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Marie Doumic Jauffret - Curriculum Vitae

Journal articles44 documents

  • Julia Delacour, Marie Doumic, Sascha Martens, Christian Schmeiser, Gabriele Zaffagnini. A mathematical model of p62-ubiquitin aggregates in autophagy. Journal of Mathematical Biology, Springer Verlag (Germany), 2022, 84 (3), ⟨10.1007/s00285-021-01659-2⟩. ⟨hal-02548223⟩
  • Hugo Martin, Marie Doumic, Maria Teresa Teixeira, Zhou Xu. Telomere shortening causes distinct cell division regimes during replicative senescence in Saccharomyces cerevisiae. Cell & Bioscience, BioMed Central, 2021, 11 (1), ⟨10.1186/s13578-021-00693-3⟩. ⟨hal-03374435⟩
  • Magali Tournus, Miguel Escobedo, Wei-Feng Xue, Marie Doumic. Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation. PLoS Computational Biology, Public Library of Science, 2021, 17 (9), pp.e1008964. ⟨10.1371/journal.pcbi.1008964⟩. ⟨hal-03131754⟩
  • Marie Doumic, Adélaïde Olivier, Lydia Robert. Estimating the division rate from indirect measurements of single cells. Discrete and Continuous Dynamical Systems - Series B, American Institute of Mathematical Sciences, 2020, 25 (10), pp.3931--3961. ⟨10.3934/dcdsb.2020078⟩. ⟨hal-02175633⟩
  • David Béal, Magali Tournus, Ricardo Marchante, Tracey Purton, David Smith, et al.. The Division of Amyloid Fibrils: Systematic Comparison of Fibril Fragmentation Stability by Linking Theory with Experiments. iScience, Elsevier, 2020, 23 (9), ⟨10.1016/j.isci.2020.101512⟩. ⟨hal-01966243⟩
  • Marie Doumic, Sophie Hecht, Diane Peurichard. A purely mechanical model with asymmetric features for early morphogenesis of rod-shaped bacteria micro-colony. Mathematical Biosciences and Engineering, AIMS Press, 2020, 17 (6), ⟨10.3934/mbe.2020356⟩. ⟨hal-02865566⟩
  • Joan Torrent, Davy Martin, Sylvie Noinville, Yi Yin, Marie Doumic, et al.. Pressure Reveals Unique Conformational Features in Prion Protein Fibril Diversity. Scientific Reports, Nature Publishing Group, 2019, 9, pp.2802. ⟨10.1038/s41598-019-39261-8⟩. ⟨hal-02057700⟩
  • Marie Doumic, Klemens Fellner, Mathieu Mezache, Human Rezaei. A bi-monomeric, nonlinear Becker-Döring-type system to capture oscillatory aggregation kinetics in prion dynamics. Journal of Theoretical Biology, Elsevier, 2019, 480, pp.241--261. ⟨10.1016/j.jtbi.2019.08.007⟩. ⟨hal-01863748⟩
  • Angélique Igel-Egalon, Florent Laferrière, Mohammed Moudjou, Jan Bohl, Mathieu Mezache, et al.. Early stage prion assembly involves two subpopulations with different quaternary structures and a secondary templating pathway. Communications Biology, Nature Publishing Group, 2019, 2 (1), pp.1-13. ⟨10.1038/s42003-019-0608-y⟩. ⟨hal-02317910⟩
  • Etienne Bernard, Marie Doumic, Pierre Gabriel. Cyclic asymptotic behaviour of a population reproducing by fission into two equal parts. Kinetic and Related Models , AIMS, 2019, 12 (3), pp.551-571. ⟨10.3934/krm.2019022⟩. ⟨hal-01363549v5⟩
  • Jun Allard, Marie Doumic, Alex Mogilner, Dietmar Oelz. Bidirectional sliding of two parallel microtubules generated by multiple identical motors. Journal of Mathematical Biology, Springer Verlag (Germany), 2019, ⟨10.1007/s00285-019-01369-w⟩. ⟨hal-02181135⟩
  • Juan Calvo, Marie Doumic, Benoît Perthame. Long-time asymptotics for polymerization models. Communications in Mathematical Physics, Springer Verlag, 2018, 363 (1), pp.111-137. ⟨10.1007/s00220-018-3218-5⟩. ⟨hal-01570292v2⟩
  • Marie Doumic, Miguel Escobedo, Magali Tournus. Estimating the division rate and kernel in the fragmentation equation. Annales de l'Institut Henri Poincaré (C) Non Linear Analysis, Elsevier, 2018, 35 (7), pp.1847-1884. ⟨10.1016/j.anihpc.2018.03.004⟩. ⟨hal-01501811v2⟩
  • Tomasz Dębiec, Marie Doumic, Piotr Gwiazda, Emil Wiedemann. Relative Entropy Method for Measure Solutions of the Growth-Fragmentation Equation. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2018, 50 (6), pp.5811-5824. ⟨hal-01762974⟩
  • Marie Doumic, Benoît Perthame, Edouard Ribes, Delphine Salort, Nathan Toubiana. Toward an integrated workforce planning framework using structured equations. European Journal of Operational Research, Elsevier, 2017, 262, ⟨10.1016/j.ejor.2017.03.076⟩. ⟨hal-01343368v2⟩
  • Aurora Armiento, Philippe Moireau, Davy Martin, Nad’a Lepejova, Marie Doumic, et al.. The mechanism of monomer transfer between two structurally distinct PrP oligomers. PLoS ONE, Public Library of Science, 2017, 12 (7), ⟨10.1371/journal.pone.0180538⟩. ⟨hal-01574346⟩
  • Harvey Thomas Banks, Marie Doumic, Carola Kruse. A numerical scheme for the early steps of nucleation-aggregation Models. Journal of Mathematical Biology, Springer Verlag (Germany), 2017, 74 (1-2), pp.259-287. ⟨10.1007/s00285-016-1026-0⟩. ⟨hal-00954437⟩
  • Marie Doumic, Sarah Eugene, Philippe Robert. Asymptotics of Stochastic Protein Assembly Models. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2016, 76 (6), pp.20. ⟨10.1137/16M1066920⟩. ⟨hal-01301266⟩
  • Sarah Eugene, Wei-Feng Xue, Philippe Robert, Marie Doumic. Insights into the variability of nucleated amyloid polymerization by a minimalistic model of stochastic protein assembly. Journal of Chemical Physics, American Institute of Physics, 2016, 144 (17), pp.12. ⟨10.1063/1.4947472⟩. ⟨hal-01205549v3⟩
  • Marie Doumic, Miguel Escobedo. Time Asymptotics for a Critical Case in Fragmentation and Growth-Fragmentation Equations. Kinetic and Related Models , AIMS, 2016, 9 (2), pp.47. ⟨10.3934/krm.2016.9.251⟩. ⟨hal-01080361v3⟩
  • Aurora Armiento, Marie Doumic, Philippe Moireau, Human Rezaei. Estimation from Moments Measurements for Amyloid Depolymerisation. Journal of Theoretical Biology, Elsevier, 2016, 397, pp.68 - 88. ⟨10.1016/j.jtbi.2016.02.037⟩. ⟨hal-01248255⟩
  • H. T. Banks, Marie Doumic, Carola Kruse, Stephanie Prigent, H Rezaei. Information Content in Data Sets for a Nucleated-Polymerization Model. Journal of Biological Dynamics, Taylor & Francis Open, 2015, 9 (1), pp.26. ⟨10.1080/17513758.2015.1050465⟩. ⟨hal-01123847⟩
  • Thibault Bourgeron, Zhou Xu, Marie Doumic, Maria Teresa Teixeira. The asymmetry of telomere replication contributes to replicative senescence heterogeneity. Scientific Reports, Nature Publishing Group, 2015, 5, pp.15326. ⟨10.1038/srep15326⟩. ⟨hal-01272075⟩
  • Julien Chevallier, Maria J. Caceres, Marie Doumic, Patricia Reynaud-Bouret. Microscopic approach of a time elapsed neural model. Mathematical Models and Methods in Applied Sciences, World Scientific Publishing, 2015, ⟨10.1142/S021820251550058X⟩. ⟨hal-01159215⟩
  • Marie Doumic, Marc Hoffmann, Nathalie Krell, Lydia Robert. Statistical estimation of a growth-fragmentation model observed on a genealogical tree. Bernoulli, Bernoulli Society for Mathematical Statistics and Probability, 2015, 21 (3), pp.1760-1799. ⟨10.3150/14-BEJ623⟩. ⟨hal-01102799⟩
  • Thibault Bourgeron, Marie Doumic, Miguel Escobedo. Estimating the Division Rate of the Self-Similar Growth-Fragmentation Equation. Inverse Problems, IOP Publishing, 2014, 30 (2), pp.025007, 28. ⟨hal-00858488⟩
  • Lydia Robert, Marc Hoffmann, Nathalie Krell, Stéphane Aymerich, Jérôme Robert, et al.. Division in Escherichia coli is triggered by a size-sensing rather than a timing mechanism. BMC Biology, BioMed Central, 2014, 12 (1), pp.17. ⟨10.1186/1741-7007-12-17⟩. ⟨hal-00981312⟩
  • Stephanie Prigent, Hadjer Wafaa Haffaf, H. T. Banks, M. Hoffmann, Human Rezaei, et al.. Size distribution of amyloid brils. Mathematical models and experimental data.. International Journal of Pure and Applied Mathematics, Academic Publishing Ltd, 2014, 93 (6), pp.845-878. ⟨10.12732/ijpam.v93i6.10⟩. ⟨hal-00958785v2⟩
  • Marie Doumic-Jauffret, Leon M. Tine. Estimating the Division Rate for the Growth-Fragmentation Equation. Journal of Mathematical Biology, Springer Verlag (Germany), 2013, 67 (1), pp.69-103. ⟨10.1007/s00285-012-0553-6⟩. ⟨hal-00634539⟩
  • Annabelle Ballesta, Jonathan Lopez, Nikolay Popgeorgiev, Philippe Gonzalo, Marie Doumic, et al.. Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization.. PLoS Computational Biology, Public Library of Science, 2013, 9 (4), pp.e1003011. ⟨10.1371/journal.pcbi.1003011⟩. ⟨hal-00849021⟩
  • Vincent Calvez, Marie Doumic-Jauffret, Pierre Gabriel. Self-similarity in a General Aggregation-Fragmentation Problem ; Application to Fitness Analysis. Journal de Mathématiques Pures et Appliquées, Elsevier, 2012, 98 (1), pp.1-27. ⟨10.1016/j.matpur.2012.01.004⟩. ⟨hal-00539279v2⟩
  • Marie Doumic-Jauffret, Marc Hoffmann, Patricia Reynaud-Bouret, Vincent Rivoirard. Nonparametric estimation of the division rate of a size-structured population. SIAM Journal on Numerical Analysis, Society for Industrial and Applied Mathematics, 2012, 50 (2), pp.925--950. ⟨10.1137/110828344⟩. ⟨hal-00578694⟩
  • H. T. Banks, Karyn L Sutton, W Clayton Thompson, Gennady Bocharov, Marie Doumic, et al.. A new model for the estimation of cell proliferation dynamics using CFSE data.. Journal of Immunological Methods, Elsevier, 2011, 373 (1-2), pp.143-60. ⟨10.1016/j.jim.2011.08.014⟩. ⟨hal-00778058⟩
  • Marie Doumic, Anna Marciniak-Czochra, Benoît Perthame, Jorge Zubelli. A Structured Population Model of Cell Differentiation. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2011, 71 (6), pp.1918-1940. ⟨10.1137/100816584⟩. ⟨inria-00541860⟩
  • H. T. Banks, Frédérique Charles, Marie Doumic-Jauffret, Karyn L Sutton, W Clayton Thompson. Label Structured Cell Proliferation Models.. Applied Mathematics Letters, Elsevier, 2010, 23 (12), pp.1412-1415. ⟨10.1016/j.aml.2010.07.009⟩. ⟨hal-00778074⟩
  • Marie Doumic-Jauffret, Pedro Maia, Jorge Zubelli. On the Calibration of a Size-Structured Population Model from Experimental Data. Acta Biotheoretica, Springer Verlag, 2010, 58 (4), pp.405-413. ⟨10.1007/s10441-010-9114-9⟩. ⟨hal-00412637⟩
  • Marie Doumic-Jauffret, Peter S. Kim, Benoît Perthame. Stability Analysis of a Simplified Yet Complete Model for Chronic Myelegenous Leukemia. Bulletin of Mathematical Biology, Springer Verlag, 2010, 72 (7), pp.1732-1759. ⟨10.1007/s11538-009-9500-0⟩. ⟨hal-00413152⟩
  • Marie Doumic-Jauffret, Pierre Gabriel. Eigenelements of a General Aggregation-Fragmentation Model. Mathematical Models and Methods in Applied Sciences, World Scientific Publishing, 2010, 20 (5), pp.757-783. ⟨10.1142/S021820251000443X⟩. ⟨hal-00408088v3⟩
  • Vincent Calvez, Natacha Lenuzza, Marie Doumic, Jean-Philippe Deslys, Franck Mouthon, et al.. Prion dynamics with size dependency-strain phenomena. Journal of Biological Dynamics, Taylor & Francis Open, 2010, 4 (1), pp.28-42. ⟨10.1080/17513750902935208⟩. ⟨hal-00788492⟩
  • Marie Doumic-Jauffret, Benoît Perthame, Jorge Zubelli. Numerical Solution of an Inverse Problem in Size-Structured Population Dynamics. Inverse Problems, IOP Publishing, 2009, 25 (4), pp.045008. ⟨10.1088/0266-5611/25/4/045008⟩. ⟨hal-00327151⟩
  • Marie Doumic, Frédéric Duboc, François Golse, Rémi Sentis. Simulation of Laser Beam Propagation With a Paraxial Model in a Tilted Frame. Journal of Computational Physics, Elsevier, 2009, 228 (3), pp.861--880. ⟨10.1016/⟩. ⟨hal-00327179⟩
  • Marie Doumic, Thierry Goudon, Thomas Lepoutre. Scaling limit of a discrete prion dynamics model. Communications in Mathematical Sciences, International Press, 2009, 7 (4), ⟨10.4310/CMS.2009.v7.n4.a3⟩. ⟨inria-00403914⟩
  • Marie Doumic-Jauffret. Boundary Value Problem for an Oblique Paraxial Model of Light Propagation. Methods and Applications of Analysis, 2009, 16 (1), pp.119-138. ⟨hal-00337162⟩
  • Marie Doumic-Jauffret. Analysis of a Population Model Structured by the Cells Molecular Content. Mathematical Modelling of Natural Phenomena, EDP Sciences, 2007, 2 (3), pp.121-152. ⟨10.1051/mmnp:2007006⟩. ⟨hal-00327131⟩

Conference papers1 document

  • Yi Yin, Stephanie Prigent, Joan Torrent, Human Rezaei, Dirk Drasdo, et al.. Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques. 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.534-537, ⟨10.1109/ISBI.2019.8759597⟩. ⟨hal-02973437⟩

Directions of work or proceedings1 document

Preprints, Working Papers, ...4 documents

  • Marie Doumic, Marc Hoffmann. Individual and population approaches for calibrating division rates in population dynamics: Application to the bacterial cell cycle. 2021. ⟨hal-03328781⟩
  • Marie Doumic, Miguel Escobedo, Magali Tournus. An inverse problem: recovering the fragmentation kernel from the short-time behaviour of the fragmentation equation. 2021. ⟨hal-03494439⟩
  • Mathieu Mezache, Marc Hoffmann, Human Rezaei, Marie Doumic. Testing for high frequency features in a noisy signal. 2019. ⟨hal-02263522v2⟩
  • Marie Doumic, Mathieu Mezache, Benoît Perthame, Edouard Ribes, Delphine Salort. Strategic Workforce Planning and sales force : a demographic approach to productivity. 2017. ⟨hal-01449812⟩

Theses1 document

  • Marie Doumic. Etude asymptotique et simulation numérique de la propagation Laser en milieu inhomogène. Mathématiques [math]. Université Paris-Diderot - Paris VII, 2005. Français. ⟨tel-00142670⟩

Habilitation à diriger des recherches1 document

  • Marie Doumic. Growth-fragmentation equations in biology. Analysis of PDEs [math.AP]. Université Pierre et Marie Curie - Paris VI, 2013. ⟨tel-00844123⟩

Videos2 documents

  • Marie Doumic. Simulation of the critical fragmentation equation with binary fission. 2017. ⟨medihal-01510970⟩
  • Marie Doumic. Simulation of the growth-fragmentation equation in a periodic case - Non-dissipative numerical scheme. 2016. ⟨medihal-01407826⟩