Simultaneous System Design and Path Planning: A Sampling-based Algorithm.
Kevin Molloy
,
Laurent Denarie
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Article dans une revue
hal-01834414v1
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A multi-tree approach to compute transition paths on energy landscapes
Didier Devaurs
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Workshop on Artificial Intelligence and Robotics Methods in Computational Biology, AAAI '13 , Jul 2013, Bellevue, United States. pp. 8-13
Communication dans un congrès
hal-00872247v1
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Atomic Scale Determination of Enzyme Flexibility and Active Site Stability through Static Modes: Case of Dihydrofolate Reductase
Marie Brut
,
Alain Estève
,
Georges Landa
,
Guillaume Renvez
,
Mehdi Djafari-Rouhani
,
et al.
Article dans une revue
hal-01481808v1
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MoMA-LigPath: A web server to simulate protein-ligand unbinding
Didier Devaurs
,
Léa Bouard
,
Marc Vaisset
,
Christophe Zanon
,
Ibrahim Al Bluwi
,
et al.
Article dans une revue
hal-00843321v1
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Combining System Design and Path Planning
Laurent Denarie
,
Kevin Molloy
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Goldberg K., Abbeel P., Bekris K., Miller L.
Algorithmic Foundations of Robotics XII , 13,
, pp.112-127, 2020, Springer Proceedings in Advanced Robotics,
⟨10.1007/978-3-030-43089-4_8⟩
Chapitre d'ouvrage
hal-02571707v1
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Segmenting Proteins into Tripeptides to Enhance Conformational Sampling with Monte Carlo Methods
Laurent Denarie
,
Ibrahim Al Bluwi
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Article dans une revue
hal-01708710v1
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Predicting secondary structure propensities in IDPs using simple statistics from three-residue fragments
Alejandro N Estaña
,
Amélie Barozet
,
Assia Mouhand
,
Marc Vaisset
,
Christophe Zanon
,
et al.
Article dans une revue
hal-02920302v1
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MoMA-LoopSampler: A web server to exhaustively sample protein loop conformations
Amélie Barozet
,
Kevin Molloy
,
Marc Vaisset
,
Christophe Zanon
,
Pierre Fauret
,
et al.
Article dans une revue
hal-03326493v1
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Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database
Alejandro N Estaña
,
Nathalie Sibille
,
Elise Delaforge
,
Marc Vaisset
,
Juan Cortés
,
et al.
Article dans une revue
hal-01954977v1
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Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules
Alejandro N Estaña
,
Kevin Molloy
,
Marc Vaisset
,
Nathalie Sibille
,
Thierry Simeon
,
et al.
Article dans une revue
hal-01823694v2
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A Reinforcement-Learning-Based Approach to Enhance Exhaustive Protein Loop Sampling
Amélie Barozet
,
Kevin Molloy
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Article dans une revue
hal-02289207v1
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Deformation of thiolated nucleic acid deposited on a silicon surface: A Static Mode approach
Marie Brut
,
Alain Estève
,
Georges Landa
,
Guillaume Renvez
,
Mehdi Djafari-Rouhani
,
et al.
Article dans une revue
istex
hal-01481814v1
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Coarse-grained elastic networks, normal mode analysis and robotics-inspired methods for modeling protein conformational transitions
Ibrahim Al Bluwi
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
IEEE International Conference on Bioinformatics and Biomedicine Workshops , Oct 2012, Philadelphia, United States. pp.40-47,
⟨10.1109/BIBMW.2012.6470359⟩
Communication dans un congrès
hal-01981799v1
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Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods
Ibrahim Al Bluwi
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Article dans une revue
hal-01980925v1
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Combining System Design and Path Planning
Laurent Denarie
,
Kevin Molloy
,
Marc Vaisset
,
Thierry Simeon
,
Juan Cortés
Workshop on the Algorithmic Foundations of Robotics (WAFR) , Dec 2016, San Francisco, United States
Communication dans un congrès
hal-01364042v1
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Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach
Maud Jusot
,
Dirk Stratmann
,
Marc Vaisset
,
Jacques Chomilier
,
Juan Cortés
Article dans une revue
hal-01893751v1
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A Reinforcement Learning Approach to Protein Loop Modeling
Kevin Molloy
,
Nicolas Buhours
,
Marc Vaisset
,
Thierry Simeon
,
Étienne Ferré
,
et al.
IEEE/RSJ International Conference on Intelligent Robots and Systems , Sep 2015, Hamburg, Germany
Communication dans un congrès
hal-01206128v1
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Characterizing Energy Landscapes of Peptides using a Combination of Stochastic Algorithms
Didier Devaurs
,
Kevin Molloy
,
Marc Vaisset
,
Amarda Shehu
,
Thierry Simeon
,
et al.
IEEE Transactions on NanoBioscience , 2015, 14 (5), pp. 545-552
Article dans une revue
hal-01143833v1
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Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods
Amélie Barozet
,
Marc Bianciotto
,
Marc Vaisset
,
Thierry Simeon
,
Hervé Minoux
,
et al.
Article dans une revue
hal-02947409v1
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