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TADs or no TADS: Lessons From Single-cell Imaging of Chromosome Architecture

Andrés M Cardozo Gizzi , Diego I Cattoni , Marcelo Nollmann
Journal of Molecular Biology, 2020, 432 (3), pp.682-693. ⟨10.1016/j.jmb.2019.12.034⟩
Article dans une revue hal-02955733v1
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In vivo phosphatidylserine variations steer Rho GTPase signaling in a cell-context dependent manner

Matthieu Platre , Vincent Bayle , Laia Armengot , Joseph Bareille , Maria Mar Marques-Bueno , et al.
2018
Pré-publication, Document de travail hal-02263107v1
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The LifeTime initiative: Towards cell-based medicine in Europe

Hans Clevers , Bart de Strooper , Angelika Eggert , Jan Ellenberg , Xosé Fernández , et al.
Nature, 2020, 587 (7834), pp.377-386. ⟨10.1038/s41586-020-2715-9⟩
Article dans une revue hal-03027059v1
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A plasma membrane nanoplatform ensures signal specificity during osmotic signaling in plants

M. Smokvarska , C. Francis , M.P. Platre , J.B. Fiche , C. Alcon , et al.
2020
Pré-publication, Document de travail hal-02873744v1
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Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions

Diego Cattoni , Andrés M Cardozo Gizzi , Mariya Georgieva , Marco Di Stefano , Alessandro Valeri , et al.
Nature Communications, 2017, 8 (1), pp.1753. ⟨10.1038/s41467-017-01962-x⟩
Article dans une revue hal-01652403v1
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LifeTime and improving European healthcare through cell-based interceptive medicine

Nikolaus Rajewsky , Geneviève Almouzni , Stanislaw A Gorski , Stein Aerts , Ido Amit , et al.
Nature, 2020, 587, pp.377 - 386. ⟨10.1038/s41586-020-2715-9⟩
Article dans une revue hal-04023884v2

Keeping up to speed with the transcription termination factor Rho motor.

Marc Boudvillain , Marcelo Nollmann , Emmanuel Margeat
Transcription, 2010, 1 (2), pp.70-75. ⟨10.4161/trns.1.2.12232⟩
Article dans une revue hal-00591655v1

Microscopy-based chromosome conformation capture enables simultaneous visualization of genome organization and transcription in intact organisms

Andres Cardozo Gizzi , Diego Cattoni , Jean-Bernard Fiche , Sergio Espinola , Julian Gurgo , et al.
2020
Pré-publication, Document de travail hal-03015157v1
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Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues

Vincent Bayle , Jean-Bernard Fiche , Claire Burny , Matthieu Pierre Platre , Marcelo Nollmann , et al.
Nature Protocols, 2021, 16 (3), pp.1600-1628. ⟨10.1038/s41596-020-00471-4⟩
Article dans une revue hal-03153046v1
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Hi-M: a Multiplex oligopaint FISH method to capture chromatin conformations in situ and accompanying open-source acquisition software

Jean-Bernard Fiche , Marie Schaeffer , Christophe Houbron , Christel Youhanna Elkhoury , Olivier Messina , et al.
2023
Pré-publication, Document de travail hal-04216501v1
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ATP-Driven Separation of Liquid Phase Condensates in Bacteria

Baptiste Guilhas , Jean-Charles Walter , Jerome Rech , Gabriel David , Nils-Ole Walliser , et al.
Molecular Cell, 2020, 79 (2), pp.293-303. ⟨10.1016/j.molcel.2020.06.034⟩
Article dans une revue hal-02391672v1

Dynamic and nanoscale organization of Rho of Plant/NADPH oxidase complexes during cell osmotic signaling

Alexandre Martiniere , Marija Smokvarska , Charbel Francis , Matthieu Pierre Platre , Jean-Bernard Fiche , et al.
Royal Microscopical Society, 2019, Oxford, United Kingdom
Communication dans un congrès hal-02953959v1
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Multiplexed chromatin imaging reveals predominantly pairwise long-range coordination between Drosophila Polycomb genes

Julian Gurgo , Jean-Charles Walter , Jean-Bernard Fiche , Christophe Houbron , Marie Schaeffer , et al.
2022
Pré-publication, Document de travail hal-03707233v1

MiSiC, a general deep learning-based method for the high-throughput cell segmentation of complex bacterial communities

Swapnesh Panigrahi , Dorothée Murat , Antoine Le Gall , Eugénie Martineau , Kelly Goldlust , et al.
Article dans une revue hal-03097113v1
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The impact of space and time on the functional output of the nucleus

Marcelo Nollmann , Isma Bennabi , Markus Götz , Thomas Gregor
Ana Pombo; Martin Hetzer; Tom Misteli. Nucleus, 2nd ed., Cold Spring Harbor laboratory press, 2021, 978-1-621823-89-6
Chapitre d'ouvrage pasteur-03216312v1
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A Plasma Membrane Nanodomain Ensures Signal Specificity during Osmotic Signaling in Plants

Marija Smokvarska , Charbel Francis , Matthieu Pierre Platre , Jean-Bernard Fiche , Carine Alcon , et al.
Current Biology - CB, 2020, 30 (23), pp.4654-4664. ⟨10.1016/j.cub.2020.09.013⟩
Article dans une revue hal-02967654v1

Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and pol II pausing

Jun Liang , Laurent Lacroix , Adrien Gamot , Suresh Cuddapah , Sophie Queille , et al.
Molecular Cell, 2014, 53 (4), pp.672-681. ⟨10.1016/j.molcel.2013.12.029⟩
Article dans une revue hal-02640063v1
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Osmotic Stress Activates Two Reactive Oxygen Species Pathways with Distinct Effects on Protein Nanodomains and Diffusion

Alexandre Martiniere , Jean Bernard Fiche , Marija Smokvarska , Stephane Mari , Carine Alcon , et al.
Plant Physiology, 2019, 179 (4), pp.1581-1593. ⟨10.1104/pp.18.01065⟩
Article dans une revue hal-02107546v1

Stochastic Self-Assembly of ParB Proteins Builds the Bacterial DNA Segregation Apparatus

Aurore Sanchez , Diego Cattoni , Jean-Charles Walter , Jérôme Rech , Andrea Parmeggiani , et al.
Cell Systems, 2015, 1, pp.163-173. ⟨10.1016/j.cels.2015.07.013⟩
Article dans une revue hal-01191677v1
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bacto_tracker: a method for single-cell tracking of M. xanthus in dense and multispecies colonies

Sara Rombouts , Jean-Bernard Fiche , Tam Mignot , Marcelo Nollmann
Open Research Europe, 2022, 2, pp.136. ⟨10.12688/openreseurope.15255.1⟩
Article dans une revue hal-04216509v1

Physical modeling of active bacterial DNA segregation

Jean-Charles Walter , Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , V. Lorman , et al.
6ème Journées Scientifiques du LabEx NUMEV, Nov 2017, Montpellier, France
Poster de conférence hal-01950263v1

CglB adhesins secreted at bacterial focal adhesions mediate gliding motility

Salim Islam , Laetitia My , Nicolas Jolivet , Akeisha Belgrave , Betty Fleuchot , et al.
2021
Pré-publication, Document de travail hal-03097119v1
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Biology across scales: from atomic processes to bacterial communities through the lens of the microscope

Tâm Mignot , Marcelo Nollmann
FEMS Microbiology Reviews, 2021, FEMS Microbiol Rev., 45 (5), pp.fuab009. ⟨10.1093/femsre/fuab009⟩
Article dans une revue hal-03216687v1
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RNA imaging in bacteria

Sara Rombouts , Marcelo Nollmann
FEMS Microbiology Reviews, 2020, 45 (2), ⟨10.1093/femsre/fuaa051⟩
Article dans une revue hal-02991916v1
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Contributions of 3D chromatin structure to cell-type specific gene regulation

Marie Schaeffer , Marcelo Nollmann
Current Opinion in Genetics and Development, In press, 79, pp.102032. ⟨10.1016/j.gde.2023.102032⟩
Article dans une revue hal-03974114v1
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Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

Martial Marbouty , Antoine Le gall , Diego I Cattoni , Axel Cournac , Alan Koh , et al.
Molecular Cell, 2015, 59 (4), pp.588-602. ⟨10.1016/j.molcel.2015.07.020⟩
Article dans une revue pasteur-01419993v1
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Developmental control of plant Rho GTPase nano-organization by the lipid phosphatidylserine

Matthieu Pierre Platre , Vincent Bayle , Laia Armengot , Joseph Bareille , Maria del Mar Marquès-Bueno , et al.
Science, 2019, 364 (6435), pp.57-62. ⟨10.1126/science.aav9959⟩
Article dans une revue hal-02122740v1
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The impact of space and time on the functional output of the nucleus

Marcelo Nollmann , Isma Bennabi , Markus Götz , Thomas Gregor
Cold Spring Harbor Perspectives in Biology, 2021, pp.a040378. ⟨10.1101/cshperspect.a040378⟩
Article dans une revue hal-03432715v1
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Perspectives on Chromosome Organization

Marcelo Nollmann , Romain Koszul
Journal of Molecular Biology, 2020, 432 (3), pp.635-637. ⟨10.1016/j.jmb.2019.12.021⟩
Article dans une revue pasteur-02868093v1

Physical modeling of active bacterial DNA segregation

Jean-Charles Walter , Jean-Yves Bouet , Jerome Dorignac , Frederic Geniet , Vladimir Lorman , et al.
Défi Inphyniti Workshop (CNRS, MI), Nov 2016, Paris, France
Poster de conférence hal-01950249v1