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Florent Tixier, Catherine Cheze-Le-Rest, Ulrike Schick, Brigitte Simon, Xavier Dufour, et al.. Transcriptomics in cancer revealed by Positron Emission Tomography radiomics. Scientific Reports, Nature Publishing Group, 2020, 10 (1), pp.5660. ⟨10.1038/s41598-020-62414-z⟩. ⟨inserm-02541913⟩

Mathilde Cheray, Amandine Etcheverry, Camille Jacques, Romain Pacaud, Gwenola Bougras-Cartron, et al.. Cytosine methylation of mature microRNAs inhibits their functions and is associated with poor prognosis in glioblastoma multiforme. Molecular Cancer, BioMed Central, 2020, 19 (1), pp.1-36. ⟨10.1186/s12943-020-01155-z⟩. ⟨hal-02500622⟩

Paul Peixoto, Amandine Etcheverry, Marc Aubry, Anaïs Missey, Camille Lachat, et al.. EMT is associated with an epigenetic signature of ECM remodeling genes. Cell Death and Disease, Nature Publishing Group, 2019, 10 (3), pp.205. ⟨10.1038/s41419-019-1397-4⟩. ⟨hal-02076497⟩

En-Ming Kang, An-An Yin, Ya-Long He, Wei-Jun Chen, Amandine Etcheverry, et al.. A five-CpG signature of microRNA methylation in non-G-CIMP glioblastoma. CNS Neuroscience and Therapeutics, Wiley, 2019, 25 (9), pp.937-950. ⟨10.1111/cns.13133⟩. ⟨hal-02121050⟩

An-An Yin, Ya-Long He, Amandine Etcheverry, Yu-He Liu, Marc Aubry, et al.. Novel predictive epigenetic signature for temozolomide in non-G-CIMP glioblastomas. Clinical Epigenetics, 2019, 11 (1), pp.76. ⟨10.1186/s13148-019-0670-9⟩. ⟨hal-02153239⟩

Elise Persyn, Mohamed Sassi, Marc Aubry, Martin Broly, Sandie Delanou, et al.. Rapid genetic and phenotypic changes in Pseudomonas aeruginosa clinical strains during ventilator-associated pneumonia. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.4720. ⟨10.1038/s41598-019-41201-5⟩. ⟨hal-02086609⟩

Jean-Michel Lemée, Anne Clavreul, Marc Aubry, Emmanuelle Com, Marie de Tayrac, et al.. Integration of transcriptome and proteome profiles in glioblastoma looking for the missing link. BMC Molecular Biology, BioMed Central, 2018, 19 (1), pp.13. ⟨10.1186/s12867-018-0115-6⟩. ⟨hal-01940252⟩

An-An Yin, Nan Lu, Amandine Etcheverry, Marc Aubry, Jill Barnholtz-Sloan, et al.. A novel prognostic six-CpG signature in glioblastomas. CNS Neuroscience and Therapeutics, Wiley, 2018, 24 (3), pp.167-177. ⟨10.1111/cns.12786⟩. ⟨hal-01711026⟩

Marc Aubry, A. Laughhunn, F. Santa Maria, M. C. Lanteri, A. Stassinopoulos, et al.. Amustaline (S-303) treatment inactivates high levels of Chikungunya virus in red-blood-cell components. Vox Sanguinis, Wiley, 2018, 113 (3), pp.232-241. ⟨10.1111/vox.12626⟩. ⟨hal-01789241⟩

Annabelle Monnier, Rachel Boniface, Régis Bouvet, Amandine Etcheverry, Marc Aubry, et al.. The expression of EMX2 lead to cell cycle arrest in glioblastoma cell line. BMC Cancer, BioMed Central, 2018, 18 (1), pp.1213. ⟨10.1186/s12885-018-5094-y⟩. ⟨hal-01972440⟩

A. Yin, A. Etcheverry, Y. He, Marc Aubry, J. Barnholtz-Sloan, et al.. Integrative analysis of novel hypomethylation and gene expression signatures in glioblastomas. Oncotarget, Impact journals, 2017, 8 (52), pp.89607-89619. ⟨10.18632/oncotarget.19171⟩. ⟨hal-01647188⟩

Ophélie Caillot, Marc Aubry, Solène Duros, Laurence Boyer, Claude van Valenberg, et al.. Impact of the French 3rd and 4th generation pill scare in women seeking termination of pregnancy. Journal de Gynécologie Obstétrique et Biologie de la Reproduction, Elsevier Masson, 2017, 46 (1), pp.69-76. ⟨10.1016/j.jgyn.2016.03.014⟩. ⟨hal-01308004⟩

Nathalie Bonnin, Emma Armandy, Julien Carras, Sylvain Ferrandon, Priscillia Battiston-Montagne, et al.. MiR-422a promotes loco-regional recurrence by targeting NT5E/CD73 in head and neck squamous cell carcinoma. Oncotarget, Impact journals, 2016, 7 (28), pp.44023-44038. ⟨10.18632/oncotarget.9829⟩. ⟨hal-01376219⟩

Camille C Savary, Xiaoqi Jiang, Marc Aubry, Rozenn Jossé, Annette Kopp-Schneider, et al.. Transcriptomic analysis of untreated and drug-treated differentiated HepaRG cells over a 2-week period.. Toxicology in Vitro, Elsevier, 2015, 30 (1), pp.27-35. ⟨10.1016/j.tiv.2014.12.019⟩. ⟨hal-01128182⟩

Jean-Michel Lemée, Anne Clavreul, Marc Aubry, Emmanuelle Com, Marie de Tayrac, et al.. Characterizing the peritumoral brain zone in glioblastoma: a multidisciplinary analysis.. Journal of Neuro-Oncology, Springer Verlag, 2015, 122 (1), pp.53-61. ⟨10.1007/s11060-014-1695-8⟩. ⟨hal-01117083⟩

Denis Habauzit, Catherine Le Quement, Maxim Zhadobov, C Martin, Marc Aubry, et al.. Transcriptome analysis reveals the contribution of thermal and the specific effects in cellular repsonse to millimeter wave exposure. PLoS ONE, Public Library of Science, 2014, 9, 10. ⟨hal-01114575⟩

Amandine Etcheverry, Marc Aubry, Ahmed Idbaih, Elodie Vauleon, Yannick Marie, et al.. DGKI Methylation Status Modulates the Prognostic Value of MGMT in Glioblastoma Patients Treated with Combined Radio-Chemotherapy with Temozolomide. PLoS ONE, Public Library of Science, 2014, 9 (9), pp.e104455. ⟨10.1371/journal.pone.0104455⟩. ⟨hal-01358132⟩

Marine Pesson, Alain Volant, Arnaud Uguen, Kilian Trillet, Pierre de la Grange, et al.. A gene expression and pre-mRNA splicing signature that marks the adenoma-adenocarcinoma progression in colorectal cancer.. PLoS ONE, Public Library of Science, 2014, 9 (2), pp.e87761. ⟨10.1371/journal.pone.0087761⟩. ⟨hal-00976068⟩

Marc Aubry, M. de Tayrac, A. Etcheverry, A. Clavreul, S. Saikali, et al.. 'From the core to beyond the margin': a genomic picture of glioblastoma intratumor heterogeneity. Neuro-Oncology, Oxford University Press (OUP), 2014, 16 (suppl 2), pp.ii7. ⟨10.1093/neuonc/nou174.25⟩. ⟨hal-01117090⟩

Marie de Tayrac, Stephan Saikali, Marc Aubry, Pascale Bellaud, Rachel Boniface, et al.. Prognostic Significance of EDN/RB, HJURP, p60/CAF-1 and PDLI4, Four New Markers in High-Grade Gliomas.. PLoS ONE, Public Library of Science, 2013, 8 (9), pp.e73332. ⟨10.1371/journal.pone.0073332⟩. ⟨hal-00876093⟩

Denis Habauzit, Catherine Le Quément, Maxim Zhadobov, Catherine Martin, Marc Aubry, et al.. Transcriptome analysis reveals the contribution of thermal and the specific effects in cellular response to millimeter wave exposure.. PLoS ONE, Public Library of Science, 2013, 9 (10), pp.e109435. ⟨10.1371/journal.pone.0109435⟩. ⟨hal-01118066⟩

Mathilde Doyard, Nadia Fatih, Annabelle Monnier, Marie-Laure Island, Marc Aubry, et al.. Iron excess limits HHIPL-2 gene expression and decreases osteoblastic activity in human MG-63 cells.. Osteoporosis International, Springer Verlag, 2012, 23 (10), pp.2435-2445. ⟨10.1007/s00198-011-1871-z⟩. ⟨inserm-00662108⟩

Catherine Le Quément, Christophe Nicolas Nicolaz, Maxim Zhadobov, Fabienne Desmots, Ronan Sauleau, et al.. Whole-genome expression analysis in primary human keratinocyte cell cultures exposed to 60 GHz radiation.. Bioelectromagnetics, Wiley, 2012, 33 (2), pp.147-158. ⟨10.1002/bem.20693⟩. ⟨inserm-00699884⟩

Marie de Tayrac, Marc Aubry, Stephan Saïkali, Amandine Etcheverry, Cyrille Surbled, et al.. A 4-gene signature associated with clinical outcome in high-grade gliomas.. Clinical Cancer Research, American Association for Cancer Research, 2011, 17 (2), pp.317-27. ⟨10.1158/1078-0432.CCR-10-1126⟩. ⟨inserm-00545436⟩

Virginie Gandemer, Marc Aubry, Mikael Roussel, Anne-Gaelle Rio, Marie de Tayrac, et al.. CD9 expression can be used to predict childhood TEL/AML1-positive acute lymphoblastic leukemia: proposal for an accelerated diagnostic flowchart.. Leukemia Research, Elsevier, 2010, 34 (4), pp.430-7. ⟨10.1016/j.leukres.2009.09.033⟩. ⟨inserm-00435146⟩

Amandine Etcheverry, Marc Aubry, Marie de Tayrac, Elodie Vauleon, Rachel Boniface, et al.. DNA methylation in glioblastoma: impact on gene expression and clinical outcome.. BMC Genomics, BioMed Central, 2010, 11 (1), pp.701. ⟨10.1186/1471-2164-11-701⟩. ⟨inserm-00663706⟩

Marie de Tayrac, Sébastien Lê, Marc Aubry, Jean Mosser, François Husson. Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach.. BMC Genomics, BioMed Central, 2009, 10, pp.32. ⟨10.1186/1471-2164-10-32⟩. ⟨inserm-00365978⟩

Marie de Tayrac, Amandine Etcheverry, Marc Aubry, Stephan Saïkali, Abderrahmane Hamlat, et al.. Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression.. Genes, Chromosomes and Cancer, Wiley, 2009, 48 (1), pp.55-68. ⟨10.1002/gcc.20618⟩. ⟨inserm-00352960⟩

Colette Désert, Michel J Duclos, Pierre Blavy, Frédéric Lecerf, François Moreews, et al.. Transcriptome profiling of the feeding-to-fasting transition in chicken liver.. BMC Genomics, BioMed Central, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩. ⟨hal-00729919⟩

Marc Aubry, Annabelle Monnier, Céline Chicault, Marie-Dominique Galibert, Anita Burgun, et al.. Iron-related transcriptomic variations in Caco-2 cells: in silico perspectives.. Biochimie, Elsevier, 2008, 90 (4), pp.669-78. ⟨10.1016/j.biochi.2008.01.002⟩. ⟨hal-00235440⟩

N. Burnichon, P. Lacan, M. Becchi, I. Zanella-Cleon, Marc Aubry, et al.. A new alpha chain hemoglobin variant: Hb Al-Hammadi Riyadh [alpha75(EF4)Asp-->Val (alpha2)].. Hemoglobin, Informa Healthcare, 2006, 30, pp.155-164. ⟨hal-00313098⟩

Céline Chicault, Bertrand Toutain, Annabelle Monnier, Marc Aubry, Patricia Fergelot, et al.. Iron-related transcriptomic variations in CaCo-2 cells, an in vitro model of intestinal absorptive cells.. Physiological Genomics, American Physiological Society, 2006, 26(1), pp.55-67. ⟨10.1152/physiolgenomics.00297.2005⟩. ⟨hal-00090513⟩

Emmanuelle Abgueguen, Bertrand Toutain, Hélène Bédrine, Céline Chicault, Magali Orhant, et al.. Differential expression of genes related to HFE and iron status in mouse duodenal epithelium.. Mammalian Genome, Springer Verlag, 2006, 17, pp.430-450. ⟨10.1007/s00335-005-0122-z⟩. ⟨hal-00085719⟩

Marc Aubry, Annabelle Monnier, Céline Chicault, Marie de Tayrac, Marie-Dominique Galibert, et al.. Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.. BMC Bioinformatics, BioMed Central, 2006, 7, pp.241. ⟨10.1186/1471-2105-7-241⟩. ⟨hal-00094484⟩

P. Lacan, N. Burnichon, M. Becchi, I. Zanella-Cleon, Marc Aubry, et al.. A new G(gamma) chain variant: Hb F-Bron [gamma20(B2)val-->Ala].. Hemoglobin, Informa Healthcare, 2005, 29, pp.301-305. ⟨hal-00314096⟩

P. Lacan, M. Moreau, M. Becchi, I. Zanella-Cleon, Marc Aubry, et al.. Two new hemoglobin variants: Hb Brem-sur-Mer [beta9(A6)Ser-->Tyr] and Hb Passy [alpha81(F2)Ser-->Pro (alpha2)].. Hemoglobin, Informa Healthcare, 2005, 29, pp.69-75. ⟨hal-00314098⟩

P. Lacan, M. Becchi, I. Zanella-Cleon, Marc Aubry, D. Quinsat, et al.. Identification by mass spectrometry of a hemoglobin variant with an elongated beta-globin chain.. Clin Chem, 2005, 51, pp.213-215. ⟨hal-00313099⟩

P. Lacan, M. Becchi, I. Zanella-Cleon, Marc Aubry, M. Ffrench, et al.. Two new beta-chain variants: Hb Tripoli [beta26(B8)Glu-->Ala] and Hb Tizi-Ouzou [beta29(B11)Gly-->Ser].. Hemoglobin, Informa Healthcare, 2004, 28, pp.205-212. ⟨hal-00314099⟩

P. Lacan, M. Becchi, I. Zanella-Cleon, Marc Aubry, P. Renaudier, et al.. Two new alpha chain variants: Hb Part-Dieu [alpha65(E14)Ala --> Thr (alpha2)] and Hb Decines-Charpieu [alpha69(E18)Ala --> Thr (alpha2)].. Hemoglobin, Informa Healthcare, 2004, 28, pp.51-57. ⟨hal-00313100⟩

P. Lacan, A. Francina, G. Souillet, Marc Aubry, N. Couprie, et al.. Two new alpha chain variants: Hb Boghe [alpha58(E7)His-->Gln, alpha2], a variant on the distal histidine, and Hb CHarolles [alpha103(G10)His-Tyr, alpha1].. Hemoglobin, Informa Healthcare, 1999, 23, pp.345-352. ⟨hal-00314105⟩

P. Lacan, Marc Aubry, A. Francina, N. Couprie, L. Dementhon, et al.. Characterization of Hb Djelfa [beta98(FG5)Val-->Ala]] by DNA sequencing in a French Caucasian family.. Hemoglobin, Informa Healthcare, 1999, 23, pp.73-77. ⟨hal-00313102⟩

Marc Aubry, P. Boucrot. Devenir digestif de la viciline et de la lectine radiomarquées du pois (Pisum sativum) chez le rats. Reproduction Nutrition Développement, 1985, 25 (4B), pp.844-844. ⟨hal-00898343⟩

Marc Aubry, Marie de Tayrac, Stephan Saïkali, Amandine Etcheverry, Abderrahmane Hamlat, et al.. A Four-Gene Signature Associated with Clinical Outcome in High-Grade Gliomas.. 9th Meeting of The European Association of NeuroOncology, Sep 2010, Maastricht, Netherlands. pp.iii5 O.16, ⟨10.1093/neuonc/noq085⟩. ⟨inserm-00550559⟩

Jean Mosser, Amandine Etcheverry, Stephan Saikali, Marc Aubry, Abderrahmane Hamlat, et al.. Integration of Genomic Alterations and Expression Profiling in Glioblastoma Multiforme.. 3rd Quadrennial Meeting of the World-Federation-of-Neuro-Oncoloyg/6th Meeting of the Asian-Society-for-Neuro-Oncology, Apr 2009, Yokohama, Japan. pp.890 O59. ⟨inserm-00550564⟩

Marie de Tayrac, Marc Aubry, Stephan Saikali, Cyrille Surbled, Rachel Boniface, et al.. Gene Expression Meta-Analysis Identifies Grading and Survival Markers in Anaplastic Glioma.. 3rd Quadrennial Meeting of the World-Federation-of-Neuro-Oncoloyg/6th Meeting of the Asian-Society-for-Neuro-Oncology, Apr 2009, Yokohama, Japan. pp.925 P47. ⟨inserm-00550572⟩

Christophe Klopp, Francois Moreews, Marc Aubry, Sandrine Lagarrigue. Contribution To The Annotations Of The Chicken 20K Oligo Microarray Of ARK-Genomics. International Plant & Animal Genomes XVI Conference, Jan 2008, San Diego, United States. ⟨inria-00329915⟩

Marc Aubry, Colette Désert, P. Blavy, Frédéric Lecerf, M. Duclos, et al.. Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France. ⟨hal-00729786⟩

C. Klopp, F. Moreews, Marc Aubry, Sandrine Lagarrigue. Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomics. Plant & Animal Genomes, XVI Conference, Jan 2008, San Diego (US), United States. ⟨hal-00729110⟩

Jean Mosser, Amandine Etcheverry, Marc Aubry, Jean-Yves Delattre. Biomarkers and methods for the prognosis of glioblastoma. United States, Patent n° : US20140011702 A1. 2014. ⟨hal-01117125⟩

Jean Mosser, Marie De Tayrac, Marc Aubry. Biomarkers for the prognosis and high-grade glioma clinical outcome. United States, Patent n° : 20120129711. 2012. ⟨hal-01117079⟩