba Guarné
,
Martin Weigt
,
et al.
Article dans une revue
hal-04028848v1
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Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria
Alejandro Couce
,
Larissa Viraphong Caudwell
,
Christoph Feinauer
,
Thomas Hindré
,
Jean-Paul Feugeas
,
et al.
Proceedings of the National Academy of Sciences of the United States of America , 2017, 114 (43), pp.E9026 - E9035.
⟨10.1073/pnas.1705887114⟩
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hal-01653591v1
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Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon
Christoph Feinauer
,
Hendrik Szurmant
,
Martin Weigt
,
Andrea Pagnani
Article dans une revue
hal-01294651v1
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Phylogenetic correlations can suffice to infer protein partners from sequences
Guillaume Marmier
,
Martin Weigt
,
Anne-Florence Bitbol
Article dans une revue
hal-02347705v1
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Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks
Andrea Procaccini
,
Bryan Lunt
,
Hendrik Szurmant
,
Terence Hwa
,
Martin Weigt
,
et al.
Article dans une revue
hal-01588986v1
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Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems
Simone Ciarella
,
Jeanne Trinquier
,
Martin Weigt
,
Francesco Zamponi
Article dans une revue
hal-04028482v1
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Cavity Approach to the Random Solid State
Xiaoming Mao
,
Paul M. Goldbart
,
Marc Mezard
,
Martin Weigt
Physical Review Letters , 2005, 95, pp.148302
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hal-00011184v1
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Perturbation Biology: Inferring Signaling Networks in Cellular Systems
Evan J. Molinelli
,
Anil Korkut
,
Weiqing Wang
,
Martin L. Miller
,
Nicholas P. Gauthier
,
et al.
Article dans une revue
hal-01527329v1
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A multi-scale coevolutionary approach to predict interactions between protein domains
Giancarlo Croce
,
Thomas Gueudré
,
Maria Virginia Ruiz Cuevas
,
Victoria Keidel
,
Matteo Figliuzzi
,
et al.
Article dans une revue
hal-02417872v1
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Improving landscape inference by integrating heterogeneous data in the inverse Ising problem
Pierre Barrat-Charlaix
,
Matteo Figliuzzi
,
Martin Weigt
Article dans une revue
hal-01405150v1
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Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners
Carlo Baldassi
,
Marco Zamparo
,
Christoph Feinauer
,
Andrea Procaccini
,
Riccardo Zecchina
,
et al.
Article dans une revue
hal-01344551v1
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Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes
Lucile Vigué
,
Giancarlo Croce
,
Marie Petitjean
,
Etienne Ruppé
,
Olivier Tenaillon
,
et al.
Article dans une revue
hal-03721049v1
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From principal component to direct coupling analysis of coevolution in proteins: Low-eigenvalue modes are needed for structure prediction
Simona Cocco
,
Remi Monasson
,
Martin Weigt
Article dans une revue
hal-00764377v2
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Meet-U: educating through research immersion
Nika Abdollahi
,
Alexandre Albani
,
Eric Anthony
,
Agnes Baud
,
Mélissa Cardon
,
et al.
Article dans une revue
hal-01722019v1
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The evolution of the temporal program of genome replication
Nicolas Agier
,
Stéphane Delmas
,
Qing Zhang
,
Aubin Fleiss
,
Yan Jaszczyszyn
,
et al.
Article dans une revue
hal-02175123v1
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Inference of Hopfield-Potts patterns from covariation in protein families: calculation and statistical error bars
Simona Cocco
,
Rémi Monasson
,
Martin Weigt
Article dans une revue
hal-01567856v1
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Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
Juan Rodriguez-Rivas
,
Giancarlo Croce
,
Maureen Muscat
,
Martin Weigt
Article dans une revue
hal-03721064v1
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Genetic covariance
Hendrik Szurmant
,
Martin Weigt
Brenner's Encyclopedia of Genetics, 2nd edition , 2013
Chapitre d'ouvrage
hal-01567874v1
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Integrating Genomic Information with Molecular Simulation to Understand Protein Complex- and Active Conformation Formation in Two-Component Signal Transduction
Alexander Schug
,
Martin Weigt
,
Hendrik Szurmant
Article dans une revue
hal-01528433v1
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Genomics-aided structure prediction
Joanna I. Sulkowska
,
Faruck Morcos
,
Martin Weigt
,
Terence Hwa
,
Jose N. Onuchic
Proceedings of the National Academy of Sciences of the United States of America , 2012, 109 (26), pp.10340-10345.
⟨10.1073/pnas.1207864109⟩
Article dans une revue
hal-01528443v1
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Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins
Carlos Gandarilla-Pérez
,
Sergio Pinilla
,
Anne-Florence Bitbol
,
Martin Weigt
Article dans une revue
hal-04054471v1
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