Marie Doumic

Documents

Publications

	Multispecies cross-diffusions: from a nonlocal mean-field to a porous medium system without self-diffusion Marie Doumic , Sophie Hecht , Benoît Perthame , Diane Peurichard Journal of Differential Equations, inPress, 389, pp.228-256. ⟨10.1016/j.jde.2024.01.017⟩ Article dans une revue hal-04108050v2
	A mathematical model of p62-ubiquitin aggregates in autophagy Julia Delacour , Marie Doumic , Sascha Martens , Christian Schmeiser , Gabriele Zaffagnini Journal of Mathematical Biology, 2022, 84 (3), ⟨10.1007/s00285-021-01659-2⟩ Article dans une revue hal-02548223v1
	Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation Magali Tournus , Miguel Escobedo , Wei-Feng Xue , Marie Doumic PLoS Computational Biology, 2021, 17 (9), pp.e1008964. ⟨10.1371/journal.pcbi.1008964⟩ Article dans une revue hal-03131754v1
	Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae Hugo Martin , Marie Doumic , Maria Teresa Teixeira , Zhou Xu Cell & Bioscience, 2021, 11 (1), ⟨10.1186/s13578-021-00693-3⟩ Article dans une revue hal-03374435v1
	Estimating the division rate from indirect measurements of single cells Marie Doumic , Adélaïde Olivier , Lydia Robert Discrete and Continuous Dynamical Systems - Series B, 2020, 25 (10), pp.3931--3961. ⟨10.3934/dcdsb.2020078⟩ Article dans une revue hal-02175633v1
	The Division of Amyloid Fibrils: Systematic Comparison of Fibril Fragmentation Stability by Linking Theory with Experiments David Béal , Magali Tournus , Ricardo Marchante , Tracey Purton , David Smith iScience, 2020, 23 (9), ⟨10.1016/j.isci.2020.101512⟩ Article dans une revue hal-01966243v1
	A purely mechanical model with asymmetric features for early morphogenesis of rod-shaped bacteria micro-colony Marie Doumic , Sophie Hecht , Diane Peurichard Mathematical Biosciences and Engineering, 2020, 17 (6), http://aimspress.com/article/doi/10.3934/mbe.2020356. ⟨10.3934/mbe.2020356⟩ Article dans une revue hal-02865566v1
	Pressure Reveals Unique Conformational Features in Prion Protein Fibril Diversity Joan Torrent , Davy Martin , Sylvie Noinville , Yi Yin , Marie Doumic Scientific Reports, 2019, 9, pp.2802. ⟨10.1038/s41598-019-39261-8⟩ Article dans une revue hal-02057700v1
	Early stage prion assembly involves two subpopulations with different quaternary structures and a secondary templating pathway Angélique Igel-Egalon , Florent Laferrière , Mohammed Moudjou , Jan Bohl , Mathieu Mezache Communications Biology, 2019, 2 (1), pp.1-13. ⟨10.1038/s42003-019-0608-y⟩ Article dans une revue hal-02317910v1
	A bi-monomeric, nonlinear Becker-Döring-type system to capture oscillatory aggregation kinetics in prion dynamics Marie Doumic , Klemens Fellner , Mathieu Mezache , Human Rezaei Journal of Theoretical Biology, 2019, 480, pp.241--261. ⟨10.1016/j.jtbi.2019.08.007⟩ Article dans une revue hal-01863748v1
	Bidirectional sliding of two parallel microtubules generated by multiple identical motors Jun Allard , Marie Doumic , Alex Mogilner , Dietmar Oelz Journal of Mathematical Biology, 2019, ⟨10.1007/s00285-019-01369-w⟩ Article dans une revue hal-02181135v1
	Cyclic asymptotic behaviour of a population reproducing by fission into two equal parts Etienne Bernard , Marie Doumic , Pierre Gabriel Kinetic and Related Models , 2019, 12 (3), pp.551-571. ⟨10.3934/krm.2019022⟩ Article dans une revue hal-01363549v5
	Long-time asymptotics for polymerization models Juan Calvo , Marie Doumic , Benoît Perthame Communications in Mathematical Physics, 2018, 363 (1), pp.111-137. ⟨10.1007/s00220-018-3218-5⟩ Article dans une revue hal-01570292v2
	Estimating the division rate and kernel in the fragmentation equation Marie Doumic , Miguel Escobedo , Magali Tournus Annales de l'Institut Henri Poincaré C, Analyse non linéaire, 2018, 35 (7), pp.1847-1884. ⟨10.1016/j.anihpc.2018.03.004⟩ Article dans une revue hal-01501811v2
	Relative Entropy Method for Measure Solutions of the Growth-Fragmentation Equation Tomasz Dębiec , Marie Doumic , Piotr Gwiazda , Emil Wiedemann SIAM Journal on Applied Mathematics, 2018, 50 (6), pp.5811-5824 Article dans une revue hal-01762974v1
	Toward an integrated workforce planning framework using structured equations Marie Doumic , Benoît Perthame , Edouard Ribes , Delphine Salort , Nathan Toubiana European Journal of Operational Research, 2017, 262, ⟨10.1016/j.ejor.2017.03.076⟩ Article dans une revue hal-01343368v2
	The mechanism of monomer transfer between two structurally distinct PrP oligomers Aurora Armiento , Philippe Moireau , Davy Martin , Nad’a Lepejova , Marie Doumic PLoS ONE, 2017, 12 (7), ⟨10.1371/journal.pone.0180538⟩ Article dans une revue hal-01574346v1
	A numerical scheme for the early steps of nucleation-aggregation Models Harvey Thomas Banks , Marie Doumic , Carola Kruse Journal of Mathematical Biology, 2017, 74 (1-2), pp.259-287. ⟨10.1007/s00285-016-1026-0⟩ Article dans une revue hal-00954437v1
	Insights into the variability of nucleated amyloid polymerization by a minimalistic model of stochastic protein assembly Sarah Eugene , Wei-Feng Xue , Philippe Robert , Marie Doumic Journal of Chemical Physics, 2016, 144 (17), pp.12. ⟨10.1063/1.4947472⟩ Article dans une revue hal-01205549v3
	Asymptotics of Stochastic Protein Assembly Models Marie Doumic , Sarah Eugene , Philippe Robert SIAM Journal on Applied Mathematics, 2016, 76 (6), pp.20. ⟨10.1137/16M1066920⟩ Article dans une revue hal-01301266v1
	Estimation from Moments Measurements for Amyloid Depolymerisation Aurora Armiento , Marie Doumic , Philippe Moireau , Human Rezaei Journal of Theoretical Biology, 2016, 397, pp.68 - 88. ⟨10.1016/j.jtbi.2016.02.037⟩ Article dans une revue hal-01248255v1
	Time Asymptotics for a Critical Case in Fragmentation and Growth-Fragmentation Equations Marie Doumic , Miguel Escobedo Kinetic and Related Models , 2016, 9 (2), pp.47. ⟨10.3934/krm.2016.9.251⟩ Article dans une revue hal-01080361v3
	Information Content in Data Sets for a Nucleated-Polymerization Model H. T. Banks , Marie Doumic , Carola Kruse , Stephanie Prigent , H Rezaei Journal of Biological Dynamics, 2015, 9 (1), pp.26. ⟨10.1080/17513758.2015.1050465⟩ Article dans une revue hal-01123847v1
	Statistical estimation of a growth-fragmentation model observed on a genealogical tree Marie Doumic , Marc Hoffmann , Nathalie Krell , Lydia Robert Bernoulli, 2015, 21 (3), pp.1760-1799. ⟨10.3150/14-BEJ623⟩ Article dans une revue hal-01102799v1
	Microscopic approach of a time elapsed neural model Julien Chevallier , Maria J. Caceres , Marie Doumic , Patricia Reynaud-Bouret Mathematical Models and Methods in Applied Sciences, 2015, http://www.worldscientific.com/doi/10.1142/S021820251550058X. ⟨10.1142/S021820251550058X⟩ Article dans une revue hal-01159215v1
	The asymmetry of telomere replication contributes to replicative senescence heterogeneity Thibault Bourgeron , Zhou Xu , Marie Doumic , Maria Teresa Teixeira Scientific Reports, 2015, 5, pp.15326. ⟨10.1038/srep15326⟩ Article dans une revue hal-01272075v1
	Estimating the Division Rate of the Self-Similar Growth-Fragmentation Equation Thibault Bourgeron , Marie Doumic , Miguel Escobedo Inverse Problems, 2014, 30 (2), pp.025007, 28 Article dans une revue hal-00858488v1
	Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism Lydia Robert , Marc Hoffmann , Nathalie Krell , Stéphane Aymerich , Jérôme Robert BMC Biology, 2014, 12 (1), pp.17. ⟨10.1186/1741-7007-12-17⟩ Article dans une revue hal-00981312v1
	Size distribution of amyloid brils. Mathematical models and experimental data. Stephanie Prigent , Hadjer Wafaa Haffaf , H. T. Banks , M. Hoffmann , Human Rezaei International Journal of Pure and Applied Mathematics, 2014, 93 (6), pp.845-878. ⟨10.12732/ijpam.v93i6.10⟩ Article dans une revue hal-00958785v2
	Estimating the Division Rate for the Growth-Fragmentation Equation Marie Doumic-Jauffret , Leon M. Tine Journal of Mathematical Biology, 2013, 67 (1), pp.69-103. ⟨10.1007/s00285-012-0553-6⟩ Article dans une revue hal-00634539v1
	Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization. Annabelle Ballesta , Jonathan Lopez , Nikolay Popgeorgiev , Philippe Gonzalo , Marie Doumic PLoS Computational Biology, 2013, 9 (4), pp.e1003011. ⟨10.1371/journal.pcbi.1003011⟩ Article dans une revue hal-00849021v1
	Self-similarity in a General Aggregation-Fragmentation Problem ; Application to Fitness Analysis Vincent Calvez , Marie Doumic-Jauffret , Pierre Gabriel Journal de Mathématiques Pures et Appliquées, 2012, 98 (1), pp.1-27. ⟨10.1016/j.matpur.2012.01.004⟩ Article dans une revue hal-00539279v2
	An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation. Stephanie Prigent , Annabelle Ballesta , Frédérique Charles , Natacha Lenuzza , Pierre Gabriel PLoS ONE, 2012, 7 (11), pp.e43273. ⟨10.1371/journal.pone.0043273⟩ Article dans une revue hal-00778052v1
	Nonparametric estimation of the division rate of a size-structured population Marie Doumic-Jauffret , Marc Hoffmann , Patricia Reynaud-Bouret , Vincent Rivoirard SIAM Journal on Numerical Analysis, 2012, 50 (2), pp.925--950. ⟨10.1137/110828344⟩ Article dans une revue hal-00578694v1
	A Structured Population Model of Cell Differentiation Marie Doumic , Anna Marciniak-Czochra , Benoît Perthame , Jorge Zubelli SIAM Journal on Applied Mathematics, 2011, 71 (6), pp.1918-1940. ⟨10.1137/100816584⟩ Article dans une revue inria-00541860v1
	A new model for the estimation of cell proliferation dynamics using CFSE data. H. T. Banks , Karyn L Sutton , W Clayton Thompson , Gennady Bocharov , Marie Doumic Journal of Immunological Methods, 2011, 373 (1-2), pp.143-60. ⟨10.1016/j.jim.2011.08.014⟩ Article dans une revue hal-00778058v1
	Label Structured Cell Proliferation Models. H. T. Banks , Frédérique Charles , Marie Doumic-Jauffret , Karyn L Sutton , W Clayton Thompson Applied Mathematics Letters, 2010, 23 (12), pp.1412-1415. ⟨10.1016/j.aml.2010.07.009⟩ Article dans une revue hal-00778074v1
	Eigenelements of a General Aggregation-Fragmentation Model Marie Doumic-Jauffret , Pierre Gabriel Mathematical Models and Methods in Applied Sciences, 2010, 20 (5), pp.757-783. ⟨10.1142/S021820251000443X⟩ Article dans une revue hal-00408088v3
	Stability Analysis of a Simpliﬁed Yet Complete Model for Chronic Myelegenous Leukemia Marie Doumic-Jauffret , Peter S. Kim , Benoît Perthame Bulletin of Mathematical Biology, 2010, 72 (7), pp.1732-1759. ⟨10.1007/s11538-009-9500-0⟩ Article dans une revue hal-00413152v1
	On the Calibration of a Size-Structured Population Model from Experimental Data Marie Doumic-Jauffret , Pedro Maia , Jorge Zubelli Acta Biotheoretica, 2010, 58 (4), pp.405-413. ⟨10.1007/s10441-010-9114-9⟩ Article dans une revue hal-00412637v1
	Prion dynamics with size dependency-strain phenomena Vincent Calvez , Natacha Lenuzza , Marie Doumic , Jean-Philippe Deslys , Franck Mouthon Journal of Biological Dynamics, 2010, 4 (1), pp.28-42. ⟨10.1080/17513750902935208⟩ Article dans une revue hal-00788492v1
	Numerical Solution of an Inverse Problem in Size-Structured Population Dynamics Marie Doumic-Jauffret , Benoît Perthame , Jorge Zubelli Inverse Problems, 2009, 25 (4), pp.045008. ⟨10.1088/0266-5611/25/4/045008⟩ Article dans une revue hal-00327151v1
	Boundary Value Problem for an Oblique Paraxial Model of Light Propagation Marie Doumic-Jauffret Methods and Applications of Analysis, 2009, 16 (1), pp.119-138 Article dans une revue hal-00337162v1
	Simulation of Laser Beam Propagation With a Paraxial Model in a Tilted Frame Marie Doumic , Frédéric Duboc , François Golse , Rémi Sentis Journal of Computational Physics, 2009, 228 (3), pp.861--880. ⟨10.1016/j.jcp.2008.10.009⟩ Article dans une revue hal-00327179v1
	Scaling limit of a discrete prion dynamics model Marie Doumic , Thierry Goudon , Thomas Lepoutre Communications in Mathematical Sciences, 2009, 7 (4), ⟨10.4310/CMS.2009.v7.n4.a3⟩ Article dans une revue inria-00403914v1
	Analysis of a Population Model Structured by the Cells Molecular Content Marie Doumic-Jauffret Mathematical Modelling of Natural Phenomena, 2007, 2 (3), pp.121-152. ⟨10.1051/mmnp:2007006⟩ Article dans une revue hal-00327131v1

	How the shortest telomere in the cell signals senescence Prisca Berardi , Stefano Mattarocci , Rachel Langston , Pascale Jolivet , Gilles Charvin EMBO Workshop on Telomere function and evolution in health and disease, EMBO, Sep 2022, Troia, Portugal Communication dans un congrès hal-03960641v1
	The effect of the shortest telomere on cell proliferation Stefano Mattarocci , Prisca Berardi , Rachel Langston , Stéphane Marcand , Marie Doumic Telomeres & Telomerase, Cold Spring Habor Laboratory, Dec 2021, Cold Spring Harbor, United States Communication dans un congrès hal-03960655v1
	Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques Yi Yin , Stephanie Prigent , Joan Torrent , Human Rezaei , Dirk Drasdo 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.534-537, ⟨10.1109/ISBI.2019.8759597⟩ Communication dans un congrès hal-02973437v1
	Dynamics of prion replication and structural diversification Vincent Béringue , Angélique Igel-Egalon , Florent Laferrière , Mathieu Merzach , Tina Knäpple Prion 2018, May 2018, Santiago de Compostela,, Spain Communication dans un congrès hal-04502148v1

	How the shortest telomere in the cell signals senescence Stefano Mattarocci , Prisca Berardi , Rachel Langston , Stéphane Marcand , Marie Doumic Telomeres & Telomerase, Dec 2021, Cold Spring Harbor (New York), United States Poster de conférence hal-03960682v1

	Individual and population approaches for calibrating division rates in population dynamics: Application to the bacterial cell cycle Marie Doumic , Marc Hoffmann Modeling and Simulation for Collective Dynamics, 40, WORLD SCIENTIFIC, pp.1-81, 2023, Lecture Notes Series, Institute for Mathematical Sciences, National University of Singapore, ⟨10.1142/9789811266140_0001⟩ Chapitre d'ouvrage hal-03328781v2

	An inverse problem: recovering the fragmentation kernel from the short-time behaviour of the fragmentation equation Marie Doumic , Miguel Escobedo , Magali Tournus 2023 Pré-publication, Document de travail hal-03494439v2
	Individual cell fate and population dynamics revealed by a mathematical model linking telomere length and replicative senescence Anaïs Rat , Marie Doumic , Maria Teresa Teixeira , Zhou Xu 2023 Pré-publication, Document de travail hal-04305005v1
	Testing for high frequency features in a noisy signal Mathieu Mezache , Marc Hoffmann , Human Rezaei , Marie Doumic 2019 Pré-publication, Document de travail hal-02263522v2
	Strategic Workforce Planning and sales force : a demographic approach to productivity Marie Doumic , Mathieu Mezache , Benoît Perthame , Edouard Ribes , Delphine Salort 2017 Pré-publication, Document de travail hal-01449812v1

	Etude asymptotique et simulation numérique de la propagation Laser en milieu inhomogène Marie Doumic Mathématiques [math]. Université Paris-Diderot - Paris VII, 2005. Français. ⟨NNT : ⟩ Thèse tel-00142670v1

	Growth-fragmentation equations in biology Marie Doumic Analysis of PDEs [math.AP]. Université Pierre et Marie Curie - Paris VI, 2013 HDR tel-00844123v1

	Simulation of the critical fragmentation equation with binary fission Marie Doumic 2017 Vidéo medihal-01510970v1
	Simulation of the growth-fragmentation equation in a periodic case - Non-dissipative numerical scheme Marie Doumic 2016 Vidéo medihal-01407826v1

Marie Doumic

Publications

Multispecies cross-diffusions: from a nonlocal mean-field to a porous medium system without self-diffusion

A mathematical model of p62-ubiquitin aggregates in autophagy

Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation

Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae

Estimating the division rate from indirect measurements of single cells

The Division of Amyloid Fibrils: Systematic Comparison of Fibril Fragmentation Stability by Linking Theory with Experiments

A purely mechanical model with asymmetric features for early morphogenesis of rod-shaped bacteria micro-colony

Pressure Reveals Unique Conformational Features in Prion Protein Fibril Diversity

Early stage prion assembly involves two subpopulations with different quaternary structures and a secondary templating pathway

A bi-monomeric, nonlinear Becker-Döring-type system to capture oscillatory aggregation kinetics in prion dynamics

Bidirectional sliding of two parallel microtubules generated by multiple identical motors

Cyclic asymptotic behaviour of a population reproducing by fission into two equal parts

Long-time asymptotics for polymerization models

Estimating the division rate and kernel in the fragmentation equation

Relative Entropy Method for Measure Solutions of the Growth-Fragmentation Equation

Toward an integrated workforce planning framework using structured equations

The mechanism of monomer transfer between two structurally distinct PrP oligomers

A numerical scheme for the early steps of nucleation-aggregation Models

Insights into the variability of nucleated amyloid polymerization by a minimalistic model of stochastic protein assembly

Asymptotics of Stochastic Protein Assembly Models

Estimation from Moments Measurements for Amyloid Depolymerisation

Time Asymptotics for a Critical Case in Fragmentation and Growth-Fragmentation Equations

Information Content in Data Sets for a Nucleated-Polymerization Model

Statistical estimation of a growth-fragmentation model observed on a genealogical tree

Microscopic approach of a time elapsed neural model

The asymmetry of telomere replication contributes to replicative senescence heterogeneity

Estimating the Division Rate of the Self-Similar Growth-Fragmentation Equation

Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism

Size distribution of amyloid brils. Mathematical models and experimental data.

Estimating the Division Rate for the Growth-Fragmentation Equation

Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization.

Self-similarity in a General Aggregation-Fragmentation Problem ; Application to Fitness Analysis

An efficient kinetic model for assemblies of amyloid fibrils and its application to polyglutamine aggregation.

Nonparametric estimation of the division rate of a size-structured population

A Structured Population Model of Cell Differentiation

A new model for the estimation of cell proliferation dynamics using CFSE data.

Label Structured Cell Proliferation Models.

Eigenelements of a General Aggregation-Fragmentation Model

Stability Analysis of a Simpliﬁed Yet Complete Model for Chronic Myelegenous Leukemia

On the Calibration of a Size-Structured Population Model from Experimental Data

Prion dynamics with size dependency-strain phenomena

Numerical Solution of an Inverse Problem in Size-Structured Population Dynamics

Boundary Value Problem for an Oblique Paraxial Model of Light Propagation

Simulation of Laser Beam Propagation With a Paraxial Model in a Tilted Frame

Scaling limit of a discrete prion dynamics model

Analysis of a Population Model Structured by the Cells Molecular Content

How the shortest telomere in the cell signals senescence

The effect of the shortest telomere on cell proliferation

Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques

Dynamics of prion replication and structural diversification

How the shortest telomere in the cell signals senescence

Individual and population approaches for calibrating division rates in population dynamics: Application to the bacterial cell cycle

An inverse problem: recovering the fragmentation kernel from the short-time behaviour of the fragmentation equation

Individual cell fate and population dynamics revealed by a mathematical model linking telomere length and replicative senescence

Testing for high frequency features in a noisy signal

Strategic Workforce Planning and sales force : a demographic approach to productivity

Etude asymptotique et simulation numérique de la propagation Laser en milieu inhomogène

Growth-fragmentation equations in biology

Simulation of the critical fragmentation equation with binary fission

Simulation of the growth-fragmentation equation in a periodic case - Non-dissipative numerical scheme