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Mahendra Mariadassou

141
Documents

Publications

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Insight into the Role of Gut Microbiota in Duchenne Muscular Dystrophy

Maxence Jollet , Mahendra Mariadassou , Olivier Rué , Laurence Pessemesse , Vincent Ollendorff
American Journal of Pathology, 2024, 194 (2), pp.264-279. ⟨10.1016/j.ajpath.2023.10.010⟩
Article dans une revue hal-04383411v1
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Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego P. Morgavi , Lucie Rault
Animal Microbiome, 2023, 5 (1), pp.32. ⟨10.1186/s42523-023-00252-w⟩
Article dans une revue hal-04126196v1

Comparison of Fecal Sample Collection Methods for Microbial Analysis Embedded within Colorectal Cancer Screening Programs

Semi Zouiouich , Mahendra Mariadassou , Olivier Rué , Emily Vogtmann , Inge Huybrechts
Cancer Epidemiology, Biomarkers and Prevention, 2022, 31 (2), pp. 305-314. ⟨10.1158/1055-9965.EPI-21-0188⟩
Article dans une revue hal-03625845v1
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Prebiotic Supplementation During Gestation Induces a Tolerogenic Environment and a Protective Microbiota in Offspring Mitigating Food Allergy

Amandine Selle , Carole Brosseau , Wieneke Dijk , Angéline Duval , Grégory Bouchaud
Frontiers in Immunology, 2022, 12, pp.745535. ⟨10.3389/fimmu.2021.745535⟩
Article dans une revue hal-03578742v1
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Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process

Antoine Bichat , Christophe Ambroise , Mahendra Mariadassou
Computational Statistics, 2022, 37 (3), pp.995-1013. ⟨10.1007/s00180-021-01148-6⟩
Article dans une revue hal-04072108v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Article dans une revue hal-02399723v2
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Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history

Ariane Bize , Cédric Midoux , Mahendra Mariadassou , Sophie Schbath , Patrick Forterre
BMC Genomics, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩
Article dans une revue hal-03176011v1
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Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

E. Lejal , J. Chiquet , J. Aubert , S. Robin , A. Estrada-Peña
Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩
Article dans une revue hal-03287263v1
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Nitric Oxide Impacts Human Gut Microbiota Diversity and Functionalities

Marion Leclerc , Cassandre Bedu-Ferrari , Lucie Etienne-Mesmin , Mahendra Mariadassou , Lucie Lebreuilly
mSystems, 2021, 6 (5), ⟨10.1128/mSystems.00558-21⟩
Article dans une revue hal-03413913v1
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Glucose but Not Fructose Alters the Intestinal Paracellular Permeability in Association With Gut Inflammation and Dysbiosis in Mice

Magali Monnoye , Xufei Zhang , Mahendra Mariadassou , Fabienne Beguet-Crespel , Nicolas Lapaque
Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.742584⟩
Article dans une revue hal-03634400v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Article dans une revue hal-03323846v1

Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions

Franciele Pereira Camargo , Isabel Kimiko Sakamoto , Tiago Palladino Delforno , Mahendra Mariadassou , Valentin Loux
Journal of Environmental Management, 2021, 291, pp.112631. ⟨10.1016/j.jenvman.2021.112631⟩
Article dans une revue hal-03211333v1
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Does Physical Inactivity Induce Significant Changes in Human Gut Microbiota? New Answers Using the Dry Immersion Hypoactivity Model

Maxence Jollet , Kevin Nay , Angèle Chopard , Marie-Pierre Bareille , Arnaud Beck
Nutrients, 2021, 13 (11), ⟨10.3390/nu13113865⟩
Article dans une revue hal-03415988v1
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The Poisson-Lognormal Model as a Versatile Framework for the Joint Analysis of Species Abundances

Julien Chiquet , Mahendra Mariadassou , Stéphane Robin
Frontiers in Ecology and Evolution, 2021, 9, ⟨10.3389/fevo.2021.588292⟩
Article dans une revue hal-03215628v1

The Rhinobiome of Exacerbated Wheezers and Asthmatics: Insights From a German Pediatric Exacerbation Network

Malik Aydin , Cornelius Weisser , Olivier Rué , Mahendra Mariadassou , Sandra Maass
Frontiers in Allergy, 2021, 2, ⟨10.3389/falgy.2021.667562⟩
Article dans une revue hal-03244864v1
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Unraveling the history of the genus Gallus through whole genome sequencing

Mahendra Mariadassou , Marie Suez , Sanbadam Sathyakumar , Alain Vignal , Mariangela Arca
Molecular Phylogenetics and Evolution, 2021, 158, pp.107044. ⟨10.1016/j.ympev.2020.107044⟩
Article dans une revue hal-03155990v1
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Detection of selection signatures in Limousin cattle using whole‐genome resequencing

M. Mariadassou , Y. Ramayo‐caldas , M. Charles , M. Féménia , G. Renand
Animal Genetics, 2020, 51 (5), pp.815-819. ⟨10.1111/age.12982⟩
Article dans une revue hal-03285327v1

Shifts in the temperature-sensitive periods for spring phenology in European beech and pedunculate oak clones across latitudes and over recent decades.

Bénédicte Wenden , Mahendra Mariadassou , Frank-M Chmielewski , Yann Vitasse
Global Change Biology, 2020, 26, pp.1808-1819. ⟨10.1111/gcb.14918⟩
Article dans une revue hal-02622770v1
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Consistency and Asymptotic Normality of Latent Blocks Model Estimators

Vincent Brault , Christine Keribin , Mahendra Mariadassou
Electronic Journal of Statistics , 2020, 14 (1), pp.1234-1268. ⟨10.1214/20-EJS1695⟩
Article dans une revue hal-01511960v3
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Function-Driven Design of Lactic Acid Bacteria Co-cultures to Produce New Fermented Food Associating Milk and Lupin

Fanny Canon , Mahendra Mariadassou , Marie-Bernadette Maillard , Hélène Falentin , Sandrine Parayre
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.584163⟩
Article dans une revue hal-03019865v1
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Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Emilie Lejal , Agustin Estrada-Peña , Maud Marsot , Jean-Francois J.-F. Cosson , Olivier Rué
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01093⟩
Article dans une revue hal-02790980v1
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Murine genetic background overcomes gut microbiota changes to explain metabolic response to high-fat diet

Zahra Safari , Aurelia Bruneau , Magali Monnoye , Mahendra Mariadassou , Catherine Philippe
Nutrients, 2020, 12 (2), ⟨10.3390/nu12020287⟩
Article dans une revue hal-02503303v1
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First step of odorant detection in the olfactory epithelium and olfactory preferences differ according to the microbiota profile in mice

Laurent Naudon , Adrien François , Mahendra Mariadassou , Magali Monnoye , Catherine Philippe
Behavioural Brain Research, 2020, 384, ⟨10.1016/j.bbr.2020.112549⟩
Article dans une revue hal-02503302v1
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Consistency and asymptotic normality of stochastic block models estimators from sampled data

Mahendra Mariadassou , Timothée Tabouy
Electronic Journal of Statistics , 2020, 14 (2), pp.3672-3704. ⟨10.1214/20-ejs1750⟩
Article dans une revue hal-04380551v1
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SimkaMin: fast and resource frugal de novo comparative metagenomics

Gaëtan Benoit , Mahendra Mariadassou , Stéphane Robin , Sophie Schbath , Pierre Peterlongo
Bioinformatics, 2020, 36 (4), pp.1-2. ⟨10.1093/bioinformatics/btz685⟩
Article dans une revue hal-02308101v1
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A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats

Valérie Daugé , Catherine Philippe , Mahendra Mariadassou , Olivier Rué , Jean-Charles Martin
Frontiers in Behavioral Neuroscience, 2020, 14, ⟨10.3389/fnbeh.2020.581296⟩
Article dans une revue hal-03225018v1
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Incorporating Phylogenetic Information in Microbiome Differential Abundance Studies Has No Effect on Detection Power and FDR Control

Antoine Bichat , Jonathan Plassais , Christophe Ambroise , Mahendra Mariadassou
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.00649⟩
Article dans une revue hal-02635268v1
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Optimize the plant microbiota to increase plant growth and health

Matthieu Barret , P. Dufour , Mylène Durand-Tardif , Mahendra Mariadassou , Christophe Mougel
Consortium Biocontrôle et GIS Biotechnologies Vertes , 2019, ⟨10.15454/1fve-e105⟩
Article dans une revue hal-03297096v1

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater

Tiago P. Delforno , Thais Z. Macedo , Cedric Midoux , Gileno V. Lacerda , Olivier Rué
Science of the Total Environment, 2019, 2019 (649), pp.482-494. ⟨10.1016/j.scitotenv.2018.08.328⟩
Article dans une revue hal-01888286v1
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Steatosis and gut microbiota dysbiosis induced by high-fat diet are reversed by 1-week chow diet administration

Zahra Safari , Magali Monnoye , Peter M. Abuja , Mahendra Mariadassou , Karl Kashofer
Nutrients, 2019, 71, pp.72-88. ⟨10.1016/j.nutres.2019.09.004⟩
Article dans une revue hal-02503316v1

Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism

Xufei Zhang , Alexandra Grosfeld , Edek Williams , Daniel Vasiliauskas , Sharon Barretto
FASEB Journal, 2019, 33 (6), pp.7126-7142. ⟨10.1096/fj.201801526RR⟩
Article dans une revue hal-02191008v1
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Gut bacteria are critical for optimal muscle functiona potential link with glucose homeostasis

Kevin Nay , Maxence Jollet , Benedicte Goustard , Narjes Baati , Barbara Vernus
AJP - Endocrinology and Metabolism, 2019, 317 (1), pp.E158-E171. ⟨10.1152/ajpendo.00521.2018⟩
Article dans une revue hal-02152871v1
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Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale

Méryl Vila Nova , Kévin Durimel , Kévin La , Arnaud Felten , Philippe Bessieres
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6188-x⟩
Article dans une revue hal-02392205v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué
Le Cahier des Techniques de l'INRA, 2019, 2019 (97), pp.1-23
Article dans une revue hal-02311421v1
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Variational inference for probabilistic Poisson PCA

Julien Chiquet , Mahendra Mariadassou , Stephane Robin
Annals of Applied Statistics, 2018, 12 (4), pp.2674-2698. ⟨10.1214/18-AOAS1177⟩
Article dans une revue hal-01941270v1
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Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help to decipher intestinal viromes

Jeffrey K. Cornuault , Marie-Agnès Petit , Mahendra Mariadassou , Leandro Benevides , Elisabeth Moncaut
Microbiome, 2018, 6 (1), 14 p. ⟨10.1186/s40168-018-0452-1⟩
Article dans une revue hal-01774632v1
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FROGS: Find, Rapidly, OTUs with Galaxy Solution

Frédéric Escudié , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil
Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩
Article dans une revue hal-02626808v1

Inference of Adaptive Shifts for Multivariate Correlated Traits

Paul Bastide , Céline Ané , Stephane Robin , Mahendra Mariadassou
Systematic Biology, 2018, 67, ⟨10.1093/sysbio/syy005⟩
Article dans une revue hal-01608932v1

OH1 from Orf virus: a new tyrosine phosphatase that displays distinct structural features and triple substrate specificity

Danilo Segovia , Ahmed Haouz , Dario Porley , Natalia Olivero , Mariano Martinez
Journal of Molecular Biology, 2017, 26 p. ⟨10.1016/j.jmb.2017.07.017⟩
Article dans une revue hal-01602647v1
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Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study

Stéphanie-Marie Deutsch , Mahendra Mariadassou , Pierre Nicolas , Sandrine Parayre , Rozenn Le Guellec
Scientific Reports, 2017, 7, pp.46409. ⟨10.1038/srep46409⟩
Article dans une revue hal-01510019v1
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Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello
Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩
Article dans une revue hal-01509688v1

Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description

Lucas Auer , Mahendra Mariadassou , Michael O'Donohue , Christophe C. Klopp , Guillermina Hernandez-Raquet
Molecular Ecology Resources, 2017, ⟨10.1111/1755-0998.12700⟩
Article dans une revue hal-01605865v1

Detection of adaptive shifts on phylogenies by using shifted stochastic processes on a tree

Paul Bastide , Mahendra Mariadassou , Stephane Robin
Journal of the Royal Statistical Society: Series B, 2017, ⟨10.1111/rssb.12206⟩
Article dans une revue hal-01551071v1

Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota

Jeanne Alard , Véronique Lehrter , Moez Rhimi , Irène Mangin , Véronique Peucelle
Environmental Microbiology, 2016, 18 (5), pp.1484-1497. ⟨10.1111/1462-2920.13181⟩
Article dans une revue hal-03372071v1
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Olfactory epithelium changes in germfree mice

Adrien François , Denise Grebert , Moez Rhimi , Mahendra Mariadassou , Laurent Naudon
Scientific Reports, 2016, 6, pp.24687. ⟨10.1038/srep24687⟩
Article dans une revue hal-01353286v1
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Olfactory epithelium changes in germfree mice

Adrien François , Denise Grebert , Moez Rhimi , Mahendra Mariadassou , Laurent Naudon
Scientific Reports, 2016, 6 (1), ⟨10.1038/srep24687⟩
Article dans une revue hal-03371054v1
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Multiple comparative metagenomics using multiset k -mer counting

Gaëtan Benoit , Pierre Peterlongo , Mahendra Mariadassou , Erwan Drezen , Sophie Schbath
PeerJ Computer Science, 2016, 2 (14), 25 p. ⟨10.7717/peerj-cs.94⟩
Article dans une revue hal-01397150v1

The Red Queen lives: Epistasis between linked resistance loci

Cesar M. J. A. Metzger , Pepijn Luijckx , Gilberto Bento , Mahendra Mariadassou , Dieter Ebert
Evolution - International Journal of Organic Evolution, 2016, 70 (2), pp.480-487. ⟨10.1111/evo.12854⟩
Article dans une revue hal-02631286v1
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Convergence of the groups posterior distribution in latent or stochastic block models

Mahendra Mariadassou , Catherine Matias
Bernoulli, 2015, 21 (1), pp.537-573
Article dans une revue hal-00713120v2

Quantitative prediction of genome-wide resource allocation in bacteria

Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel
Metabolic Engineering, 2015, 32, pp.232-243. ⟨10.1016/j.ymben.2015.10.003⟩
Article dans une revue hal-01536511v1

Microbial ecosystems are dominated by specialist taxa.

Mahendra Mariadassou , Samuel Pichon , Dieter Ebert
Ecology Letters, 2015, 18 (9), pp.974-82. ⟨10.1111/ele.12478⟩
Article dans une revue hal-02631330v1
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Co-clustering through Latent Bloc Model: a Review

Vincent Brault , Mahendra Mariadassou
Journal de la Société Française de Statistique, 2015, 156 (3), pp.120-139
Article dans une revue hal-02088216v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
Article dans une revue hal-01142363v1
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High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation?

Anne C Roulin , Mahendra Mariadassou , Matthew D Hall , Jean-Claude Walser , Christoph Haag
Evolution - International Journal of Organic Evolution, 2015, 69 (10), pp.2747-56. ⟨10.1111/evo.12770⟩
Article dans une revue hal-02634111v1

Identification of amino acids in mitochondrially encoded proteins that correlate with lifespan.

Mahendra Mariadassou , Francois-Xavier Pellay
Experimental Gerontology, 2014, 56, pp.53-58. ⟨10.1016/j.exger.2014.03.009⟩
Article dans une revue hal-02630250v1
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Local and systemic Immune mechanisms underlying the Anti-Colitis effects of the dairy Bacterium Lactobacillus delbrueckii.

Clarissa Santos Rocha , Ana Cristina Gomes-Santos , Thais Garcias Moreira , Marcela de Azevedo , Tessalia Diniz Luerce
PLoS ONE, 2014, 9 (1), pp.1-8. ⟨10.1371/journal.pone.0085923⟩
Article dans une revue hal-01204288v1
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Analyses of the radiation of birnaviruses from diverse host phyla and of their evolutionary affinities with other double-stranded RNA and positive strand RNA viruses using robust structure-based multiple sequence alignments and advanced phylogenetic methods.

Jean-François Gibrat , Mahendra Mariadassou , Pierre Boudinot , Bernard B. Delmas
BMC Evolutionary Biology, 2013, 13, pp.3-17. ⟨10.1186/1471-2148-13-154⟩
Article dans une revue hal-02645508v1
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Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference

Mahendra Mariadassou , Avner Bar-Hen , Hirohisa Kishino
Systematic Biology, 2012, 61 (2), pp.337-345. ⟨10.1093/sysbio/syr129⟩
Article dans une revue hal-02642639v1
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Phylogenetic and complementation analysis of a single-stranded dna binding protein family from lactococcal phages indicates a non-bacterial origin

Agnieszka K. Szczepankowska , Eric Prestel , Mahendra Mariadassou , Jacek K. Bardowski , Elena Bidnenko
PLoS ONE, 2011, 6 (11), ⟨10.1371/journal.pone.0026942⟩
Article dans une revue hal-01191212v1
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Uncovering latent structure in valued graphs: a variational approach

Mahendra Mariadassou , Stephane Robin , Corinne Vacher
Annals of Applied Statistics, 2010, 4 (2), pp.715-742. ⟨10.1214/10-AOAS361⟩
Article dans une revue hal-01197514v1

Concentration inequality for evolutionary trees

Mahendra Mariadassou , Avner Bar-Hen
Journal of Multivariate Analysis, 2009, pp.2055-2064. ⟨10.1016/j.jmva.2009.02.015⟩
Article dans une revue hal-00410872v1

Influence function for robust phylogenetic reconstructions.

Avner Bar-Hen , Mahendra Mariadassou , Marie-Anne Poursat , Philippe Vandenkoornhuyse
Molecular Biology and Evolution, 2008, 25 (5), pp.869-873. ⟨10.1093/molbev/msn030⟩
Article dans une revue hal-00312860v1

Uncovering structure in biological networks

J.J. Daudin , Vincent Lacroix , M. Mariadassou , V. Miele , Franck Picard
incollection, 2006, --, pp.471-483
Article dans une revue hal-00427936v1
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Addition of dairy lipids and probiotic in infant formulas modulates gut microbiota and intestinal physiology with long-term consequences; a preclinical study in a minipig model

Marion Lemaire , Mahendra Mariadassou , Laurence Le Normand , Gwenaelle Randuineau , Véronique Rome
15. Congress of the international society for the study of fatty acids and lipids (ISSFAL), Jul 2023, Nantes, France
Communication dans un congrès hal-04155652v1

MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué
FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Communication dans un congrès hal-04221356v1

Milk microbiota: potential allies for mammary gland health

Coralie Goetz , Lucie Rault , Marion Boutinaud , Christine Citti , Hélène Falentin
ADSA annual meeting 2023, American Dairy Science Association, Jun 2023, Ottawa, Canada. pp.146
Communication dans un congrès hal-04164763v1

Origins and rate of mutations in bacteriophage Lambda

Julien Lopez , Mahendra Mariadassou , Valentin Loux , Rafael Sanjuán , Marina Elez
Phages in Lyon 2023, phages.fr, Nov 2023, Lyon, France
Communication dans un congrès hal-04321371v1

Nitric Oxide impacts human gut microbiota diversity and functionalities

Nalini Ramarao , Cassandre Bedu-Ferrari , Lucie Etienne-Mesmin , Mahendra Mariadassou , Lucie Lebreuilly
9. Microbiome and probiotics R & D and business collaboration, Oct 2021, Rotterdam, Netherlands
Communication dans un congrès hal-03739679v1
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Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Anne Plauzolles , Ghislain Bidaut
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France
Communication dans un congrès hal-03451266v1

Caractérisation et modélisation des populations de bactériophages de la croûte de fromages (type époisses) sous différentes conditions environnementales d’affinage

Stephane Chaillou , Eric Dugat-Bony , Julien Lossouarn , Marie-Agnès Petit , Mahendra Mariadassou
15. Congrès de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA., Sep 2019, Paris, France
Communication dans un congrès hal-02789388v1

Membre du comité d'organisation scientifique

Danielle Canceill , Virginie Bourion , Mahendra Mariadassou , Milka Popova , C Roger-Gaillard,
Séminaire de lancement du métaprogramme HOLOFLUX, Nov 2019, Nantes, France
Communication dans un congrès hal-03229623v1

Shifts in the temperature sensitivity periods for two forest tree species under warming climatic conditions

Bénédicte Wenden , Mahendra Mariadassou , Frank-M Chmielewski , Yann Vitasse
EGU General Assembly 2019, Apr 2019, Vienna, Austria
Communication dans un congrès hal-02790841v1
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Ecological modelling of phage, bacterial and yeast populations structure in Epoisses cheese under changing ripening conditions using factorial experimental design and metavirome analysis

Eric Dugat-Bony , Julien Lossouarn , Mahendra Mariadassou , Daniel Picque , Marie-Agnès Petit
MD 2019 : 5th International Conference on Microbial Diversity, Sep 2019, Catania, Italy
Communication dans un congrès hal-04416628v1

Variational Inference for sparse network reconstruction from count data

Julien Chiquet , Mahendra Mariadassou , Stephane Robin
ICML 2019 International Conference on Machine Learning, Jun 2019, Long Beach, United States
Communication dans un congrès hal-02735800v1

A Walk Along Models for Count Data in Microbial Ecology

Mahendra Mariadassou , Julien Chiquet , Stéphane Robin
Recent Computational Advances in Metagenomics (RCAM) 2018, Sep 2018, Athènes, Greece
Communication dans un congrès hal-04382269v1

Is skeletal muscle remodeling associated with gut microbiota signature?

Maxence Jollet , Barbara Vernus , Anne Bonnieu , Mahendra Mariadassou , Olivier Rué
6th World Congress on Targeting Microbiota, Oct 2018, Porto, Portugal. pp.1
Communication dans un congrès hal-02736948v1
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A metagenomic tool for cheese ecosystems

Anne-Laure Abraham , Quentin Cavaillé , Thibaut Guirimand , Pierre Renault , Sandra Derozier
17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece
Communication dans un congrès hal-02789036v1
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Sweet cherry phenology in the context of climate change: a systems biology approach

Bénédicte Wenden , Mahendra Mariadassou
COST Cherry FA1104 Working Group 2 Cherry Phenology, Modelling and Climate Change, International Society for Horticultural Science (ISHS). INT., 2017, Ullensvang, Norway. ⟨10.17660/ActaHortic.2017.1162.6⟩
Communication dans un congrès hal-02736013v1
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Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystems

Thibaut Guirimand , Anne-Laure Abraham , Sandra Derozier , Charlie Pauvert , Mahendra Mariadassou
JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France
Communication dans un congrès hal-02788899v1

FORTRESS : Impact of microbial diversity on the barrier effect against an exogenous species

Eric Dugat-Bony , Philippine de Barbeyrac , Mahendra Mariadassou , Cecile Callon , Pascal Bonnarme
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Communication dans un congrès hal-01608159v1

Genomics of Chicken Domestication

Mahendra Mariadassou , Marie Suez , Pierre Nicolas , Diane Esquerré , Alain Vignal
10. European Symposium on Poultry Genetics, Jun 2017, Saint Malo, France
Communication dans un congrès hal-02785437v1
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Équivalence asymptotique des vraisemblances observée et complète dans le modèle de blocs latents

Vincent Brault , Christine Keribin , Mahendra Mariadassou
XXIV èmes Rencontres de la Société Francophone de Classification, Société Francophone de Classification, Jun 2017, Lyon, France
Communication dans un congrès hal-01510994v1
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Statistical analysis of trends in sweet cherry flowering data across Europe

Bénédicte Wenden , Mahendra Mariadassou , José Antonio Campoy , José Quero-Garcia , Elisabeth Dirlewanger
10. International Symposium on Modelling in Fruit Research and Orchard Management, 2017, Leuven, Belgium. ⟨10.17660/ActaHortic.2017.1160.31⟩
Communication dans un congrès hal-02737108v1

Flowering time response to temperature in sweet cherry across Europe: multi-cultivar and multi-environment analysis

Bénédicte B. Wenden , Mahendra Mariadassou , José Antonio Campoy , José Quero-Garcia , Elisabeth Dirlewanger
8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France
Communication dans un congrès hal-02740156v1

Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems

Marianne de Paepe , Eric Dugat-Bony , Jérôme Hamelin , Mahendra Mariadassou , Kim Milferstedt
Phages On Marseille, Nov 2016, Marseille, France. pp.1
Communication dans un congrès hal-01531724v1
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Normalité asymptotique de l’estimateur du maximum de vraisemblance dans le modèle de blocs latents

Mahendra Mariadassou , Vincent Brault , Christine Keribin
48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Communication dans un congrès hal-01440084v1
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Quantitative prediction of genome-wide resource allocation in bacteria

Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel
ISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany
Communication dans un congrès hal-02798691v1

Statistical analysis of trends in Sweet Cherry flowering data across Europe

Bénédicte B. Wenden , Mahendra Mariadassou , José Antonio Campoy , José Quero-Garcia , Elisabeth Dirlewanger
10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France
Communication dans un congrès hal-02793616v1

Find Rapidly OTU with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Communication dans un congrès hal-01535378v1

Analyse statistique de données multisites de floraison pour le cerisier doux

Bénédicte B. Wenden , Mahendra Mariadassou , José Antonio Campoy , José Quero-Garcia , Elisabeth Dirlewanger
Colloque Francophone Phénologie, Nov 2015, Clermont Ferrand, France
Communication dans un congrès hal-02744122v1

Dominant Species are Specialists

Mahendra Mariadassou
ECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gôteborg, Sweden. pp.1
Communication dans un congrès hal-02793165v1
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The specificity - abundance relationship in microbial communities

Mahendra Mariadassou , Dieter Ebert , Samuel Pichon
ECMTB14 - European Conference on Mathematical and Theoretical Biology, Jun 2014, Gothenburg, Sweden. pp.1
Communication dans un congrès hal-02798419v1
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Influence function for robust phylogenetic reconstruction

Mahendra Mariadassou , Avner A. Bar-Hen
JOBIM 2011, Jun 2011, Paris, France. pp.422
Communication dans un congrès hal-02746361v1
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Uncovering latent structure in valued graphs: a variational approach

Mahendra Mariadassou , Stephane S. Robin , Corinne C. Vacher
Probability and Discrete Mathematics in Mathematical Biology, May 2011, Singapore, Singapore. 47 diapos
Communication dans un congrès hal-02802815v1
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Fonction d'influence pour la reconstruction de phylogénies robustes

Mahendra Mariadassou , Avner Bar-Hen
42èmes Journées de Statistique, 2010, Marseille, France. pp.USB-key
Communication dans un congrès inria-00494834v1

Exploration of dairy cow holobiont revealed an important sharing of microbes between anatomic sites within individual hosts throughout lactation but sharing was limited in the herd

Mahendra Mariadassou , Laurent-Xavier Nouvel , Fabienne Constant , Diego Morgavi , Lucie Rault
https://www.adsa.org/Meetings/2023-Annual-Meeting. ADSA annual meeting 2023, Jun 2023, Ottawa, Canada. , 2023
Poster de conférence hal-04164713v1

Microbial transfers across a food chain: from grassland to cheese using metagenetic high-throughput sequencing approaches

Anne-Laure Abraham , Juliette Bloor , Céline Delbès , Annick Bernalier Donadille , Matthieu Bouchon
FORUM ON FERMENTED FOODS, May 2023, Lyon, France
Poster de conférence hal-04221437v1
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Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics

Vuong Quoc Hoang Ngo , François Enault , Cédric Midoux , Mahendra Mariadassou , Olivier Chapleur
ISME18, 18th International Symposium on Microbial Ecology, Aug 2022, Lausanne, Switzerland.
Poster de conférence hal-04359643v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2022, Rennes, France. 2022
Poster de conférence hal-04176761v1

Combining marker genes in amplicon sequencing: a novel approach enhancing taxonomic profiling of microbial ecosystems

Benoît Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Marion Bonnet , Anne Plauzolles
3rd International Conference on Holobionts, Jul 2022, Lyon, France. 2022
Poster de conférence hal-04176902v1
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New insights into cow holobiont in relation to heath

Sergine Even , Mahendra Mariadassou , Xavier Nouvel , Fabienne F. Constant , Diego Morgavi
16e congres national de la SFM-MICROBES 2021, Sep 2021, Nantes, France
Poster de conférence hal-03361039v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Hélène Chiapello , Christelle Hennequet-Antier , Valentin Loux , Mahendra Mariadassou
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2021, Paris, France. 2021
Poster de conférence hal-04176768v1
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A bioinformatic pipeline to elucidate the links between viruses and their hosts in microbial communities, applied to viruses in anaerobic digestion processes

Vuong Quoc Hoang Ngo , Cédric Midoux , Mahendra Mariadassou , Valentin Loux , François Enault
JOBIM 2021 (JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France.
Poster de conférence hal-04359920v1

New insights into cow holobiont in relation to health

Mahendra Mariadassou , Laurent-Xavier Nouvel , Diego Morgavi , Lucie Rault , Sophie Schbath
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. , 2020
Poster de conférence hal-02962468v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Poster de conférence hal-04176782v1
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Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?

Benoit Goutorbe , Anne-Laure Abraham , Mahendra Mariadassou , Valentin Loux , Olivier Rué
JOBIM, Jun 2020, Montpellier, France.
Poster de conférence hal-03451271v1
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A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste

Cedric Midoux , Franciele Camargo , Olivier Rué , Mahendra Mariadassou , Valentin Loux
JOBIM, Jun 2020, Montpellier, France
Poster de conférence hal-02902758v1
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Plateforme bioinformatique MIGALE

Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Poster de conférence hal-04176805v1
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Detection of an archaeal-specific viral family, previously thought to infect exclusively hyperthermophiles, in human gut metaviromes

Vuong Quoc Hoang Ngo , Cédric Midoux , Olivier Rué , Mahendra Mariadassou , Violette Da Cunha
Phages in Grenoble, Oct 2019, Grenoble, France.
Poster de conférence hal-04360160v1
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Mining anaerobic digestion data with Deep-omics, a new digital environmental engineering platform for omics data

Cédric Midoux , Guillaume Perréal , Marion Predhumeau , Olivier Rué , Yannick Fayolle
AD16 (16th IWA World Conference on Anaerobic Digestion), Jun 2019, Delft, Netherlands
Poster de conférence hal-04361137v1
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Feedback on a c omparative metatranscriptomic analysis

Cedric Midoux , Tiago P. Delforno , Thais Z. Macedo , Gileno V. Lacerda , Olivier Rué
JOBIM 2019 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. , 2019, JOBIM 2019
Poster de conférence hal-02735859v1

New insights into cow holobiont in relation to health

Laurent-Xavier Nouvel , Diego Morgavi , Lucie Rault , Mahendra Mariadassou , Sophie Schbath
Pathobiome 2018 "Pathogens in Microbiotas in Hosts", Jan 2018, Ajaccio, France
Poster de conférence hal-03299131v1

Design de communautés bactériennes pour fermenter un nouvel aliment associant lait et légumineuse

Valérie Gagnaire , Fanny Canon , Mahendra Mariadassou , Hélène Falentin , Sandrine Parayre
RFL2, 2e Rencontres Francophones sur les Légumineuses, Oct 2018, Toulouse, France. , 2018
Poster de conférence hal-01902837v1
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Easy16S : a user-friendly Shiny interface for analysis and visualization of metagenomic data

Cedric Midoux , Olivier Rué , Olivier Chapleur , Mahendra Mariadassou , Théodore Bouchez
JOBIM 2018 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. , 2018, JOBIM 2018
Poster de conférence hal-02737257v1
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Comparison of statistical methods of inference of cooccurrence networks within micro- bial ecosystems from metagenomics data

Sophie Schbath , Mahendra Mariadassou , Julie Lao
JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017
Poster de conférence hal-01563604v1

Simka: large scale de novo comparative metagenomics

Gaëtan Benoit , Pierre Peterlongo , Mahendra Mariadassou , Erwan Drezen , Sophie Schbath
JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. , pp.234, 2017, JOBIM 2017 LILLE
Poster de conférence hal-01595071v1

Design of bacterial consortia for fermentation of novel food mixing milk and lupin flour

Fanny Canon , Mahendra Mariadassou , Hélène Falentin , Sandrine Parayre , Marie-Bernadette Maillard
4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. 2017
Poster de conférence hal-01628088v1
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Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.

Thibaut Guirimand , Charlie Pauvert , Sandra Derozier , Anne-Laure Abraham , Mahendra Mariadassou
JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 2016
Poster de conférence hal-01512085v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Hélène Chiapello , Amal Hammami
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015
Poster de conférence hal-01170054v1

Approche génomique de la domestication du poulet

Michèle Tixier-Boichard , Mahendra Mariadassou , Xavier X Rognon , Pierre Nicolas , Francois Rodolphe
11. Journées de la Recherches Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. , 2015, Onzièmes Journées de la Recherche Avicole et Palmipèdes à Foie Gras
Poster de conférence hal-01535349v1
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FROGS : Find Rapidly OTUs with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal
Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Poster de conférence hal-01886389v1

Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approach

Charlie Pauvert , Anne-Laure Abraham , Mathieu Almeida , Nicolas Pons , Mahendra Mariadassou
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.1, 2015
Poster de conférence hal-01204484v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Helene Chiapello , Amal Hammami
JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩
Poster de conférence hal-01209851v1

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbes , Eric Dugat-Bony
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Poster de conférence hal-01195512v1
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Insight in the genetic diversity of wild and domestic [i]Gallus[/i]

Mahendra Mariadassou , Bertrand Bed'Hom , Pierre Nicolas , Jean-Luc Coville , Félicie Lahalle-Faucon
14. European Poultry Conference, Jun 2014, Stavanger, Norway. 2014
Poster de conférence hal-01193928v1

Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of[i] Propionibacterium freudenreichii[/i]

Caroline Le Maréchal , Mahendra Mariadassou , Valentin Loux , Amal Plaudet Hammani , Julien Buratti
Journées ouvertes en biologie informatique mathématiques, Jul 2012, Rennes, France. , 2012
Poster de conférence hal-01209420v1

Combination of in silico and proteomic approaches to identify candidate genes responsible for the immunomodulatory properties of Propionibacterium freudenreichii

Caroline Le Maréchal , Mahendra Mariadassou , Valentin Loux , Amal Plaudet Hammani , Julien Buratti
Journées des Microbiologistes de l'INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. 2012
Poster de conférence hal-01209410v1
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Le modèle Poisson log-normal pour l’analyse de distributions jointes d’abondance

Julien Chiquet , Marie-Josée Cros , Mahendra Mariadassou , Nathalie Peyrard , Stéphane Robin
Nathalie Peyrard; Olivier Gimenez. Approches statistiques pour les variables cachées en écologie, ISTE Éditions, 2022, 9781789480474
Chapitre d'ouvrage hal-04033421v1

Tree Evaluation and Robustness Testing

Mahendra Mariadassou , Avner Bar-Hen , Hirohisa Kishino
Encyclopedia of Bioinformatics and Computational Biology, 2, Elsevier, pp.736-745, 2019, ⟨10.1016/B978-0-12-809633-8.20259-8⟩
Chapitre d'ouvrage hal-02484863v1
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Robustess of Phylogenetic Trees

Mahendra Mariadassou
Mathematics [math]. Université Paris Sud - Paris XI, 2009. English. ⟨NNT : ⟩
Thèse tel-00472052v1
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FROGS Training on Galaxy : Statistics to Explore Metagenomics

Maria Bernard , Géraldine Pascal , Mahendra Mariadassou , Laurent Cauquil , Stephane Chaillou
Training on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p
Cours hal-02788316v1
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FROGS Training on Galaxy : Metagenomics November 2017

Frédéric Escudié , Lucas Auer , Maria Bernard , Laurent Cauquil , Sarah Maman
Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Cours hal-02791696v1