Cophylogeny Reconstruction via an Approximate Bayesian Computation
Christian Baudet
,
Béatrice Donati
,
Blerina Sinaimeri
,
Pierluigi Crescenzi
,
Christian Gautier
,
et al.
Article dans une revue
hal-01092972v1
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A Comparative Study of Bases for Motif Inference
Nadia Pisanti
,
Maxime Crochemore
,
Roberto Grossi
,
Marie-France Sagot
String Algorithmics , 2005, Londres, United Kingdom. pp.195-225
Communication dans un congrès
hal-00620115v1
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A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum
Nadia Pisanti
,
Maxime Crochemore
,
Roberto Grossi
,
Marie-France Sagot
International Symposium on Mathematical Foundations of Computer Science 2003 , Aug 2003, Bratislava, Slovakia. pp.622-632,
⟨10.1007/978-3-540-45138-9_56⟩
Communication dans un congrès
hal-00620116v1
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Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification
Laurent Marsan
,
Marie-France Sagot
Journal of Computational Biology , 2001, 7 (1), pp.345-360
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hal-00619684v1
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Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses
Cecilia C Klein
,
João M P Alves
,
Myrna G Serrano
,
Gregory A Buck
,
Ana Tereza R Vasconcelos
,
et al.
Article dans une revue
hal-00922587v1
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Reaction Motifs in Metabolic Networks
Vincent Lacroix
,
Cristina Gomes Fernandes
,
Marie-France Sagot
RR-5563, INRIA. 2005, pp.14
Rapport
inria-00070443v1
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Exploring and Visualising Spaces of Tree Reconciliations
Katharina Huber
,
Vincent Moulton
,
Marie-France Sagot
,
Blerina Sinaimeri
Article dans une revue
hal-01964682v1
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
Gustavo Akio Tominaga Sacomoto
,
Vincent Lacroix
,
Marie-France Sagot
Workshop on Algorithms in Bioinformatics (WABI) , Sep 2013, Nice, France
Communication dans un congrès
hal-00842982v1
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Motif search in graphs: application to metabolic networks.
Vincent Lacroix
,
C.G. Fernandes
,
M.-F. Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics , 2006, 3 - n°4, pp.360-368
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hal-00427984v1
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A Double Combinatorial Approach to Discovering Patterns in Biological Sequences
M.-F. Sagot
,
Alain Viari
incollection , 1996, 1075, pp.186-208
Article dans une revue
hal-00435048v1
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs
Gustavo Sacomoto
,
Vincent Lacroix
,
Marie‑france Sagot
Article dans une revue
hal-01170399v1
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EUCALYPT: efficient tree reconciliation enumerator
Beatrice Donati
,
Christian Baudet
,
Blerina Sinaimeri
,
Pierluigi Crescenzi
,
Marie-France Sagot
Article dans une revue
hal-01092977v1
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BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data
Carol Moraga
,
Evelyn Sanchez
,
Mariana Galvão Ferrarini
,
Rodrigo A Gutierrez
,
Elena A Vidal
,
et al.
Article dans une revue
hal-03831360v1
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Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.
Lilia Brinza
,
José Viñuelas
,
Ludovic Cottret
,
Federica Calevro
,
Yvan Rahbé
,
et al.
Article dans une revue
istex
hal-00445861v1
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Les réseaux métaboliques et génétiques
H. Charles
,
G. Beslon
,
Federica Calevro
,
Jean-François Boulicaut
,
J.M. Fayard
,
et al.
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" , 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Communication dans un congrès
hal-00391271v1
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum
Hubert Charles
,
Federica Calevro
,
Stefano Colella
,
Jean-Michel Fayard
,
Gérard Febvay
,
et al.
Séminaire INRA AgroBI , 2008, Bordeaux, décembre 2008, France
Communication dans un congrès
hal-02824972v1
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Absence of a core metabolic network common to symbiotic bacteria
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Hubert Charles
,
Christian Gautier
,
Ana Tereza Ribeiro de Vasconcelos
,
et al.
6. Meeting GDRE-RA Comparative genomics , Nov 2011, Lyon, France. 33 diapositives
Communication dans un congrès
hal-02806316v1
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Development of the Acyrthosiphon pisum Cyc database (ApsCyc) : from genome sequence to metabolic network analyses
Augusto Vellozo
,
Stefano Colella
,
Ludovic Cottret
,
Gérard Febvay
,
Federica Calevro
,
et al.
Integrative Post-Genomics - IPG'08 , 2008, Lyon, novembre 2008, France
Communication dans un congrès
hal-02821711v1
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Introduction to the Special Theme - Tackling Big Data in the Life Sciences
Roeland M.H. Merks
,
Marie-France Sagot
2016
Autre publication scientifique
hal-01576388v1
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Pattern inference under many guises
M.-F. Sagot
,
Y. Wakabayashi
incollection , 2003, --, pp.245-288
Article dans une revue
hal-00427466v1
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Occurrence probability of structured motifs in random sequences
S. Robin
,
J.J. Daudin
,
H. Richard
,
M.-F. Sagot
,
S. Schbath
Article dans une revue
hal-00427461v1
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New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data
Alice Julien-Laferriere
,
Gustavo Sacomoto
,
Rayan Chikhi
,
Erwan Scaon
,
David P. Parsons
,
et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , Jul 2013, Toulouse, France
Communication dans un congrès
hal-02069363v1
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Algorithms for the quantitative Lock/Key model of cytoplasmic incompatibility
Tiziana Calamoneri
,
Mattia Gastaldello
,
Arnaud Mary
,
Marie-France Sagot
,
Blerina Sinaimeri
Article dans une revue
hal-02917569v1
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On Bubble Generators in Directed Graphs
Vicente Acuña
,
Roberto Grossi
,
Giuseppe F. Italiano
,
Leandro Lima
,
Romeo Rizzi
,
et al.
Article dans une revue
hal-02284946v1
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A first approach to finding common motifs with gaps,
Costas Iliopoulos
,
J. Mchugh
,
Pierre Peterlongo
,
Nadia Pisanti
,
W. Rytter
,
et al.
International Journal of Foundations of Computer Science , 2005, 16 (6), pp.1145--1155
Article dans une revue
inria-00328042v1
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Lossless Filter for Long Multiple Repetitions with Edit Distance
Pierre Peterlongo
,
Nadia Pisanti
,
Alair Peirera Do Lago
,
Marie-France Sagot
2006
Rapport
hal-00627831v1
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Promoter sequences and algorithmical methods for identifying them
A. Vanet
,
L. Marsan
,
M.-F. Sagot
Research in Microbiology , 1999, 150, pp.779-799
Article dans une revue
hal-00428461v1
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Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
Amélie Véron
,
Claire Lemaitre
,
Christian Gautier
,
Vincent Lacroix
,
Marie-France Sagot
Article dans une revue
hal-00784423v1
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Mycoplasma non-coding RNA: identification of small RNAs and targets
Franciele Maboni Siqueira
,
Guilherme Loss de Morais
,
Susan Higashi
,
Laura Scherer Beier
,
Gabriela Merker Breyer
,
et al.
Article dans une revue
hal-01393122v1
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Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi
Nuno Mendes
,
Ana Freitas
,
Ana Vasconcelos
,
Marie-France Sagot
Article dans une revue
hal-00784432v1
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