Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
Paulo Vieira Milreu
,
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Vicente Acuña
,
Etienne E. Birmelé
,
et al.
Article dans une revue
hal-00922567v1
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ArthropodaCyc: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods
Patrice Baa-Puyoulet
,
Augusto F Vellozo
,
Jaime Huerta-Cepas
,
Gérard Febvay
,
T. Gabaldon
,
et al.
5th Annual Arthropod Genomics Symposium "Arthropod Genomics 2011: Exploring Diversity, Relating Similarity" , Jun 2011, Kansas City, United States
Communication dans un congrès
hal-00748601v1
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On Bubble Generators in Directed Graphs
Vicente Acuna
,
Roberto Grossi
,
Giuseppe F Italiano
,
Leandro Lima
,
Romeo Rizzi
,
et al.
WG 2017 - 43rd International Workshop on Graph-Theoretic Concepts in Computer Science , Jun 2017, Eindhoven, Netherlands. pp.18-31,
⟨10.1007/978-3-319-68705-6_2⟩
Communication dans un congrès
hal-01647516v1
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Lossless filter for multiple repetitions with Hamming distance
Pierre Peterlongo
,
Nadia Pisanti
,
Frédéric Boyer
,
Alair Pereira Do Lago
,
Marie-France Sagot
Article dans une revue
inria-00179731v1
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Indexing gapped-factors using a tree
Pierre Peterlongo
,
Julien Allali
,
Marie-France Sagot
Article dans une revue
inria-00179719v1
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Identifying SNPs without a reference genome by comparing raw reads
Pierre Peterlongo
,
Nicolas Schnel
,
Nadia Pisanti
,
Marie-France Sagot
,
Vincent Lacroix
Communication dans un congrès
inria-00514887v1
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Dichloroacetate and Pyruvate Metabolism: Pyruvate Dehydrogenase Kinases as Targets Worth Investigating for Effective Therapy of Toxoplasmosis
Mariana Galvão Ferrarini
,
Lindice Mitie Nisimura
,
Richard Marcel Bruno Moreira Girard
,
Mayke Bezerra Alencar
,
Mariana Sayuri Ishikawa Fragoso
,
et al.
Article dans une revue
hal-03104886v1
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Sorting by reversals in subquadratic time
Eric Tannier
,
Marie-France Sagot
[Research Report] RR-5097, INRIA. 2004
Rapport
inria-00071486v1
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Some approximation results for the maximum agreement forest problem
E. M. Rodrigues
,
Marie-France Sagot
,
Y. Wakabayashi
Approximation, Randomization and Combinatorial Optimization: Algorithms and Techniques (APPROX RANDOM 2001) , 2001, Berkeley, Californie, USA, United States. pp.159-169
Communication dans un congrès
hal-00620120v1
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Identifying satellites and periodic repetitions in biological sequences
M.-F. Sagot
,
E.W. Myers
Journal of Computational Biology , 1998, 5, pp.539-554
Article dans une revue
hal-00428496v1
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Finding flexible patterns in a text - An application to 3D matching
M-F. Sagot
,
Alain Viari
,
J. Pothier
,
H. Soldano
Computer Applications in the Biosciences , 1995, 11, pp.59-70
Article dans une revue
hal-00698198v1
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OptPipe - a pipeline for optimizing metabolic engineering targets
András Hartmann
,
Ana Vila-Santa
,
Nicolai Kallscheuer
,
Michael Vogt
,
Alice Julien-Laferrière
,
et al.
Article dans une revue
hal-01672905v1
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Current methods of gene prediction their strengths and weaknesses
C. Mathé
,
M.-F. Sagot
,
Thomas Schiex
,
P. Rouzé
Nucleic Acids Research , 2002, 30, pp.4103-4117
Article dans une revue
hal-00427288v1
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Gene finding in eukaryotes
C. Mathé
,
Thomas Schiex
,
P. Rouzé
,
P. Blayo
,
M.-F. Sagot
incollection , 2002, --, pp.27-43
Article dans une revue
hal-00427230v1
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Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers
João Alves
,
Cecilia Klein
,
Flávia Maia da Silva
,
André Costa-Martins
,
Myrna Serrano
,
et al.
Article dans une revue
hal-00868763v1
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Incremental complexity of a bi-objective hypergraph transversal problem
Ricardo Andrade
,
Etienne E. Birmelé
,
Arnaud Mary
,
Thomas Picchetti
,
Marie-France Sagot
Communication dans un congrès
hal-01149392v1
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Efficiently listing bounded length st-paths
Romeo Rizzi
,
Gustavo Sacomoto
,
Marie-France Sagot
Twenty-Fifth International Workshop on Combinatorial Algorithms (IWOCA 2014) , Sep 2014, Duluth, Minnesota, France. in press
Communication dans un congrès
hal-01091924v1
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Evolution des organismes bactériens
G. Beslon
,
Federica Calevro
,
H. Charles
,
J.M. Fayard
,
C. Knibbe
,
et al.
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" , 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Communication dans un congrès
hal-00391156v1
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Enumerating precursor sets of target metabolites in a metabolic network
L. Cottret
,
P.V. Milreu
,
Vicente Acuna
,
A. Marchetti-Spaccamela
,
F. Viduani Martinez
,
et al.
8th Workshop on Algorithms in Bioinformatics (WABI) , 2007, Karlsruhe (Allemagne), septembre 2008, France. pp.233-244
Communication dans un congrès
hal-00391291v1
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum
H. Charles
,
Federica Calevro
,
Stefano Colella
,
J.M. Fayard
,
G. Febvay
,
et al.
Séminaire INRA AgroBI , 2008, Bordeaux (France), décembre 2008, France. pp.1-1
Communication dans un congrès
hal-00391273v1
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Recherche de précurseurs dans un réseau métabolique
L. Cottret
,
Vicente Acuna
,
H. Charles
,
M.F. Sagot
Réseaux d'interaction : analyse, modélisation et simulation (RIAMS) , 2007, Villeurbanne (France), novembre 2007, France. pp.1-1
Communication dans un congrès
hal-00391288v1
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
Hélène Lopez-Maestre
,
Lilia Brinza
,
Camille Marchet
,
Janice Kielbassa
,
Sylvère Bastien
,
et al.
Article dans une revue
hal-01352586v1
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Orphan gene finding - An exon assembly approach
Philippe Blayo
,
Pierre Rouzé
,
Marie-France Sagot
Theoretical Computer Science , 2003, 290 (1), pp.1407-1431
Article dans une revue
hal-00427367v2
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Bases of motifs for generating repeated patterns with wild cards
Nadia Pisanti
,
Maxime Crochemore
,
Roberto Grossi
,
Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics , 2005, 2, pp.40-50.
⟨10.1109/TCBB.2005.5⟩
Article dans une revue
hal-00427800v1
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MultiPus: Conception de communautés microbiennes pour la production de composés d'intérêt
A Julien-Laferrière
,
Laurent Bulteau
,
D Parrot
,
A Marchetti-Spaccamela
,
L Stougie
,
et al.
Jobim , Jun 2016, Lyon, France
Poster de conférence
hal-01394119v1
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Exploration of the core metabolism of symbiotic bacteria
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Janice Kielbassa
,
Hubert Charles
,
Christian Gautier
,
et al.
Article dans une revue
hal-00784396v1
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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
Leandro Lima
,
Blerina Sinaimeri
,
Gustavo Sacomoto
,
Helene Lopez-Maestre
,
Camille Marchet
,
et al.
Article dans une revue
hal-01474524v1
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An asymmetric approach to preserve common intervals while sorting by reversals
Marília D.V. Braga
,
Christian Gautier
,
Marie-France Sagot
Article dans une revue
hal-00784445v1
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Lossless filter for multiple repeats with bounded edit distance
Pierre Peterlongo
,
Gustavo Akio Tominaga Sacomoto
,
Alair Pereira Do Lago
,
Nadia Pisanti
,
Marie-France Sagot
Article dans une revue
hal-00784457v1
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Enumeration of minimal stoichiometric precursor sets in metabolic networks
Ricardo Andrade
,
Martin Wannagat
,
Cecilia C. Klein
,
Vicente Acuña
,
Alberto Marchetti-Spaccamela
,
et al.
Article dans une revue
hal-01368653v1
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