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Number of documents

75

marc allain


Preprints, Working Papers, ...4 documents

  • Thomas Mangeat, Simon Labouesse, Marc Allain, Emmanuel Martin, Renaud Poincloux, et al.. Super-resolved live-cell imaging using Random Illumination Microscopy. 2021. ⟨hal-03101965⟩
  • Peng Li, Nicholas Phillips, Steven Leake, Marc Allain, Felix Hofmann, et al.. Revealing ‘invisible’ defects in implanted material with 3D Bragg ptychography. 2020. ⟨hal-02925871⟩
  • Thomas Mangeat, Simon Labouesse, Marc Allain, Emmanuel Martin, Renaud Poincloux, et al.. Super-resolved live-cell imaging using Random Illumination Microscopy. 2020. ⟨hal-02564126⟩
  • Thomas Mangeat, Simon Labouesse, Marc Allain, Emmanuel Martin, Renaud Poincloux, et al.. Super-resolved live-cell imaging using Random Illumination Microscopy. 2020. ⟨hal-03013837⟩

Journal articles34 documents

  • S. Maddali, P. Li, A. Pateras, D. Timbie, N. Delegan, et al.. General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part I. Journal of Applied Crystallography, International Union of Crystallography, 2020, 53 (2), pp.393-403. ⟨10.1107/S1600576720001363⟩. ⟨hal-02537399⟩
  • Siddharth Maddali, Marc Allain, Peng Li, Virginie Chamard, Stephan O. Hruszkewycz. Detector tilt considerations in high-energy Bragg coherent diffraction imaging: a simulation study. Crystals, MDPI, 2020, 10 (12), pp.1150. ⟨10.3390/cryst10121150⟩. ⟨hal-02933941⟩
  • P. Li, S. Maddali, A. Pateras, I. Calvo-Almazán, S.O. Hruszkewycz, et al.. General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part II. Journal of Applied Crystallography, International Union of Crystallography, 2020, 53 (2), pp.404-418. ⟨10.1107/S1600576720001375⟩. ⟨hal-02537405⟩
  • Arthur Baroni, Marc Allain, Peng Li, Virginie Chamard, Patrick Ferrand. Joint estimation of object and probes in vectorial ptychography. Optics Express, Optical Society of America - OSA Publishing, 2019, 27 (6), pp.8143. ⟨10.1364/OE.27.008143⟩. ⟨hal-02059897⟩
  • I. Calvo-Almazán, Marc Allain, S. Maddali, Virginie Chamard, S. Hruszkewycz. Impact and mitigation of angular uncertainties in Bragg coherent x-ray diffraction imaging. Scientific Reports, Nature Publishing Group, 2019, 9, pp.6386. ⟨10.1038/s41598-019-42797-4⟩. ⟨hal-02107745⟩
  • S. Maddali, Marc Allain, W. Cha, R. Harder, S. Park, et al.. Phase retrieval for Bragg coherent diffraction imaging at high x-ray energies. Physical Review A, American Physical Society, 2019, 99 (5), pp.053838. ⟨10.1103/PhysRevA.99.053838⟩. ⟨hal-02139472⟩
  • Saugat Kandel, S. Maddali, Marc Allain, Stephan Hruszkewycz, Chris Jacobsen, et al.. Using automatic differentiation as a general framework for ptychographic reconstruction. Optics Express, Optical Society of America - OSA Publishing, 2019, 27 (13), pp.18653. ⟨10.1364/OE.27.018653⟩. ⟨hal-02163380⟩
  • Megan Hill, Irene Calvo-Almazan, Marc Allain, Martin Holt, Andrew Ulvestad, et al.. Measuring three dimensional strain and structural defects in a single InGaAs nanowire using coherent x-ray multi-angle Bragg projection ptychography. Nano Letters, American Chemical Society, 2018, 18 (2), pp.811-819. ⟨10.1021/acs.nanolett.7b04024⟩. ⟨hal-01687989⟩
  • Patrick Ferrand, Arthur Baroni, Marc Allain, Virginie Chamard. Quantitative imaging of anisotropic material properties with vectorial ptychography. Optics Letters, Optical Society of America - OSA Publishing, 2018, 43 (4), pp.763-766. ⟨10.1364/OL.43.000763⟩. ⟨hal-01653296⟩
  • Awoke Negash, Simon Labouesse, Patrick Chaumet, Kamal Belkebir, Hugues Giovannini, et al.. Two-photon speckle illumination for super-resolution microscopy. Journal of the Optical Society of America. A Optics, Image Science, and Vision, Optical Society of America, 2018, 35 (6), ⟨10.1364/JOSAA.35.001028⟩. ⟨hal-01838129⟩
  • Jérôme Idier, Simon Labouesse, Marc Allain, Penghuan Liu, Sébastien Bourguignon, et al.. On the super-resolution capacity of imagers using unknown speckle illuminations. IEEE Transactions on Computational Imaging, IEEE, 2018, 4 (1), pp.87 - 98. ⟨10.1109/TCI.2017.2771729⟩. ⟨hal-01652762⟩
  • S. O. Hruszkewycz, Marc Allain, M. V. Holt, C. E. Murray, J. R. Holt, et al.. High-resolution three-dimensional structural microscopy by single-angle Bragg ptychography. Nature Materials, Nature Publishing Group, 2017, 16, pp.244-251. ⟨10.1038/nmat4798⟩. ⟨hal-01252892⟩
  • Francesca Mastropietro, Pierre Godard, Manfred Burghammer, Corinne Chevallard, Jean Daillant, et al.. Revealing crystalline domains in a mollusc shell single-crystalline prism. Nature Materials, Nature Publishing Group, 2017, 16, pp.946-952. ⟨10.1038/nmat4937⟩. ⟨hal-01559691⟩
  • A. Negash, S. Labouesse, Nicolas Sandeau, Marc Allain, Hugues Giovannini, et al.. Improving the axial and lateral resolution of three-dimensional fluorescence microscopy using random speckle illuminations. Journal of the Optical Society of America. A, Optics and image science, Optical Society of America, 2016, 33, pp.1089-1094. ⟨10.1364/JOSAA.33.001089⟩. ⟨hal-01314573⟩
  • W. Cha, A. Ulvestad, Marc Allain, Virginie Chamard, R. Harder, et al.. Three dimensional variable-wavelength x-ray Bragg coherent diffraction imaging. Physical Review Letters, American Physical Society, 2016, 117, pp.225501. ⟨10.1103/PhysRevLett.117.225501⟩. ⟨hal-01397101⟩
  • Thomas Chaigne, Jérôme Gateau, Marc Allain, Ori Katz, Anne Sentenac, et al.. Super-resolution photoacoustic fluctuation imaging with multiple speckle illumination. Optica, Optical Society of America - OSA Publishing, 2016, 3 (1), pp.54-57. ⟨10.1364/OPTICA.3.000054⟩. ⟨hal-01634450⟩
  • Ting Zhang, Charankumar Godavarthi, Patrick C. Chaumet, Guillaume Maire, Hugues Giovannini, et al.. Far-field diffraction microscopy at λ/10 resolution. Optica, Optical Society of America - OSA Publishing, 2016, 3 (6), pp.609-612. ⟨10.1364/OPTICA.3.000609⟩. ⟨hal-01328835⟩
  • Anastasios I. Pateras, Marc Allain, Pierre Godard, L. Largeau, G. Patriarche, et al.. Nondestructive three-dimensional imaging of crystal strain and rotations in an extended bonded semiconductor heterostructure. Physical Review B: Condensed Matter and Materials Physics (1998-2015), American Physical Society, 2015, 92 (20), pp.205305. ⟨10.1103/PhysRevB.92.205305⟩. ⟨hal-01218363v2⟩
  • S. O. Hruszkewycz, M. V. Holt, Marc Allain, Virginie Chamard, S. M. Polvino, et al.. Efficient modeling of Bragg coherent x-ray nanobeam diffraction. Optics Letters, Optical Society of America - OSA Publishing, 2015, 40 (14), pp.3241-3244. ⟨10.1364/OL.40.003241⟩. ⟨hal-01252899⟩
  • Virginie Chamard, Marc Allain, P. Godard, A. Talneau, G. Patriarche, et al.. Strain in a silicon-on-insulator nanostructure revealed by 3D x-ray Bragg ptychography. Scientific Reports, Nature Publishing Group, 2015, 5, pp.9827. ⟨10.1038/srep09827⟩. ⟨hal-01205699⟩
  • Patrick Ferrand, Marc Allain, Virginie Chamard. Ptychography in anisotropic media. Optics Letters, Optical Society of America - OSA Publishing, 2015, 40 (22), pp.5144-5147. ⟨10.1364/OL.40.005144⟩. ⟨hal-01213942⟩
  • F. Berenguer, Pierre Godard, Marc Allain, J.-M. Belloir, A. Talneau, et al.. X-ray lensless microscopy from undersampled diffraction intensities. Physical Review B: Condensed Matter and Materials Physics (1998-2015), American Physical Society, 2013, 88, pp.144101-1. ⟨10.1103/PhysRevB.88.144101⟩. ⟨hal-00870328⟩
  • Emeric Mudry, Kamal Belkebir, J. Girard, Julien Savatier, Emmeran Le Moal, et al.. Structured illumination microscopy using unknown speckle patterns. Nature Photonics, Nature Publishing Group, 2012, 6 (5), pp.312-315. ⟨10.1038/nphoton.2012.83⟩. ⟨hal-00738270⟩
  • Pierre Godard, Marc Allain, Virginie Chamard, J. Rodenburg. Noise models for low counting rate coherent diffraction imaging. Optics Express, Optical Society of America - OSA Publishing, 2012, 20, pp.25914-25934. ⟨10.1364/OE.20.025914⟩. ⟨hal-00870322⟩
  • Frédéric Galland, Arnaud Jaegler, Marc Allain, David Savery, Philippe Réfrégier. Smooth contour coding with minimal description length active grid segmentation techniques. Pattern Recognition Letters, Elsevier, 2011, 32 (5), pp.721-730. ⟨10.1016/j.patrec.2010.12.007⟩. ⟨hal-00649542⟩
  • Pierre Godard, Marc Allain, Virginie Chamard. Imaging of highly inhomogeneous strain field in nanocrystals using x-ray Bragg ptychography: A numerical study. Physical Review B: Condensed Matter and Materials Physics (1998-2015), American Physical Society, 2011, 84 (14), pp.144109. ⟨10.1103/PhysRevB.84.144109⟩. ⟨hal-00649563⟩
  • Pierre Godard, G. Carbone, Marc Allain, Francesca Mastropietro, G. Chen, et al.. Three-dimensional high-resolution quantitative microscopy of extended crystals. Nature Communications, Nature Publishing Group, 2011, 2, pp.568. ⟨10.1038/ncomms1569⟩. ⟨hal-00738278⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, M. Massonneau, Rémi Carminati. Cramer-Rao analysis of steady-state and time-domain fluorescence diffuse optical imaging. Biomedical optics express, Optical Society of America - OSA Publishing, 2011, pp.1626-36. ⟨10.1364/BOE.2.001626⟩. ⟨hal-00649575⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, M. Massonneau, Rémi Carminati. Analysis of the depth resolution limit of luminescence diffuse optical imaging. Optics Letters, Optical Society of America - OSA Publishing, 2008, 33 (19), pp.2290-2292. ⟨10.1364/OL.33.002290⟩. ⟨hal-00325688⟩
  • Marc Allain, Jérôme Idier. Efficient binary reconstruction for non destructive evaluation using gammagraphy. Inverse Problems, IOP Publishing, 2007, 23 (4), pp.1371-1393. ⟨10.1088/0266-5611/23/4/002⟩. ⟨hal-00400661⟩
  • Marc Allain, Jérôme Idier. Efficient binary reconstruction for non destructive evaluation using gammagraphy. Inverse Problems, IOP Publishing, 2007, 23 (4), pp.1371-1393. ⟨10.1088/0266-5611/23/4/002⟩. ⟨hal-00147782⟩
  • Marc Allain, Jérôme Idier, Yves Goussard. On global and local convergence of half-quadratic algorithms. IEEE Transactions on Image Processing, Institute of Electrical and Electronics Engineers, 2006, 15 (5), pp.1130-1142. ⟨10.1109/TIP.2005.864173⟩. ⟨hal-00400663⟩
  • Marc Allain, Jean-Pierre Roques. Imaging techniques for gamma-ray diffuse emission: application to INTEGRAL/SPI. Astronomy and Astrophysics - A&A, EDP Sciences, 2006, 447 (3), pp.1175-1187. ⟨10.1051/0004-6361:20042513⟩. ⟨hal-00457476⟩
  • Marc Allain, J. P. Roques. Imaging Techniques for gamma-ray diffuse emission: Application to INTEGRAL/SPI. Astronomy and Astrophysics - A&A, EDP Sciences, 2005, in press. ⟨hal-00013211⟩

Conference papers32 documents

  • Simon Labouesse, Jérôme Idier, Anne Sentenac, Thomas Mangeat, Marc Allain. Random Illumination Microscopy from Variance Images. EUSIPCO 2020, Jan 2021, Amsterdam, Denmark. ⟨hal-03010108⟩
  • Arthur Baroni, Marc Allain, Peng Li, Virginie Chamard, Patrick Ferrand. Quantitative structural imaging of biominerals by vectorial ptychography. 14th International Coral Reef Symposium (ICRS 2020) (cancelled Covid-19), Jul 2020, Bremen, Germany. ⟨hal-02537368⟩
  • Arthur Baroni, Marc Allain, Peng Li, Virginie Chamard, Patrick Ferrand. Progress in vectorial ptychography: towards quantitative structural imaging of biominerals. Microscience Microscopy Congress 2019 (mmc2019), Jul 2019, Manchester, United Kingdom. ⟨hal-02106850⟩
  • Peng Li, Felix Hofmann, Steven Leake, Marc Allain, Virginie Chamard. Multi-angle Bragg projection ptychography with probe retrieval. The Minerals, Metals & Materials Society Annual Meeting (TMS2019), Mar 2019, San Antonio, TX, United States. ⟨hal-02068490⟩
  • Arthur Baroni, Marc Allain, Peng Li, Virginie Chamard, Patrick Ferrand. Quantitative imaging of anisotropic materials by vectorial ptychography. Focus on Microscopy (FOM 2019), Apr 2019, Londres, United Kingdom. ⟨hal-02068493⟩
  • Marc Allain, S. O. Hruszkewycz, Virginie Chamard. Bragg Geometry X-ray Coherent Diffraction Imaging: Know before you go.... Coherence 2018: International Workshop on Phase Retrieval and Coherent Scattering, Jun 2018, Port Jefferson, NY, United States. ⟨hal-01872043⟩
  • Arthur Baroni, Patrick Ferrand, Marc Allain, Virginie Chamard. Microscopie de biréfringence par ptychographie vectorielle. 13e journées Imagerie Optique Non Conventionnelle (JOINC), Mar 2018, Paris, France. ⟨hal-01743528⟩
  • Peng Li, Marc Allain, Chan Kim, Anders Madsen, Virginie Chamard. Characterising the illumination function for Bragg ptychography microscopy. ESRF User Meeting 2018, Feb 2018, Grenoble, France. ⟨hal-01698456⟩
  • Penghuan Liu, Jérôme Idier, Sébastien Bourguignon, Simon Labouesse, Marc Allain, et al.. Minimum contrast estimation for super-resolution fluorescence microscopy using speckle patterns. GRETSI, Sep 2017, Juan-Les-Pins, France. ⟨hal-01762453⟩
  • A. Troian, Marc Allain, S. Matsen, V. L. R. Jacques, B. Noheda, et al.. Domain structure retrieval of a simulated ferroelectric film via 3D Bragg ptychography. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France. ⟨hal-01328517⟩
  • A. I. Pateras, Marc Allain, P. Godard, L. Largeau, G. Patriarche, et al.. Three-dimensional in operando imaging of a semiconductor heterostructure through X-ray Bragg ptychography. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France. ⟨hal-01328800⟩
  • S. Labouesse, Marc Allain, A. Negash, P. Liu, A. Sentenac, et al.. Fluorescence blind structured illumination microscopy: a new reconstruction strategy. IEEE International Conference on Image Processing, IEEE, Sep 2016, Phoenix, United States. ⟨hal-01264977v2⟩
  • Francesca Mastropietro, Marc Allain, M. Burghammer, Corinne Chevallard, A. Talneau, et al.. Revealing the meso-crystallinity arrangement of a "single-crystalline" calcareous biomineral. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France. ⟨hal-01328816⟩
  • Simon Labouesse, Jérôme Idier, Penghuan Liu, Marc Allain, Sébastien Bourguignon, et al.. Super-resolution capacity of imagers using random illuminations. OSA Conference : Imaging and Applied Optics, 2016, Heidelberg, Germany. ⟨hal-02582803⟩
  • Penghuan Liu, Sébastien Bourguignon, Jérôme Idier, Marc Allain, Simon Labouesse, et al.. A marginal image reconstruction approach in fluorescence microscopy with pseudo-random illumination patterns. OSA Conference : Imaging and Applied Optics, 2016, Heidelberg, Germany. ⟨hal-02582750⟩
  • Patrick Ferrand, Marc Allain, Virginie Chamard. Coherent imaging with polarized probes: when to go for vectorial?. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France. ⟨hal-01313081⟩
  • F. Mastropietro, P. Godard, Marc Allain, J.-P. Cuif, Y. Dauphin, et al.. Anisotropic distribution of orientations of crystalline domains in calcite bio-minerals revealed by high-resolution x-ray diffraction microscopy. ESRF User meeting, ESRF, Feb 2015, Grenoble, France. ⟨hal-01254212⟩
  • Simon Labouesse, Marc Allain, Jérôme Idier, Sébastien Bourguignon, Penghuan Liu, et al.. Blind fluorescence structured illumination microscopy: A new reconstruction strategy. Actes du 25e colloque GRETSI, 2015, Lyon, France. ⟨hal-02582220⟩
  • F. Mastropietro, P. Godard, Marc Allain, J.-P. Cuif, Y. Dauphin, et al.. Reticulated nanostructures in calcareous biocrystals imaged by 3D ptychography. 12th biennal conference on on High-resolution X-ray Diffraction and Imaging (XTOP 2014), Sep 2014, Vilards de Lans, France. ⟨hal-01254214⟩
  • F. Mastropietro, P. Godard, Marc Allain, J.-P. Cuif, Y. Dauphin, et al.. Reticulated nanostructures in calcareous biocrystals imaged by 3D ptychography. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2014), Argonne National Laboratory, Sep 2014, Chicago, IL, United States. ⟨hal-01254215⟩
  • A. Pateras, Marc Allain, P. Godard, F. Mastropietro, L. Largeau, et al.. Strain imaging of an InP nanostructured thin film by 3D X-Ray Bragg Ptychography. International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2014), Argonne National Laboratory, Sep 2014, Chicago, IL, United States. ⟨hal-01254217⟩
  • Roland Ayuk, Emeric Mudry, Kamal Belkebir, Jules Girard, Anne Sentenac, et al.. Blind structured illumination microscopy with distorted light grids. Focus On Microscopy, Mar 2013, Maastricht, Netherlands. ⟨hal-00941740⟩
  • Virginie Chamard, Marc Allain, P. Godard, A. Talneau, M. Burghammer, et al.. Three-dimensional microscopy of shape, density and strain in a nano-structured crystal using Bragg Ptychography: methodological aspects. International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan. ⟨hal-01254535⟩
  • P. Godard, G. Carbone, Marc Allain, F. Mastropietro, G. Chen, et al.. Three-dimensional high-resolution quantitative microscopy of extended crystals. International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan. ⟨hal-01254536⟩
  • Marc Allain, P. Godard, A. Talneau, M. Burghammer, J. Daillant, et al.. Noise-model dependent iterative algorithms for Coherent Diffractive Imaging with low counting rate. International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan. ⟨hal-01254541⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Luminescence diffuse optical tomography on a reflectance imaging set-up. 12th European Quantum Electronics Conference CLEO EUROPE/EQEC, May 2011, Munich, France. ⟨10.1109/CLEOE.2011.5943310⟩. ⟨hal-01688633⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Intrinsic precision limit in steady-state and time-domain fluorescence diffuse optical imaging. 12th European Quantum Electronics Conference CLEO EUROPE/EQEC, May 2011, Munich, France. ⟨10.1109/CLEOE.2011.5943248⟩. ⟨hal-01688630⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Limite de précision pour la tomographie optique diffuse de fluorescence en régime continu et temporel.. Journées thématiques du GDR Ondes 2011, 2011, Paris, France. ⟨hal-01688496⟩
  • Virginie Chamard, Marc Allain. Strain at the nanoscale revealed by 3D lens-less x-ray microscopy. 2nd Congress and General Assembly of the International Union of Crystallography, International Union of Crystallography, Aug 2011, Madrid, Spain. ⟨hal-01253325⟩
  • Frédéric Galland, Philippe Réfrégier, Nicolas Bertaux, Marc Allain, Arnaud Jaegler, et al.. Une revue de quelques applications de la minimisation de la complexité stochastique pour la segmentation d'images par grille active. Journées de probabilité - sélection de modèles, Jun 2009, Poitiers, France. ⟨hal-00438728⟩
  • Marc Allain, Nicolas Bertaux, Frédéric Galland. Nonparametric level-set segmentation based on the minimization of the stochastic complexity. Advanced Concepts for Intelligent Vision Systems Acivs 2008, Oct 2008, Juan les Pins, France. pp.506-517. ⟨hal-00349861⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Rémi Carminati, Marc Massonneau. Determination of the depth resolution limit of fluorescence diffuse optical tomography.. TOPIM2008, Feb 2008, Les Houches, France. ⟨hal-01688492⟩

Poster communications3 documents

  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Sensitivity analysis of fluorescence signals for diffuse optical imaging of small animals. Biomedical Optics (BIOMED 2008), 2008, Saint Petersburg (Florida), United States. ⟨hal-01688614⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Methodology for the determination of the resolution limit of fluorescence diffuse optical tomography. World Molecular Imaging Congress (WMIC 2008), 2008, Nice, France. ⟨hal-01688615⟩
  • Matthieu Boffety, Marc Allain, Anne Sentenac, Marc Massonneau, Rémi Carminati. Molecular imaging on small animals using reflection-mode fluorescence diffuse optical tomography. Photonics and Imaging in Biology and Medecine, 2007, Wuhan, China. ⟨hal-01688610⟩

Other publications1 document

  • P. Godard, G. Carbone, Marc Allain, F. Mastropietro, G. Chen, et al.. Three-dimensional microscopy of extended crystals through X-ray Bragg ptychography. 2013. ⟨hal-01253307⟩

Theses1 document

  • Marc Allain. Approche pénalisée en tomographie hélicoïdale en vue de l'application à la conception d'une prothèse personnalisée du genou. Interface homme-machine [cs.HC]. Université Paris Sud - Paris XI, 2002. Français. ⟨tel-00003756⟩