maria barbi

Documents

Publications

	Assessing the polymer coil-globule state from the very first spectral modes Timothy Foldes , Antony Lesage , Maria Barbi Physical Review Letters, 2021, ⟨10.1103/PhysRevLett.127.277801⟩ Article dans une revue hal-03466632v1
	Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains Antony Lesage , Vincent Dahirel , Jean-Marc Victor , Maria Barbi Epigenetics & Chromatin, 2019, 12 (1), ⟨10.1186/s13072-019-0269-6⟩ Article dans une revue hal-02147100v1
	Chromosomes : étonnants polymères ! Maria Barbi , Annick Lesne , Julien Mozziconacci , Jean Marc Victor Reflets de la Physique, 2018, 57, pp.10-15. ⟨10.1051/refdp/201857010⟩ Article dans une revue hal-03518411v1
	The physics of epigenetics Ruggero Cortini , Maria Barbi , Bertrand Caré , Christophe Lavelle , Annick Lesne Reviews of Modern Physics, 2016, 88 (2), ⟨10.1103/RevModPhys.88.025002⟩ Article dans une revue hal-03510200v1
	Enseigner la physique à l’université. Colloque régional, 6-7 juillet 2015 – Paris Maria Barbi , Guillaume Blanc , Florence Elias , Sylvain Fautrat , C. de Hosson Reflets de la Physique, 2015 Article dans une revue hal-01663268v1
	Theory and simulations of toroidal and rod-like structures in single-molecule DNA condensation Ruggero Cortini , Bertrand Caré , Jean-Marc Victor , Maria Barbi Journal of Chemical Physics, 2015, 142 (10), pp.105102. ⟨10.1063/1.4914513⟩ Article dans une revue hal-03510145v1
	In Silico Single-Molecule Manipulation of DNA with Rigid Body Dynamics Pascal Carrivain , Maria Barbi , Jean-Marc Victor PLoS Computational Biology, 2014, 10 (2), ⟨10.1371/journal.pcbi.1003456⟩ Article dans une revue hal-01342589v1
	DNA topology in chromosomes: a quantitative survey and its physiological implications Maria Barbi , Julien Mozziconacci , Hua Wong , Jean-Marc Victor Journal of Mathematical Biology, 2014, 68 (1-2), pp.145-179. ⟨10.1007/s00285-012-0621-y⟩ Article dans une revue hal-03510117v1
	Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective Pascal Carrivain , Axel Cournac , Christophe Lavelle , Annick Lesne , Julien Mozziconacci Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩ Article dans une revue hal-03510086v1
	On the topology of chromatin fibres Maria Barbi , Julien Mozziconacci , Jean-Marc Victor , Hua Wong , Christophe Lavelle Interface Focus, 2012, 2 (5), pp.546-554. ⟨10.1098/rsfs.2011.0101⟩ Article dans une revue hal-03510056v1
	Pulling chromatin apart: Unstacking or Unwrapping? Jean Marc Victor , Jordanka Zlatanova , Maria Barbi , Julien Mozziconacci BMC Biophysics, 2012, 5 (1), ⟨10.1186/2046-1682-5-21⟩ Article dans une revue hal-03510102v1
	Effective interaction between charged nanoparticles and DNA Fabien Paillusson , Vincent Dahirel , Marie Jardat , Jean-Marc Victor , Maria Barbi Physical Chemistry Chemical Physics, 2011, 13 (27), pp.12603. ⟨10.1039/c1cp20324j⟩ Article dans une revue hal-03510036v1
	Linker histones incorporation maintains chromatin fiber plasticity. Pierre Recouvreux , Christophe Lavelle , Maria Barbi , Natalia Conde E Silva , Eric Le Cam Biophysical Journal, 2011, 100 (11), pp.2726-35. ⟨10.1016/j.bpj.2011.03.064⟩ Article dans une revue hal-00625637v1
	Chromatin topological transitions Christophe Lavelle , Aurélien Bancaud , Pierre Recouvreux , Maria Barbi , Jean-Marc Victor Progress of Theoretical Physics Supplement, 2011, 191, pp.30-39 Article dans une revue hal-01053106v1
	Transcription within Condensed Chromatin: Steric Hindrance Facilitates Elongation Christophe Bécavin , Maria Barbi , Jean-Marc Victor , Annick Lesne Biophysical Journal, 2010, 98 (5), pp.824-833. ⟨10.1016/j.bpj.2009.10.054⟩ Article dans une revue hal-03510014v1
	Nonspecific DNA-Protein Interaction: Why Proteins Can Diffuse along DNA Vincent Dahirel , Fabien Paillusson , Marie Jardat , Maria Barbi , Jean-Marc Victor Physical Review Letters, 2009, 102 (22), ⟨10.1103/PhysRevLett.102.228101⟩ Article dans une revue hal-03509993v1
	Poisson-Boltzmann for oppositely charged bodies: an explicit derivation Jean-Marc Victor , Maria Barbi , Fabien Paillusson Molecular Physics, 2009, 107 (13), pp.1379-1391. ⟨10.1080/00268970902893156⟩ Article dans une revue hal-00513286v1
	Nucleosome chiral transition under positive torsional stress in single chromatin fibers. Aurélien Bancaud , Gaudeline Wagner , Natalia Conde E Silva , Christophe Lavelle , Hua Wong Molecular Cell, 2007, 27 (1), pp.135-47. ⟨10.1016/j.molcel.2007.05.037⟩ Article dans une revue hal-00181873v1
	A physical model for the condensation and decondensation of eukaryotic chromosomes Julien Mozziconacci , Christophe Lavelle , Maria Barbi , Annick Lesne , Jean-Marc Victor FEBS Letters, 2006, 580 (2), pp.368-372. ⟨10.1016/j.febslet.2005.12.053⟩ Article dans une revue hal-03509975v1
	Structural plasticity of single chromatin fibers revealed by torsional manipulation. Aurélien Bancaud , Natalia Conde E Silva , Maria Barbi , Gaudeline Wagner , Jean-François Allemand Nature Structural and Molecular Biology, 2006, 13, pp.444-450. ⟨10.1038/nsmb1087⟩ Article dans une revue hal-00090147v1
	How does the chromatin fiber deal with topological constraints? Maria Barbi , Julien Mozziconacci , Jean-Marc Victor Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2005, 71, pp.031910. ⟨10.1103/PhysRevE.71.031910⟩ Article dans une revue hal-00012986v1
	A Model of Sequence Dependent Protein Diffusion Along Dna Maria Barbi , Christophe Place , Vladislav Popkov , Mario Salerno Journal of Biological Physics, 2004, 30,no.3, pp.203-226. ⟨10.1023/B:JOBP.0000046728.51620.14⟩ Article dans une revue hal-00012987v1
	Base-sequence-dependent sliding of proteins on DNA Maria Barbi , Christophe Place , Vladislav Popkov , Mario Salerno Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2004, 70, pp.041901 Article dans une revue hal-00003424v1
	Thermal denaturation of a helicoidal DNA model Maria Barbi , Stefano Lepri , Michel Peyrard , Nikos Theodorakopoulos Physical Review E , 2003, 68 (6), ⟨10.1103/PhysRevE.68.061909⟩ Article dans une revue hal-03509963v1
	Stabilization of ratchet dynamics by weak periodic signals Maria Barbi , Mario Salerno Physical Review E , 2001, 63 (6), ⟨10.1103/PhysRevE.63.066212⟩ Article dans une revue hal-03509953v1
	Phase locking effect and current reversals in deterministic underdamped ratchets Maria Barbi , Mario Salerno Physical Review E , 2000, 62 (2), pp.1988-1994. ⟨10.1103/PhysRevE.62.1988⟩ Article dans une revue hal-03509593v1
	Vector nonlinear Klein-Gordon lattices: General derivation of small amplitude envelope soliton solutions Simona Cocco , Maria Barbi , Michel Peyrard Physics Letters A, 1999, 253 (3-4), pp.161-167. ⟨10.1016/S0375-9601(99)00058-4⟩ Article dans une revue hal-03509237v1
	A Twist Opening Model for DNA Maria Barbi , Simona Cocco , Michel Peyrard , Stefano Ruffo Journal of Biological Physics, 1999, 24 (2/4), pp.97-114. ⟨10.1023/A:1005139326775⟩ Article dans une revue hal-03509228v1
	Dynamical model for DNA sequences P. Allegrini , Maria Barbi , P. Grigolini , B. West Physical Review E , 1995, 52 (5), pp.5281-5296. ⟨10.1103/PhysRevE.52.5281⟩ Article dans une revue hal-03509184v1

	IN SILICO MANIPULATION OF SINGLE DNA MOLECULES Maria Barbi , R. Cortini , P. Carrivain International Symposium on Mathematical and Computational Biology, 2014, Poznan, France. pp.245-261, ⟨10.1142/9789814667944_0016⟩ Communication dans un congrès hal-03518414v1

	The Role of Supercoiling in the Motor Activity of RNA Polymerases Annick C Lesne , Jean-Marc Victor , Edouard Bertrand , Eugenia Basyuk , Maria Barbi Methods in Molecular Biology, pp.215-232, 2018, ⟨10.1007/978-1-4939-8556-2_11⟩ Chapitre d'ouvrage hal-02343520v1
	ON THE ION-MEDIATED INTERACTION BETWEEN PROTEIN AND DNA Maria Barbi , F. Paillusson Symmetries and Groups in Contemporary Physics, WORLD SCIENTIFIC, pp.231-236, 2013, ⟨10.1142/9789814518550_0028⟩ Chapitre d'ouvrage hal-03518420v1
	Protein–DNA Electrostatics Maria Barbi , Fabien Paillusson Dynamics of Proteins and Nucleic Acids, 92, Elsevier, pp.253-297, 2013, Advances in Protein Chemistry and Structural Biology, ⟨10.1016/B978-0-12-411636-8.00007-9⟩ Chapitre d'ouvrage hal-03518417v1

maria barbi

Publications

Assessing the polymer coil-globule state from the very first spectral modes

Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains

Chromosomes : étonnants polymères !

The physics of epigenetics

Enseigner la physique à l’université. Colloque régional, 6-7 juillet 2015 – Paris

Theory and simulations of toroidal and rod-like structures in single-molecule DNA condensation

In Silico Single-Molecule Manipulation of DNA with Rigid Body Dynamics

DNA topology in chromosomes: a quantitative survey and its physiological implications

Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective

On the topology of chromatin fibres

Pulling chromatin apart: Unstacking or Unwrapping?

Effective interaction between charged nanoparticles and DNA

Linker histones incorporation maintains chromatin fiber plasticity.

Chromatin topological transitions

Transcription within Condensed Chromatin: Steric Hindrance Facilitates Elongation

Nonspecific DNA-Protein Interaction: Why Proteins Can Diffuse along DNA

Poisson-Boltzmann for oppositely charged bodies: an explicit derivation

Nucleosome chiral transition under positive torsional stress in single chromatin fibers.

A physical model for the condensation and decondensation of eukaryotic chromosomes

Structural plasticity of single chromatin fibers revealed by torsional manipulation.

How does the chromatin fiber deal with topological constraints?

A Model of Sequence Dependent Protein Diffusion Along Dna

Base-sequence-dependent sliding of proteins on DNA

Thermal denaturation of a helicoidal DNA model

Stabilization of ratchet dynamics by weak periodic signals

Phase locking effect and current reversals in deterministic underdamped ratchets

Vector nonlinear Klein-Gordon lattices: General derivation of small amplitude envelope soliton solutions

A Twist Opening Model for DNA

Dynamical model for DNA sequences

IN SILICO MANIPULATION OF SINGLE DNA MOLECULES

The Role of Supercoiling in the Motor Activity of RNA Polymerases

ON THE ION-MEDIATED INTERACTION BETWEEN PROTEIN AND DNA

Protein–DNA Electrostatics