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Marie-Laure Martin

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Expression of cell-wall related genes is highly variable and correlates with sepal morphology

Diego A Hartasánchez , Annamaria Kiss , Virginie Battu , Charline Soraru , Abigail Delgado-Vaquera
Peer Community Journal, 2023, 3 (93), ⟨10.24072/pcjournal.327⟩
Article dans une revue hal-04248384v1
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Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize

Yacine Djabali , Renaud Rincent , Marie-Laure Martin , Mélisande Blein-Nicolas
TAG Theoretical and Applied Genetics, 2023, 136 (11), pp.228. ⟨10.1007/s00122-023-04458-z⟩
Article dans une revue hal-04002996v2
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A localized osmotic stress activates systemic responses to N-limitation in Medicago truncatula-Sinorhizobium symbiotic plants

Marie-Laure Martin , Marjorie Pervent , Ilana Lambert , Stefano Colella , Mathilde Tancelin
Frontiers in Plant Science, 2023, 14, pp.1288070. ⟨10.3389/fpls.2023.1288070⟩
Article dans une revue hal-04276739v1
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A cell wall-associated gene network shapes leaf boundary domains

Nathalie Bouré , Alexis Peaucelle , Magali Goussot , Bernard Adroher , Ludivine Soubigou-Taconnat
Development (Cambridge, England), 2022, 149 (11), pp.dev200359. ⟨10.1242/dev.200359⟩
Article dans une revue hal-03737566v1

Error rate control for classification rules in multiclass mixture models

Tristan Mary-Huard , Vittorio Perduca , Marie-Laure Martin-Magniette , Gilles Blanchard
The international journal of biostatistics, 2022, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩
Article dans une revue hal-04421501v1
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Fusarium graminearum infection strategy in wheat involves a highly conserved genetic program that controls the expression of a core effectome

Florian Rocher , Tarek Alouane , Géraldine Philippe , Marie-Laure Martin , Philippe Label
International Journal of Molecular Sciences, 2022, 23 (3), pp.22. ⟨10.3390/ijms23031914⟩
Article dans une revue hal-03583788v1
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A comprehensive map of preferentially located motifs reveals distinct proximal cis -regulatory elements in plants

Julien Rozière , Cécile Guichard , Véronique Brunaud , Marie-Laure Martin , Sylvie Coursol
Frontiers in Plant Science, 2022, 13, pp.976371. ⟨10.3389/fpls.2022.976371⟩
Article dans une revue hal-04400803v1

Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress

Kevin Baudry , Christine Paysant-Le Roux , Stefano Colella , Benoît Castandet , Marie-Laure Martin-Magniette
Journal of visualized experiments : JoVE, 2022, 185, pp.e62566. ⟨10.3791/62566⟩
Article dans une revue hal-04274577v1
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Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants

Federica de Marco , Brigitte Batailler , Michael R. Thorpe , Frédérique Razan , Rozenn Le Hir
International Journal of Molecular Sciences, 2021, 22 (2), pp.745. ⟨10.3390/ijms22020745⟩
Article dans une revue hal-02935915v1
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Error rate control for classification rules in multiclass mixture models

Tristan Mary-Huard , Vittorio Perduca , Marie-Laure Martin-Magniette , Gilles Blanchard
The international journal of biostatistics, 2021, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩
Article dans une revue hal-03357461v1

Systemic control of nodule formation by plant nitrogen demand requires autoregulation-dependent and independent mechanisms

Marjorie Pervent , Ilana Lambert , Marc Tauzin , Alicia Karouani , Martha Nigg
Journal of Experimental Botany, 2021, 72 (22), pp.7942-7956. ⟨10.1093/jxb/erab374⟩
Article dans une revue hal-03596911v1

A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene

Tan-Trung Nguyen , Noelya Planchard , Jennifer Dahan , Nadège Arnal , Sandrine Balzergue
Molecular Biology and Evolution, 2021, 38 (8), pp.3445-3458. ⟨10.1093/molbev/msab115⟩
Article dans une revue hal-03236517v1

Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression

Benjamin Vittrant , Alain Bergeron , Oscar Eduardo Molina , Mickael Leclercq , Xavier-Philippe Légaré
OncoImmunology, 2020, 9 (1), pp.1851950. ⟨10.1080/2162402X.2020.1851950⟩
Article dans une revue hal-03219229v1
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Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency

Titouan Bonnot , Pierre Martre , Victor Hatte , Mireille Dardevet , Philippe Leroy
Plant Physiology, 2020, 183 (2), pp.501-516. ⟨10.1104/pp.19.00842⟩
Article dans une revue hal-02553742v1

Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer

Benjamin Vittrant , Mickael Leclercq , Marie-Laure Martin-Magniette , Colin Collins , Alain Bergeron
Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.550894⟩
Article dans une revue hal-03269716v1
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The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis

Fabien Chardon , Gwendal Cueff , Etienne Delannoy , Fabien Aubé , Aurélia Lornac
Plants, 2020, 9 (5), pp.573. ⟨10.3390/plants9050573⟩
Article dans une revue hal-02959209v1
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Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling

Ilana Lambert , Marjorie Pervent , Antoine Le Quéré , Gilles Clement , Marc Tauzin
Journal of Experimental Botany, 2020, 71 (16), pp.5039-5052. ⟨10.1093/jxb/eraa221⟩
Article dans une revue hal-02921428v1
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DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

Ilana Lambert , Christine Paysant-Le Roux , Stefano Colella , Marie-Laure Martin-Magniette
Plant Methods, 2020, 16 (1), ⟨10.1186/s13007-020-00611-7⟩
Article dans une revue hal-02921433v1
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Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development

Amélie Andres Robin , Mathieu C Reymond , Géraldine Brunoud , Martin-Magniette Marie-Laure , Françoise Moneger
Plant Signaling and Behavior, 2020, 15 (7), pp.1771937. ⟨10.1080/15592324.2020.1771937⟩
Article dans une revue hal-03068443v1
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Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation

Thomas Blein , Coline Balzergue , Thomas Roulé , Marc Gabriel , Laetitia Scalisi
Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩
Article dans une revue cea-02962421v1
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Gene expression predictions and networks in natural populations supports the omnigenic theory

Aurélien Chateigner , Marie-Claude Lesage-Descauses , Odile Rogier , Véronique Jorge , Jean-Charles Leplé
BMC Genomics, 2020, 21 (1), pp.1-16. ⟨10.1186/s12864-020-06809-2⟩
Article dans une revue hal-02902844v1

Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection

Simon Klau , Marie-Laure Martin-Magniette , Anne-Laure Boulesteix , Sabine Hoffmann
Biometrical Journal, 2019, 62 (3), pp.670-687. ⟨10.1002/bimj.201800309⟩
Article dans une revue hal-02618372v1
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Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor

Clément Boussardon , Marie-Laure Martin-Magniette , Béatrice Godin , Abdelilah Benamar , Benjamin Vittrant
Frontiers in Plant Science, 2019, 10, pp.32. ⟨10.3389/fpls.2019.00032⟩
Article dans une revue hal-02557423v1
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Large-Scale Automatic Feature Selection for Biomarker Discovery in High-Dimensional OMICs Data

Mickael Leclercq , Benjamin Vittrant , Marie-Laure Magniette , Marie Pier Scott Boyer , Olivier Perin
Frontiers in Genetics, 2019, 10, pp.452. ⟨10.3389/fgene.2019.00452⟩
Article dans une revue hal-02623625v1

In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi

Félix Lallemand , Marie-Laure Martin-Magniette , François Gilard , Bertrand Gakière , Alexandra Launay-Avon
Plant Journal, 2019, 98 (5), pp.826-841. ⟨10.1111/tpj.14276⟩
Article dans une revue hal-02617745v1
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A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize

Clément Cuello , Aurélie Baldy , Véronique Brunaud , Johann Joets , Etienne Delannoy
PLoS ONE, 2019, 14 (12), pp.e0227011. ⟨10.1371/journal.pone.0227011⟩
Article dans une revue hal-02429157v1
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Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo

Kaori Sakai , Ludivine Taconnat , Néro Borrega , Jennifer Yansouni , Véronique Brunaud
Plant Methods, 2018, 14, pp.10. ⟨10.1186/s13007-018-0275-x⟩
Article dans une revue hal-02625394v1
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Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat

Elodie Rey , Michaël M. Abrouk , Gabriel Keeble-Gagnère , Miroslava Karafiatova , Jan Vrána
Plant Biotechnology Journal, 2018, 16 (10), pp.1767-1777. ⟨10.1111/pbi.12913⟩
Article dans une revue hal-02621747v1
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Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness

Pascal Montoro , Shuangyang Wu , Bénédicte Favreau , Eva Herlinawati , Cécile Labrune
Scientific Reports, 2018, 8, pp.8483. ⟨10.1038/s41598-018-26854-y⟩
Article dans une revue hal-02624945v1

Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period (vol 252, pg 347, 2016)

Zhazira Yesbergenova-Cuny , Sylvie Dinant , Marie-Laure Martin-Magniette , Isabelle Quillere , Patrick P. Armengaud
Plant Science, 2018, 272, pp.207-207. ⟨10.1016/j.plantsci.2018.04.022⟩
Article dans une revue hal-02618059v1
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Nitrogen limitation alters the response of specific genes to biotic stress

Mahsa Farjad , Martine Rigault , Stephanie Pateyron , Marie-Laure Martin-Magniette , Annemarie Krapp
International Journal of Molecular Sciences, 2018, 19 (11), pp.3364. ⟨10.3390/ijms19113364⟩
Article dans une revue hal-02625219v1
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Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field

Fabrice Roux , Tristan Mary-Huard , Elise Barillot , Estelle Wenes , Lucy Rosalie L. R. Botran
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩
Article dans une revue hal-01294000v1

Genetic variability of the phloem sap metabolite content of maize ([i]Zea mays[/i] L.) during the kernel-filling period

Zhazira Yesbergenova-Cuny , Sylvie Dinant , Marie-Laure Magniette , Isabelle Quillere , Patrick Armengaud
Plant Science, 2016, 252, pp.347-357. ⟨10.1016/j.plantsci.2016.08.007⟩
Article dans une revue hal-01363555v1

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis

Guillem Rigaill , Sandrine Balzergue , Véronique Brunaud , Eddy Blondet , Andrea Rau
Briefings in Bioinformatics, 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩
Article dans une revue hal-01595551v1
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Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies

Hélène Kiefer , Luc Jouneau , Evelyne E. Campion , Delphine Rousseau-Ralliard , Thibaut Larcher
Scientific Reports, 2016, 6, pp.38869. ⟨10.1038/srep38869⟩
Article dans une revue hal-02633915v1

Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models

Andrea Rau , Cathy Maugis-Rabusseau , Marie-Laure Magniette , Gilles Celeux
Bioinformatics, 2015, 31 (9), pp.1420-1427. ⟨10.1093/bioinformatics/btu845⟩
Article dans une revue hal-01108821v2
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Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences

Nicolas Frei Dit Frey , Anna Victoria Garcia , Jean Bigeard , Rim Zaag , Eduardo Bueso
Genome Biology, 2014, 15 (6), pp.R87. ⟨10.1186/gb-2014-15-6-r87⟩
Article dans une revue hal-02631808v1
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Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering

Gilles Celeux , Marie-Laure Martin-Magniette , Cathy Maugis , Adrian E. Raftery
Journal de la Société Française de Statistique, 2014, 155 (2), pp.57-71
Article dans une revue hal-00943473v1

Hidden Markov Models with mixtures as emission distributions

Stevenn Volant , Caroline Bérard , Marie-Laure Martin-Magniette , Stéphane Robin
Statistics and Computing, 2014, 24 (4), pp.493-504. ⟨10.1007/s11222-013-9383-7⟩
Article dans une revue pasteur-02612867v1

Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana

Ana Victoria Garcia Malervi , Amélie Charrier , Adam Schikora , Jean Bigeard , Stephanie Pateyron
Molecular Plant, 2014, 7 (4), pp.657 - 674. ⟨10.1093/mp/sst145⟩
Article dans une revue hal-01197624v1
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MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

Caroline Berard , Michael Seifert , Tristan Mary-Huard , Marie-Laure Magniette
BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-271⟩
Article dans une revue hal-01190745v1
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A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

David Rengel , Sandrine Arribat , Pierre Maury , Marie-Laure Martin-Magniette , Thibault Hourlier
PLoS ONE, 2012, 7 (10), pp.e45249. ⟨10.1371/journal.pone.0045249⟩
Article dans une revue hal-02644423v1

SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values

Cathy Maugis-Rabusseau , Martin-Magniette Marie-Laure , Pelletier Sandra
Journal de la Société Française de Statistique, 2012, 15 (2), pp.21-36
Article dans une revue hal-00972003v1
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Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency

Stevenn Volant , Marie-Laure Magniette Martin-Magniette , Stephane S. Robin
Computational Statistics and Data Analysis, 2012, 56 (8), pp.2375-2387. ⟨10.1016/j.csda.2012.01.027⟩
Article dans une revue hal-01000046v1

Variable selection in model-based discriminant analysis

Cathy Maugis , Gilles Celeux , Marie-Laure Martin-Magniette
Journal of Multivariate Analysis, 2011, 102 (10), pp.1374-1387. ⟨10.1016/j.jmva.2011.05.004⟩
Article dans une revue hal-00666826v1
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Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids

Ali M. Banaei Moghaddam , François Roudier , Michael Seifert , Caroline Bérard , Marie-Laure Martin-Magniette
Plant Journal, 2011, 67 (4), pp.691-700. ⟨10.1111/j.1365-313X.2011.04628.x⟩
Article dans une revue hal-02645621v1
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Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

Patricia P. Faivre-Rampant , Isabelle Lesur , Clément Boussardon , Frederique Bitton , Marie-Laure Martin-Magniette
BMC Genomics, 2011, 12, 13 p. ⟨10.1186/1471-2164-12-292⟩
Article dans une revue hal-02646702v1

Letter to the Editor

Gilles Celeux , Marie-Laure Martin-Magniette , Cathy Maugis , Raftery Adrian
Journal of the American Statistical Association, 2011, 106, pp.383-383
Article dans une revue hal-00944081v1
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Genomic approach to study floral development genes in Rosa sp.

Annick Dubois , Arnaud A. Remay , Olivier Raymond , Sandrine Balzergue , Aurélie Chauvet
PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩
Article dans une revue hal-00753396v1

Letter to the editor: ''{A} framework for feature selection in clustering''

Gilles Celeux , Marie-Laure Martin-Magniette , Cathy Maugis , Adrian E. Raftery
Journal of the American Statistical Association, 2011, 106 (493), pp.383. ⟨10.1198/jasa.2011.tm10681⟩
Article dans une revue hal-00666845v1
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Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.

David Cohen , Marie-Béatrice Bogeat-Triboulot , Emilie Tisserant , Sandrine Balzergue , Marie-Laure Martin-Magniette
BMC Genomics, 2010, 11 (1), pp.630. ⟨10.1186/1471-2164-11-630⟩
Article dans une revue inserm-00663875v1

Transcriptomic Analysis Highlights Time-specific Embryonic Adaptation of Mice to the Lack of PrP

Manal Khalife , Rachel Young , Sead Chadi , Sandrine Le Guillou , Lucas Lefevre
Prion, 2010, 4 (3), Non spécifié. ⟨10.4161/pri.12773⟩
Article dans une revue hal-03339362v1
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Estimation of the hazard function in a semiparametric model with covariate measurement error

Marie-Laure Martin-Magniette , Marie-Luce Taupin
ESAIM: Probability and Statistics, 2009, 13, pp.87-114. ⟨10.1051/ps:2008004⟩
Article dans une revue hal-00480192v1
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Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée

Caroline Berard , Marie-Laure Martin-Magniette , Alexandra To , François Roudier , Vincent Colot
La revue MODULAD, 2009, 40, pp.53-68
Article dans une revue hal-01197565v1

Identification of germinal disk region derived genes potentially involved in hen fertility

Sébastien Elis , Elisabeth Blesbois , Isabelle Couty , Sandrine Balzergue , Marie-Laure Martin-Magniette
Molecular Reproduction and Development, 2009, 76 (11), pp.1043-1055. ⟨10.1002/mrd.21062⟩
Article dans une revue hal-02666532v1
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Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins

Cathy Maugis , Marie-Laure Martin-Magniette , Jean-Philippe Tamby , Jean-Pierre Renou , Alain Lecharny
La revue MODULAD, 2009, 40, pp.69-80
Article dans une revue hal-01197529v1
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Search for the genes involved in oocyte maturation and early embryo development in the hen

Sébastien Elis , Florence Batellier , Isabelle Couty , Sandrine Balzergue , Marie-Laure Martin-Magniette
BMC Genomics, 2008, 9, pp.1-20. ⟨10.1186/1471-2164-9-110⟩
Article dans une revue hal-02666483v1
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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5

Moussa Benhamed , Marie-Laure Martin-Magniette , Ludivine Taconnat , Frederique Bitton , Caroline Servet
Plant Journal, 2008, 56 (3), pp.493-504. ⟨10.1111/j.1365-313X.2008.03606.x⟩
Article dans une revue hal-02659090v1

Transcriptional and Metabolic Adjustments in ADP-Glucose pyrophosphorylase -deficient bt2 Maize kernels

Magalie Cossegal , Pierre Chambrier , Sylvie Mbelo , S. Balzergue , Marie-Laure Martin-Magniette
Plant Physiology, 2008, 146 (4), pp.1553-1570. ⟨10.1104/pp.107.112698⟩
Article dans une revue hal-00412597v1

Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula.

Sandrine Ruffel , Sandra Freixes , Sandrine Balzergue , Pascal Tillard , Christian Jeudy
Plant Physiology, 2008, 146 (4), pp.2020-2035. ⟨10.1104/pp.107.115667⟩
Article dans une revue hal-00275798v1
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Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection

Maria Navajas , Alain Migeon , C. Alaux , Marie-Laure Martin-Magniette , G.E. Robinson
BMC Genomics, 2008, 9, pp.301. ⟨10.1186/1471-2164-9-301⟩
Article dans une revue hal-02659274v1
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Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27

Franziska Turck , François Roudier , Sara Farrona , Marie-Laure Martin-Magniette , Elodie Guillaume
PLoS Genetics, 2007, 3 (6), pp.855-866. ⟨10.1371/journal.pgen.0030086⟩
Article dans une revue hal-02663914v1
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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome

Sebastien S. Aubourg , Marie-Laure Martin-Magniette , Veronique V. Brunaud , Ludivine Taconnat , Frederique Bitton
BMC Genomics, 2007, 8 (401), pp.1-9. ⟨10.1186/1471-2164-8-401⟩
Article dans une revue hal-02668276v1
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Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.

Fanny Ramel , Cécile Sulmon , Francisco Cabello-Hurtado , Ludivine Taconnat , Marie-Laure Martin-Magniette
BMC Genomics, 2007, 8, pp.450. ⟨10.1186/1471-2164-8-450⟩
Article dans une revue hal-00264268v1

Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis

Fabien Jammes , Philippe Lecomte , Janice de Almeida Engler , Frederique Bitton , Marie-Laure Martin-Magniette
Plant Journal, 2005, 44 (3), pp.447-458. ⟨10.1111/j.1365-313X.2005.02532.x⟩
Article dans une revue hal-02682347v1
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Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

Claire Lurin , Charles Andres , Sebastien Aubourg , M. Bellaoui , Frédérique Bitton
The Plant cell, 2004, 16 (7), pp.1-15
Article dans une revue hal-02679636v1

Clustering of co-expressed genes

Andrea Rau , Marie-Laure Magniette , Cathy Maugis-Rabusseau
Model Choice and Model Aggregation, Editions Technip, 372 p., 2017, 9782710811770
Chapitre d'ouvrage hal-02789928v1

Techniques statistique pour l’analyse du transcriptome

Stephane Robin , Marie-Laure Magniette
Informatique pour l’analyse du transcriptome, Editions Lavoisier, 320 p., 2004
Chapitre d'ouvrage hal-01222881v1