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209 résultats
Orphan gene finding - An exon assembly approachTheoretical Computer Science, 2003, 290 (1), pp.1407-1431
Article dans une revue
hal-00427367v2
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MultiPus: Conception de communautés microbiennes pour la production de composés d'intérêtJobim, Jun 2016, Lyon, France
Poster de conférence
hal-01394119v1
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Bases of motifs for generating repeated patterns with wild cardsIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2, pp.40-50. ⟨10.1109/TCBB.2005.5⟩
Article dans une revue
hal-00427800v1
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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposureBioinformatics, 2014, 30 (1), pp.61-70. ⟨10.1093/bioinformatics/btt597⟩
Article dans une revue
hal-00922567v1
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ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods5th Annual Arthropod Genomics Symposium "Arthropod Genomics 2011: Exploring Diversity, Relating Similarity", Jun 2011, Kansas City, United States
Communication dans un congrès
hal-00748601v1
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On Bubble Generators in Directed GraphsWG 2017 - 43rd International Workshop on Graph-Theoretic Concepts in Computer Science, Jun 2017, Eindhoven, Netherlands. pp.18-31, ⟨10.1007/978-3-319-68705-6_2⟩
Communication dans un congrès
hal-01647516v1
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequenceNucleic Acids Research, 2016, ⟨10.1093/nar/gkw655⟩
Article dans une revue
hal-01352586v1
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Lossless filter for multiple repetitions with Hamming distanceJournal of Discrete Algorithms, 2008, 6 (3), pp.497-509. ⟨10.1016/j.jda.2007.03.003⟩
Article dans une revue
inria-00179731v1
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Indexing gapped-factors using a treeInternational Journal of Foundations of Computer Science, 2008, 19 (1), pp.71-87. ⟨10.1142/S0129054108005541⟩
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inria-00179719v1
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Identifying SNPs without a reference genome by comparing raw readsString Processing and Information Retrieval, Oct 2010, Los Cabos, Mexico. pp.147-158, ⟨10.1007/978-3-642-16321-0_14⟩
Communication dans un congrès
inria-00514887v1
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Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of ToxoplasmosisMSphere, 2021, 6 (1), ⟨10.1128/mSphere.01002-20⟩
Article dans une revue
hal-03104886v1
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Sorting by reversals in subquadratic time[Research Report] RR-5097, INRIA. 2004
Rapport
inria-00071486v1
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Some approximation results for the maximum agreement forest problemApproximation, Randomization and Combinatorial Optimization: Algorithms and Techniques (APPROX RANDOM 2001), 2001, Berkeley, Californie, USA, United States. pp.159-169
Communication dans un congrès
hal-00620120v1
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Identifying satellites and periodic repetitions in biological sequencesJournal of Computational Biology, 1998, 5, pp.539-554
Article dans une revue
hal-00428496v1
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Finding flexible patterns in a text - An application to 3D matchingComputer Applications in the Biosciences, 1995, 11, pp.59-70
Article dans une revue
hal-00698198v1
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OptPipe - a pipeline for optimizing metabolic engineering targetsBMC Systems Biology, 2017, 11, pp.1-9. ⟨10.1186/s12918-017-0515-0⟩
Article dans une revue
hal-01672905v1
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Current methods of gene prediction their strengths and weaknessesNucleic Acids Research, 2002, 30, pp.4103-4117
Article dans une revue
hal-00427288v1
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Gene finding in eukaryotesincollection, 2002, --, pp.27-43
Article dans une revue
hal-00427230v1
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Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfersBMC Evolutionary Biology, 2013, 13 (1), pp.190. ⟨10.1186/1471-2148-13-190⟩
Article dans une revue
hal-00868763v1
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Incremental complexity of a bi-objective hypergraph transversal problemFundamentals of Computation Theory (FCT2015), Aug 2015, Gdansk, Poland. pp.202-213, ⟨10.1007/978-3-319-22177-9_16⟩
Communication dans un congrès
hal-01149392v1
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Efficiently listing bounded length st-pathsTwenty-Fifth International Workshop on Combinatorial Algorithms (IWOCA 2014), Sep 2014, Duluth, Minnesota, France. in press
Communication dans un congrès
hal-01091924v1
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Evolution des organismes bactériensJournée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Communication dans un congrès
hal-00391156v1
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Enumerating precursor sets of target metabolites in a metabolic network8th Workshop on Algorithms in Bioinformatics (WABI), 2007, Karlsruhe (Allemagne), septembre 2008, France. pp.233-244
Communication dans un congrès
hal-00391291v1
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisumSéminaire INRA AgroBI, 2008, Bordeaux (France), décembre 2008, France. pp.1-1
Communication dans un congrès
hal-00391273v1
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Recherche de précurseurs dans un réseau métaboliqueRéseaux d'interaction : analyse, modélisation et simulation (RIAMS), 2007, Villeurbanne (France), novembre 2007, France. pp.1-1
Communication dans un congrès
hal-00391288v1
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Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identificationJournal of Computational Biology, 2001, 7 (1), pp.345-360
Article dans une revue
hal-00619684v1
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A Comparative Study of Bases for Motif InferenceString Algorithmics, 2005, Londres, United Kingdom. pp.195-225
Communication dans un congrès
hal-00620115v1
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A basis of tiling motifs for generating repeated patterns and its complexity for higher quorumInternational Symposium on Mathematical Foundations of Computer Science 2003, Aug 2003, Bratislava, Slovakia. pp.622-632, ⟨10.1007/978-3-540-45138-9_56⟩
Communication dans un congrès
hal-00620116v1
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Cophylogeny Reconstruction via an Approximate Bayesian ComputationSystematic Biology, 2015, 64 (3), pp.416-431. ⟨10.1093/sysbio/syu129⟩
Article dans une revue
hal-01092972v1
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Motif search in graphs: application to metabolic networks.IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006, 3 - n°4, pp.360-368
Article dans une revue
hal-00427984v1
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