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Expression of cell-wall related genes is highly variable and correlates with sepal morphology
Diego A Hartasánchez
,
Annamaria Kiss
,
Virginie Battu
,
Charline Soraru
,
Abigail Delgado-Vaquera
Article dans une revue
hal-04248384v1
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Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize
Yacine Djabali
,
Renaud Rincent
,
Marie-Laure Martin
,
Mélisande Blein-Nicolas
Article dans une revue
hal-04002996v2
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A localized osmotic stress activates systemic responses to N-limitation in Medicago truncatula-Sinorhizobium symbiotic plants
Marie-Laure Martin
,
Marjorie Pervent
,
Ilana Lambert
,
Stefano Colella
,
Mathilde Tancelin
Article dans une revue
hal-04276739v1
|
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A cell wall-associated gene network shapes leaf boundary domains
Nathalie Bouré
,
Alexis Peaucelle
,
Magali Goussot
,
Bernard Adroher
,
Ludivine Soubigou-Taconnat
Article dans une revue
hal-03737566v1
|
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Error rate control for classification rules in multiclass mixture models
Tristan Mary-Huard
,
Vittorio Perduca
,
Marie-Laure Martin-Magniette
,
Gilles Blanchard
Article dans une revue
hal-04421501v1
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Fusarium graminearum infection strategy in wheat involves a highly conserved genetic program that controls the expression of a core effectome
Florian Rocher
,
Tarek Alouane
,
Géraldine Philippe
,
Marie-Laure Martin
,
Philippe Label
Article dans une revue
hal-03583788v1
|
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A comprehensive map of preferentially located motifs reveals distinct proximal cis -regulatory elements in plants
Julien Rozière
,
Cécile Guichard
,
Véronique Brunaud
,
Marie-Laure Martin
,
Sylvie Coursol
Article dans une revue
hal-04400803v1
|
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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
Kevin Baudry
,
Christine Paysant-Le Roux
,
Stefano Colella
,
Benoît Castandet
,
Marie-Laure Martin-Magniette
Journal of visualized experiments : JoVE, 2022, 185, pp.e62566. ⟨10.3791/62566⟩
Article dans une revue
hal-04274577v1
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Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants
Federica de Marco
,
Brigitte Batailler
,
Michael R. Thorpe
,
Frédérique Razan
,
Rozenn Le Hir
Article dans une revue
hal-02935915v1
|
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Error rate control for classification rules in multiclass mixture models
Tristan Mary-Huard
,
Vittorio Perduca
,
Marie-Laure Martin-Magniette
,
Gilles Blanchard
Article dans une revue
hal-03357461v1
|
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Systemic control of nodule formation by plant nitrogen demand requires autoregulation-dependent and independent mechanisms
Marjorie Pervent
,
Ilana Lambert
,
Marc Tauzin
,
Alicia Karouani
,
Martha Nigg
Article dans une revue
hal-03596911v1
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A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene
Tan-Trung Nguyen
,
Noelya Planchard
,
Jennifer Dahan
,
Nadège Arnal
,
Sandrine Balzergue
Article dans une revue
hal-03236517v1
|
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Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression
Benjamin Vittrant
,
Alain Bergeron
,
Oscar Eduardo Molina
,
Mickael Leclercq
,
Xavier-Philippe Légaré
Article dans une revue
hal-03219229v1
|
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Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency
Titouan Bonnot
,
Pierre Martre
,
Victor Hatte
,
Mireille Dardevet
,
Philippe Leroy
Article dans une revue
hal-02553742v1
|
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Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer
Benjamin Vittrant
,
Mickael Leclercq
,
Marie-Laure Martin-Magniette
,
Colin Collins
,
Alain Bergeron
Article dans une revue
hal-03269716v1
|
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The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis
Fabien Chardon
,
Gwendal Cueff
,
Etienne Delannoy
,
Fabien Aubé
,
Aurélia Lornac
Article dans une revue
hal-02959209v1
|
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Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling
Ilana Lambert
,
Marjorie Pervent
,
Antoine Le Quéré
,
Gilles Clement
,
Marc Tauzin
Article dans une revue
hal-02921428v1
|
|
DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Ilana Lambert
,
Christine Paysant-Le Roux
,
Stefano Colella
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02921433v1
|
|
Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development
Amélie Andres Robin
,
Mathieu C Reymond
,
Géraldine Brunoud
,
Martin-Magniette Marie-Laure
,
Françoise Moneger
Article dans une revue
hal-03068443v1
|
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Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation
Thomas Blein
,
Coline Balzergue
,
Thomas Roulé
,
Marc Gabriel
,
Laetitia Scalisi
Article dans une revue
cea-02962421v1
|
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Gene expression predictions and networks in natural populations supports the omnigenic theory
Aurélien Chateigner
,
Marie-Claude Lesage-Descauses
,
Odile Rogier
,
Véronique Jorge
,
Jean-Charles Leplé
Article dans une revue
hal-02902844v1
|
|
Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection
Simon Klau
,
Marie-Laure Martin-Magniette
,
Anne-Laure Boulesteix
,
Sabine Hoffmann
Article dans une revue
hal-02618372v1
|
|
Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor
Clément Boussardon
,
Marie-Laure Martin-Magniette
,
Béatrice Godin
,
Abdelilah Benamar
,
Benjamin Vittrant
Article dans une revue
hal-02557423v1
|
|
Large-Scale Automatic Feature Selection for Biomarker Discovery in High-Dimensional OMICs Data
Mickael Leclercq
,
Benjamin Vittrant
,
Marie-Laure Magniette
,
Marie Pier Scott Boyer
,
Olivier Perin
Article dans une revue
hal-02623625v1
|
|
In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi
Félix Lallemand
,
Marie-Laure Martin-Magniette
,
François Gilard
,
Bertrand Gakière
,
Alexandra Launay-Avon
Article dans une revue
hal-02617745v1
|
|
A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize
Clément Cuello
,
Aurélie Baldy
,
Véronique Brunaud
,
Johann Joets
,
Etienne Delannoy
Article dans une revue
hal-02429157v1
|
|
Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo
Kaori Sakai
,
Ludivine Taconnat
,
Néro Borrega
,
Jennifer Yansouni
,
Véronique Brunaud
Article dans une revue
hal-02625394v1
|
|
Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat
Elodie Rey
,
Michaël M. Abrouk
,
Gabriel Keeble-Gagnère
,
Miroslava Karafiatova
,
Jan Vrána
Article dans une revue
hal-02621747v1
|
|
Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness
Pascal Montoro
,
Shuangyang Wu
,
Bénédicte Favreau
,
Eva Herlinawati
,
Cécile Labrune
Article dans une revue
hal-02624945v1
|
|
Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period (vol 252, pg 347, 2016)
Zhazira Yesbergenova-Cuny
,
Sylvie Dinant
,
Marie-Laure Martin-Magniette
,
Isabelle Quillere
,
Patrick P. Armengaud
Article dans une revue
hal-02618059v1
|
|
Nitrogen limitation alters the response of specific genes to biotic stress
Mahsa Farjad
,
Martine Rigault
,
Stephanie Pateyron
,
Marie-Laure Martin-Magniette
,
Annemarie Krapp
Article dans une revue
hal-02625219v1
|
|
Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field
Fabrice Roux
,
Tristan Mary-Huard
,
Elise Barillot
,
Estelle Wenes
,
Lucy Rosalie L. R. Botran
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩
Article dans une revue
hal-01294000v1
|
|
Genetic variability of the phloem sap metabolite content of maize ([i]Zea mays[/i] L.) during the kernel-filling period
Zhazira Yesbergenova-Cuny
,
Sylvie Dinant
,
Marie-Laure Magniette
,
Isabelle Quillere
,
Patrick Armengaud
Article dans une revue
hal-01363555v1
|
|
Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis
Guillem Rigaill
,
Sandrine Balzergue
,
Véronique Brunaud
,
Eddy Blondet
,
Andrea Rau
Article dans une revue
hal-01595551v1
|
|
Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies
Hélène Kiefer
,
Luc Jouneau
,
Evelyne E. Campion
,
Delphine Rousseau-Ralliard
,
Thibaut Larcher
Article dans une revue
hal-02633915v1
|
|
Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models
Andrea Rau
,
Cathy Maugis-Rabusseau
,
Marie-Laure Magniette
,
Gilles Celeux
Article dans une revue
hal-01108821v2
|
|
Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences
Nicolas Frei Dit Frey
,
Anna Victoria Garcia
,
Jean Bigeard
,
Rim Zaag
,
Eduardo Bueso
Article dans une revue
hal-02631808v1
|
|
Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering
Gilles Celeux
,
Marie-Laure Martin-Magniette
,
Cathy Maugis
,
Adrian E. Raftery
Journal de la Société Française de Statistique, 2014, 155 (2), pp.57-71
Article dans une revue
hal-00943473v1
|
|
Hidden Markov Models with mixtures as emission distributions
Stevenn Volant
,
Caroline Bérard
,
Marie-Laure Martin-Magniette
,
Stéphane Robin
Article dans une revue
pasteur-02612867v1
|
|
Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana
Ana Victoria Garcia Malervi
,
Amélie Charrier
,
Adam Schikora
,
Jean Bigeard
,
Stephanie Pateyron
Article dans une revue
hal-01197624v1
|
|
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
Caroline Berard
,
Michael Seifert
,
Tristan Mary-Huard
,
Marie-Laure Magniette
Article dans une revue
hal-01190745v1
|
|
A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments
David Rengel
,
Sandrine Arribat
,
Pierre Maury
,
Marie-Laure Martin-Magniette
,
Thibault Hourlier
Article dans une revue
hal-02644423v1
|
|
SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values
Cathy Maugis-Rabusseau
,
Martin-Magniette Marie-Laure
,
Pelletier Sandra
Journal de la Société Française de Statistique, 2012, 15 (2), pp.21-36
Article dans une revue
hal-00972003v1
|
|
Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency
Stevenn Volant
,
Marie-Laure Magniette Martin-Magniette
,
Stephane S. Robin
Article dans une revue
hal-01000046v1
|
|
Variable selection in model-based discriminant analysis
Cathy Maugis
,
Gilles Celeux
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-00666826v1
|
|
Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
Ali M. Banaei Moghaddam
,
François Roudier
,
Michael Seifert
,
Caroline Bérard
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02645621v1
|
|
Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
Patricia P. Faivre-Rampant
,
Isabelle Lesur
,
Clément Boussardon
,
Frederique Bitton
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02646702v1
|
|
Letter to the Editor
Gilles Celeux
,
Marie-Laure Martin-Magniette
,
Cathy Maugis
,
Raftery Adrian
Journal of the American Statistical Association, 2011, 106, pp.383-383
Article dans une revue
hal-00944081v1
|
|
Genomic approach to study floral development genes in Rosa sp.
Annick Dubois
,
Arnaud A. Remay
,
Olivier Raymond
,
Sandrine Balzergue
,
Aurélie Chauvet
Article dans une revue
hal-00753396v1
|
|
Letter to the editor: ''{A} framework for feature selection in clustering''
Gilles Celeux
,
Marie-Laure Martin-Magniette
,
Cathy Maugis
,
Adrian E. Raftery
Article dans une revue
hal-00666845v1
|
|
Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.
David Cohen
,
Marie-Béatrice Bogeat-Triboulot
,
Emilie Tisserant
,
Sandrine Balzergue
,
Marie-Laure Martin-Magniette
Article dans une revue
inserm-00663875v1
|
|
Transcriptomic Analysis Highlights Time-specific Embryonic Adaptation of Mice to the Lack of PrP
Manal Khalife
,
Rachel Young
,
Sead Chadi
,
Sandrine Le Guillou
,
Lucas Lefevre
Article dans une revue
hal-03339362v1
|
|
Estimation of the hazard function in a semiparametric model with covariate measurement error
Marie-Laure Martin-Magniette
,
Marie-Luce Taupin
Article dans une revue
hal-00480192v1
|
|
Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée
Caroline Berard
,
Marie-Laure Martin-Magniette
,
Alexandra To
,
François Roudier
,
Vincent Colot
La revue MODULAD, 2009, 40, pp.53-68
Article dans une revue
hal-01197565v1
|
|
Identification of germinal disk region derived genes potentially involved in hen fertility
Sébastien Elis
,
Elisabeth Blesbois
,
Isabelle Couty
,
Sandrine Balzergue
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02666532v1
|
|
Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins
Cathy Maugis
,
Marie-Laure Martin-Magniette
,
Jean-Philippe Tamby
,
Jean-Pierre Renou
,
Alain Lecharny
La revue MODULAD, 2009, 40, pp.69-80
Article dans une revue
hal-01197529v1
|
|
Search for the genes involved in oocyte maturation and early embryo development in the hen
Sébastien Elis
,
Florence Batellier
,
Isabelle Couty
,
Sandrine Balzergue
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02666483v1
|
|
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
Moussa Benhamed
,
Marie-Laure Martin-Magniette
,
Ludivine Taconnat
,
Frederique Bitton
,
Caroline Servet
Article dans une revue
hal-02659090v1
|
|
Transcriptional and Metabolic Adjustments in ADP-Glucose pyrophosphorylase -deficient bt2 Maize kernels
Magalie Cossegal
,
Pierre Chambrier
,
Sylvie Mbelo
,
S. Balzergue
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-00412597v1
|
|
Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula.
Sandrine Ruffel
,
Sandra Freixes
,
Sandrine Balzergue
,
Pascal Tillard
,
Christian Jeudy
Article dans une revue
hal-00275798v1
|
|
Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection
Maria Navajas
,
Alain Migeon
,
C. Alaux
,
Marie-Laure Martin-Magniette
,
G.E. Robinson
Article dans une revue
hal-02659274v1
|
|
Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27
Franziska Turck
,
François Roudier
,
Sara Farrona
,
Marie-Laure Martin-Magniette
,
Elodie Guillaume
Article dans une revue
hal-02663914v1
|
|
Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome
Sebastien S. Aubourg
,
Marie-Laure Martin-Magniette
,
Veronique V. Brunaud
,
Ludivine Taconnat
,
Frederique Bitton
Article dans une revue
hal-02668276v1
|
|
Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.
Fanny Ramel
,
Cécile Sulmon
,
Francisco Cabello-Hurtado
,
Ludivine Taconnat
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-00264268v1
|
|
Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis
Fabien Jammes
,
Philippe Lecomte
,
Janice de Almeida Engler
,
Frederique Bitton
,
Marie-Laure Martin-Magniette
Article dans une revue
hal-02682347v1
|
|
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
Claire Lurin
,
Charles Andres
,
Sebastien Aubourg
,
M. Bellaoui
,
Frédérique Bitton
The Plant cell, 2004, 16 (7), pp.1-15
Article dans une revue
hal-02679636v1
|