Nombre de documents

32

CV de Malika Smail-Tabbone


Chapitre d'ouvrage2 documents

  • Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie. Classification and Exploration of 3D Protein Domain Interactions Using Kbdock. O. Carugo; F. Eisenhaber. Data Mining Techniques for the Life Sciences, 1415, Springer Science+Business Media New York, pp.91-105, 2016, Methods in Molecular Biology, 978-1-4939-3570-3. <10.1007/978-1-4939-3572-7_5>. <hal-01317448>
  • Marie-Dominique Devignes, Malika Smaïl-Tabbone. Maîtriser les ressources numériques : biologie "in silico". Magali Roux. Biologie L'ère numérique, CNRS Editions, pp.189-222, 2009, 9782271067791. <inria-00433477>

Article dans une revue10 documents

  • Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie. Kbdock - Searching and organising the structural space of protein-protein interactions. ERCIM News, ERCIM, 2016, pp.24-25. <hal-01258117>
  • Adrien Coulet, Malika Smaïl-Tabbone. Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics. ERCIM News, ERCIM, 2016, ERCIM News 104, Special theme: Tackling Big Data in the Life Sciences, pp.56. <http://ercim-news.ercim.eu/>. <hal-01369501>
  • Anisah Ghoorah, Marie-Dominique Devignes, Seyed Alborzi, Malika Smaïl-Tabbone, David Ritchie. A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions. Biology, MDPI, 2015, 4 (2), pp.327-343. <10.3390/biology4020327>. <hal-01216748>
  • Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie. Protein Docking Using Case-Based Reasoning. Proteins - Structure, Function and Bioinformatics, Wiley, 2013, 81 (12), pp.2150-2158. <10.1002/prot.24433>. <hal-00880341>
  • Marie-Dominique Devignes, Benabderrahmane Sidahmed, Malika Smail-Tabbone, Napoli Amedeo, Poch Olivier. Functional classification of genes using semantic distance and fuzzy clustering approach: Evaluation with reference sets and overlap analysis. international Journal of Computational Biology and Drug Design. Special Issue on: "Systems Biology Approaches in Biological and Biomedical Research", Inderscience publishers, 2012, 5 (3/4), pp.245-260. <hal-00734329>
  • Leo Ghemtio, Malika Smaïl-Tabbone, Appolinaire Djikeng, Marie-Dominique Devignes, Lionel Keminse, et al.. HIV-PDI: A Protein-Drug Interaction Resource for Structural Analyses of HIV Drug Resistance: 1. Concepts and Associated Database. Journal of Health & Medical Informatics, 2011, 2 (1), pp.1000104. <10.4172/2157-7420.1000104>. <hal-00642539>
  • Anisah Ghoorah, Marie-Dominique Devignes, Malika Smaïl-Tabbone, David Ritchie. Spatial clustering of protein binding sites for template based protein docking. Bioinformatics, Oxford University Press (OUP), 2011, 27 (20), pp.2820-2827. <10.1093/bioinformatics/btr493>. <inria-00617921>
  • Marie-Dominique Devignes, Philippe Franiatte, Nizar Messai, Emmanuel Bresso, Amedeo Napoli, et al.. BioRegistry: Automatic extraction of metadata for biological database retrieval and discovery. International Journal of Metadata, Semantics and Ontologies, Inderscience, 2010, 5 (3), pp.184--193. <10.1504/IJMSO.2010.034043>. <inria-00502297>
  • Leo Ghemtio, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Michel Souchet, Vincent Leroux, et al.. Comparison of three preprocessing filters efficiency in virtual screening: identification of new putative LXRbeta regulators as a test case. Journal of Chemical Information and Modeling, American Chemical Society, 2010, 50 (5), pp.701-715. <hal-00547968>
  • Adrien Coulet, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli, Marie-Dominique Devignes. Ontology-guided data preparation for discovering genotype-phenotype relationships. BMC Bioinformatics, BioMed Central, 2008, 9 (Suppl 4), pp.S3. <inria-00338669>

Communication dans un congrès19 documents

  • Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet. Discovering ADE associations from EHRs using pattern structures and ontologies. Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States. 2016, <http://phenoday2016.bio-lark.org/>. <hal-01369448>
  • Gabin Personeni, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet. Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies. Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France. 2016, Atelier IA & Santé. <https://ia-sante-2016.sciencesconf.org/>. <hal-01391172>
  • Mehwish Alam, Melisachew Wudage Chekol, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology. DMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic. Springer, 2013. <hal-00903450>
  • Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Formal Concept Analysis Applied to Transcriptomic Data. What can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France. 2012. <hal-00760993>
  • Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone. Formal Concept Analysis Applied to Transcriptomic Data. The Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain. 2012. <hal-00761003>
  • Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère. NRPS toolbox for the discovery of new nonribosomal peptides and synthetases. François Coste et Denis Tagu. Journées Ouvertes en Biologie, l'Informatique et les Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. pp.89-93, 2012. <hal-00734312>
  • Emmanuel Bresso, Renaud Grisoni, Marie-Dominique Devignes, Amedeo Napoli, Malika Smail-Tabbone. Formal Concept Analysis for the Interpretation of Relational Learning applied on 3D Protein-Binding Sites. Ana Fred. 4th international conference on Knowledge Discovery and Information Retrieval - KDIR 2012, Oct 2012, Barcelona, Spain. 12 p., 2012. <hal-00734349>
  • Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Amedeo Napoli, Olivier Poch. Ontology-based functional classification of genes: evaluation with reference sets and overlap analysis. Zhongming Zhao. The second workshop on Integrative Data in Systems Biology held in conjunction with the IEEE BIBM 2011 conference, Nov 2011, Atlanta, United States. IEEE Computer Society, 2011. <hal-00644438>
  • Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smaïl-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, et al.. Use of domain knowledge for dimension reduction: application to mining of drug side effects. Ana Fred. International Conference on Knowledge Discovery and Information Retrieval - KDIR 2011, Oct 2011, Paris, France. INSTICC, SciTePress Digital Library, pp.8, 2011. <hal-00642520>
  • Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone. Using Domain Knowledge to Guide Lattice-based Complex Data Exploration. Helder Coelho, Rudi Studer and Michael Wooldridge. 19th European Conference on Artificial Intelligence - ECAI 2010, Aug 2010, Lisbon, Portugal. IOS press, 215, pp.847--852, 2010, Frontiers in Artificial Intelligence and Applications. <10.3233/978-1-60750-606-5-847>. <inria-00545545>
  • Sidahmed Benabderrahmane, Marie-Dominique Devignes, Malika Smaïl-Tabbone, O. Poch, Amedeo Napoli, et al.. Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.. Actes du XXVIIième congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2009, May 2009, Toulouse, France. pp.413-428, 2009. <inria-00394530>
  • Leo Ghemtio, Emmanuel Bresso, Michel Souchet, Bernard Maigret, Malika Smaïl-Tabbone, et al.. Model-driven data integration for mining protein-ligand and protein-protein interactions in a drug design context.. Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2008, Jun 2008, Lille, France. 2008. <inria-00339144>
  • Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone. Extending Attribute Dependencies for Lattice-Based Querying and Navigation. Peter W. Eklund and Ollivier Haemmerlé. 16th International Conference on Conceptual Structures - ICCS 2008, Jul 2008, Toulouse, France. Springer, 5113, pp.189-202, 2008, <10.1007/978-3-540-70596-3_13>. <inria-00338678>
  • Nizar Messai, Marie-Dominique Devignes, Amedeo Napoli, Malika Smaïl-Tabbone. Traitement d'attributs inter-dépendants pour la recherche d'information par treillis. 18es Journées Francophones d'Ingénierie des Connaissances - IC 2007, Jul 2007, Grenoble, France. Cépaduès éditions, pp.109-120, 2007. <hal-00509943>
  • Marie-Dominique Devignes, Malika Smaïl-Tabbone. Workshop PC Chairs' Message. Web Data Integration for Mining in the Life Sciences (WebDIM4LS). Mathias Weske and Mohand-Said Hacid and Claude Godart. International Workshops on Web Information Systems Engineering – WISE 2007 Workshops, Dec 2007, Nancy, France. Springer, 4832, pp.3-4, 2007, <10.1007/978-3-540-77010-7_1>. <inria-00338679>
  • Malika Smaïl-Tabbone, Shazia Osman, Nizar Messai, Amedeo Napoli, Marie-Dominique Devignes. BioRegistry : a structured metadata repository for bioinformatic databases. M.R. Berthold, R. Glen, K. Diederichs, O. Kohlbacher, I. Fisher. First International Symposium on Computational Life Science - CompLife 2005, Sep 2005, Konstanz, Germany, Springer, 3695 (3695), pp.46-56, 2005, Lecture Notes in Bioinformatics. <inria-00000418>
  • Marie-Dominique Devignes, Malika Smaïl-Tabbone. Integration of biological data from web resources : management of multiple answers through metadata retrieval. 12th International Conference on Intelligent Systems for Molecular Biology - 3rd European Conference on Computational Biology - ISMB-ECCB 2004, 2004, Glasgow, Scotland, United Kingdom. pp.3, 2004. <inria-00107769>
  • Marie-Dominique Devignes, Yvan Norsa, Malika Smaïl-Tabbone, Philippe Collet, Lionel Domenjoud, et al.. A Generic Solution for Automated Collecting and Integration of Biological Data from Web Sources. European Conference on Computational Biology - ECCB'03, Sep 2003, Paris, France. pp.2, 2003. <inria-00107665>
  • Nacer Boudjlida, Malika Smaïl-Tabbone, Marie-Dominique Devignes. Services for a Genomics Open Distributed Environment. XEWA'2000: IEEE Workshop on XML-Enabled Wide Area Search in Bioinformatics, 2000, League City, Texas, 2 p, 2000. <inria-00099248>

HDR1 document

  • Malika Smaïl-Tabbone. Contributions à l'extraction de connaissances à partir de données biologiques. Apprentissage [cs.LG]. Université de Lorraine, 2014. <tel-01093943v2>