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Balance between Coiled-Coil Stability and Dynamics Regulates Activity of BvgS Sensor Kinase in Bordetella

Elodie Lesne , Eva-Maria Krammer , Elena Dupre , Camille Locht , Marc Lensink , et al.
mBio, 2016, 7 (2), pp.e02089. ⟨10.1128/mBio.02089-15⟩
Article dans une revue hal-03171779v1
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Kinetic proofreading of chromatin remodeling: from gene activation to gene repression and back

Raghvendra Singh , Guillaume Brysbaert , Marc Lensink , Fabrizio Cleri , Ralf Blossey
AIMS Biophysics, 2015, 2 (4), pp.398-411. ⟨10.3934/biophy.2015.4.398⟩
Article dans une revue hal-03285276v1

Regulatory motifs on ISWI chromatin remodelers: molecular mechanisms and kinetic proofreading

Guillaume Brysbaert , Marc Lensink , Ralf Blossey
Journal of Physics: Condensed Matter, 2015, 27 (6), pp.064108. ⟨10.1088/0953-8984/27/6/064108⟩
Article dans une revue hal-03220230v1
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On the molecular basis of D-bifunctional protein deficiency type III

Maija L. Mehtälä , Marc Lensink , Laura P. Pietikäinen , J. Kalervo Hiltunen , Tuomo Glumoff
PLoS ONE, 2013, 8, pp.e53688. ⟨10.1371/journal.pone.0053688⟩
Article dans une revue hal-03171659v1

Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins

Saara Laulumaa , Tuomo Nieminen , Arne Raasakka , Oda Krokengen , Anushik Safaryan , et al.
BMC Structural Biology, 2018, 18 (1), ⟨10.1186/s12900-018-0087-2⟩
Article dans une revue hal-02389358v1
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Asymmetrical diversification of the receptor-ligand interaction controlling self-incompatibility in Arabidopsis

Maxime Chantreau , Céline Poux , Marc Lensink , Guillaume Brysbaert , Xavier Vekemans , et al.
Article dans une revue hal-02380744v1
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On the ability of molecular dynamics simulation and continuum electrostatics to treat interfacial water molecules in protein-protein complexes

Guillaume Copie , Fabrizio Cleri , Ralf Blossey , Marc Lensink
Scientific Reports, 2016, Scientific Reports, 6, pp.38259. ⟨10.1038/srep38259⟩
Article dans une revue hal-03158742v1

Targeting Dynamical Binding Processes in the Design of Non-Antibiotic Anti-Adhesives by Molecular Simulation—The Example of FimH

Eva-Maria Krammer , Jerome de Ruyck , Goedele Roos , Julie Bouckaert , Marc Lensink
Molecules, 2018, 23 (7), ⟨10.3390/molecules23071641⟩
Article dans une revue hal-01925060v1
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N-Glycan on the Non-Consensus N-X-C Glycosylation Site Impacts Activity, Stability, and Localization of the Sd Synthase B4GALNT2.

Virginie Cogez , Dorothee Vicogne , Celine Schulz , Lucie Portier , Giulia Venturi , et al.
International Journal of Molecular Sciences, 2023, International journal of molecular sciences, 24
Article dans une revue hal-04257639v1

Probing the conformation of FhaC with small-angle neutron scattering and molecular modeling.

Frank Gabel , Marc F Lensink , Bernard Clantin , Françoise Jacob-Dubuisson , Vincent Villeret , et al.
Biophysical Journal, 2014, 107 (1), pp.185-196. ⟨10.1016/j.bpj.2014.05.025⟩
Article dans une revue hal-01130599v1

FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility

Orly Marcu , Emma-Joy Dodson , Nawsad Alam , Michal Sperber , Dima Kozakov , et al.
Proteins, 2017, Proteins, 85 (3), pp.445-462. ⟨10.1002/prot.25230⟩
Article dans une revue hal-03158578v1
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Coiled-Coil Antagonism Regulates Activity of Venus Flytrap-Domain-Containing Sensor Kinases of the BvgS Family

Elodie Lesne , Elian Dupré , Marc Lensink , Camille Locht , Rudy Antoine , et al.
mBio, 2018, 9 (1), pp.e02052-17. ⟨10.1128/mBio.02052-17⟩
Article dans une revue hal-02121569v1
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Identification of Key Residues in Proteins Through Centrality Analysis and Flexibility Prediction with RINspector

Guillaume Brysbaert , Théo Mauri , Jerome de Ruyck , Marc Lensink
Current Protocols in Bioinformatics, 2019, 65 (1), pp.e66. ⟨10.1002/cpbi.66⟩
Article dans une revue hal-02389343v1

Membrane-associated proteins and peptides

Marc Lensink
Kukol, Andreas. Molecular Modeling of Proteins, Humana Press, pp.109-124, 2015, 978-1-4939-1465-4. ⟨10.1007/978-1-4939-1465-4_6⟩
Chapitre d'ouvrage hal-03286648v1
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Hydration sphere structure of architectural molecules: Polyethylene glycol and polyoxymethylene oligomers

Ahmed M. Rozza , Danny E.P. Vanpoucke , Eva-Maria Krammer , Julie Bouckaert , Ralf Blossey , et al.
Journal of Molecular Liquids, 2023, Journal of Molecular Liquids, 384, pp.122172. ⟨10.1016/j.molliq.2023.122172⟩
Article dans une revue hal-04161288v1
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O-GlcNAcylation Prediction: An Unattained Objective

Theo Mauri , Laurence Menu-Bouaouiche , Muriel Bardor , Tony Lefebvre , Marc Lensink , et al.
Advances and applications in bioinformatics and chemistry, 2021, 14, pp.87-102. ⟨10.2147/aabc.s294867⟩
Article dans une revue hal-03268924v1
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Identification of Novel Interaction Partners of Ets-1: Focus on DNA Repair

Guillaume Brysbaert , Jerome de Ruyck , Marc Aumercier , Marc Lensink
Genes, 2019, 10 (3), pp.206. ⟨10.3390/genes10030206⟩
Article dans une revue hal-02327233v1

The structure of the CD3ζζ transmembrane dimer in lipid bilayers

Satyan Sharma , Marc Lensink , André H. Juffer
BBA - Biochimica et Biophysica Acta, 2014, Biochimica et biophysica acta, 1838 (3), pp.739-746. ⟨10.1016/j.bbamem.2013.12.001⟩
Article dans une revue hal-03171753v1
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Synthesis and Biological Activity of a New Indenoisoquinoline Copper Derivative as a Topoisomerase I Inhibitor

Caroline Molinaro , Nathalie Wambang , Sylvain Pellegrini , Natacha Henry , Marc Lensink , et al.
International Journal of Molecular Sciences, 2023, International Journal of Molecular Sciences, 24 (19), pp.14590. ⟨10.3390/ijms241914590⟩
Article dans une revue hal-04233465v1
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TRPM8-Rap1A Interaction Sites as Critical Determinants for Adhesion and Migration of Prostate and Other Epithelial Cancer Cells

Giorgia Chinigò , Guillaume Grolez , Madelaine Audero , Alexandre Bokhobza , Michela Bernardini , et al.
Cancers, 2022, 14 (9), pp.2261. ⟨10.3390/cancers14092261⟩
Article dans une revue hal-03842400v1
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Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Marc Lensink , Guillaume Brysbaert , Théo Mauri , Nurul Nadzirin , Sameer Velankar , et al.
Proteins - Structure, Function and Bioinformatics, 2021, 89 (12), pp.1800-1823. ⟨10.1002/prot.26222⟩
Article dans une revue hal-03448743v1

Docking, scoring, and affinity prediction in CAPRI

Marc Lensink , Shoshana J. Wodak
Proteins, 2013, Proteins, 81 (12), pp.2082-2095. ⟨10.1002/prot.24428⟩
Article dans une revue istex hal-03172853v1

Score_set: a CAPRI benchmark for scoring protein complexes

Marc Lensink , Shoshana J. Wodak
Proteins, 2014, Proteins, 82 (11), pp.3163-3169. ⟨10.1002/prot.24678⟩
Article dans une revue istex hal-03172863v1
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Sites for Dynamic Protein-Carbohydrate Interactions of O- and C-Linked Mannosides on the E. coli FimH Adhesin

Mohamed Touaibia , Eva-Maria Krammer , Tze Shiao , Nao Yamakawa , Qingan Wang , et al.
Molecules, 2017, 22 (7), pp.1101. ⟨10.3390/molecules22071101⟩
Article dans une revue hal-02389369v1
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Solving the pathogenecity of TMEM16 variants using structural modeling based on AlphaFold 2 predictions

Dominique Legrand , Mélissandre Herbaut , Zoé Durin , Guillaume Brysbaert , Marc F Lensink , et al.
FEBS Open Bio, 2023, 13, pp.249. ⟨10.1002/2211-5463.13646⟩
Article dans une revue hal-04235441v1
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The Inclusion of Water Molecules in Residue Interaction Networks Identifies Additional Central Residues

Guillaume Brysbaert , Ralf Blossey , Marc Lensink
Frontiers in Molecular Biosciences, 2018, 5, ⟨10.3389/fmolb.2018.00088⟩
Article dans une revue hal-02344701v1
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Structures of C-mannosylated anti-adhesives bound to the type 1 fimbrial FimH adhesin

Jerome de Ruyck , Marc Lensink , Julie Bouckaert
International Union of Crystallography journal, 2016, 3 (Pt 3), pp.163-167. ⟨10.1107/S2052252516002487⟩
Article dans une revue hal-03171882v1
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Blind prediction of homo‐ and hetero‐ protein complexes: The CASP13‐CAPRI experiment

Marc Lensink , Guillaume Brysbaert , Nurul Nadzirin , Sameer Velankar , Raphaël A.G. Chaleil , et al.
Proteins - Structure, Function and Bioinformatics, 2019, 87 (12), pp.1200-1221. ⟨10.1002/prot.25838⟩
Article dans une revue hal-02320974v1
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Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes

Shoshana J Wodak , Sandor Vajda , Marc Lensink , Dima Kozakov , Paul A Bates
Annual Reviews of Biophysics, 2023, Annual Reviews of Biophysics, 52, pp.183-206. ⟨10.1146/annurev-biophys-102622-084607⟩
Article dans une revue hal-04257466v2
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Centrality Measures in Residue Interaction Networks to Highlight Amino Acids in Protein–Protein Binding

Guillaume Brysbaert , Marc Lensink
Frontiers in Bioinformatics, 2021, Frontiers in Bioinformatics, 1, ⟨10.3389/fbinf.2021.684970⟩
Article dans une revue hal-03373325v1