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ELA/APELA precursor cleaved by furin displays tumor suppressor function in renal cell carcinoma through mTORC1 activation

 Fabienne Soulet , Clément Bodineau , Katarzyna Hooks B. , Jean Descarpentrie , Isabel D. Alves , et al.
JCI Insight, 2020, 5 (14), ⟨10.1172/jci.insight.129070⟩
Article dans une revue hal-03084443v1

Reconstruction and visualization of genome rearrangements within the Kuyveromyces

 Géraldine Jean , David James Sherman , Macha Nikolski
ESF-EMBO Symposium on Comparative Genomics of Eukaryotic Microorganisms, Oct 2007, San Feliu de Guixols, Spain. pp.44
Communication dans un congrès inria-00350567v1

A Peptide Targeting Inflammatory CNS Lesions in the EAE Rat Model of Multiple Sclerosis

 Claudine Boiziau , Macha Nikolski , Elodie Mordelet , Justine Aussudre , Karina Vargas-Sanchez , et al.
Inflammation, 2018, ⟨10.1007/s10753-018-0748-0⟩
Article dans une revue hal-01727277v1

Clinical and genomic analysis of a randomised phase II study evaluating anastrozole and fulvestrant in postmenopausal patients treated for large operable or locally advanced hormone-receptor-positive breast cancer.

 Nathalie Quenel-Tueux , Marc Debled , Justine Rudewicz , Gaetan Macgrogan , Marina Pulido , et al.
British Journal of Cancer, 2015, pp.bjc.2015.247. ⟨10.1038/bjc.2015.247⟩
Article dans une revue hal-01180992v1
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Finishing bacterial genome assemblies with Mix

 Hayssam Soueidan , Florence Maurier , Alexis Groppi , Pascal P. Sirand-Pugnet , Florence Tardy , et al.
11. Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics, Institut National de Recherche en Informatique et en Automatique (INRIA). FRA., Oct 2013, Lyon, France. ⟨10.1186/1471-2105-14-S15-S16⟩
Communication dans un congrès hal-02749841v1
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XEML Interactive designer

 Benjamin Dartigues , Kenny Biliau , Cécile Cabasson , Yves Gibon , Joachim Kopka , et al.
Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France. , 1 p., 2014
Poster de conférence hal-01203290v1

Family relationships: should consensus reign?- consensus clustering for protein families

 Macha Nikolski , David James Sherman
Bioinformatics, 2007, 23, pp.e71--e76. ⟨10.1093/bioinformatics/btl314⟩
Article dans une revue inria-00202434v1

BioRica: A multi model description and simulation system

 Hayssam Soueidan , David James Sherman , Macha Nikolski
F0SBE, 2007, Germany. pp.279-287
Communication dans un congrès hal-00306550v1

Gene Fusion and Fission Events in Fungal Genomes

 Pascal Durrens , Macha Nikolski , David James Sherman
XXIIIrd International Conference on Yeast Genetics and Molecular Biology, Jul 2007, Melbourne, Australia. pp.S132
Communication dans un congrès inria-00352592v1

Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.

 David James Sherman , Tiphaine Martin , Macha Nikolski , Cyril Cayla , Jean-Luc Souciet , et al.
Nucleic Acids Research, 2009, 37, pp.D550-D554. ⟨10.1093/nar/gkn859⟩
Article dans une revue inria-00341578v1

Linking health and administrative data for maternal, child and young adult health

 Anita Burgun , Dina V Oksen , Wolfgang Kuchinke , Hans-Ulrich Prokosch , Thomas Ganslandt , et al.
9. European Public Health Conference, Nov 2016, Vienne, Austria. ⟨10.1093/eurpub/ckw168.038⟩
Communication dans un congrès hal-01861720v1
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Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).

 Anita Burgun , Dina V Oksen , Wolfgang Kuchinke , Hans-Ulrich Prokosch , Thomas Ganslandt , et al.
Studies in Health Technology and Informatics, 2015, 216, pp.1005. ⟨10.3233/978-1-61499-564-7-1005⟩
Article dans une revue hal-01232643v1
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Genetic and epigenetic interplay allows rapid transgenerational adaptation to metal pollution in zebrafish

 Fabien Pierron , Débora Heroin , Guillemine Daffe , Flore Daramy , Aurélien Barré , et al.
Environmental Epigenetics, 2022, 8 (1), ⟨10.1093/eep/dvac022⟩
Article dans une revue hal-04065814v1

ProViz: protein interaction visualization and exploration

 Florian Iragne , Macha Nikolski , Bertrand Mathieu , David Auber , David James Sherman
Bioinformatics, 2005, 21 (2), pp.272-274. ⟨10.1093/bioinformatics/bth494⟩
Article dans une revue inria-00202436v1

Annotation transfer based on orthology relationships: reannotation of mycoplasma genomes from the Pneumoniae group

 Aurélien Barré , Vincent Jouffe , Macha Nikolski , Antoine de Daruvar , Alain Blanchard , et al.
JOBIM, Jul 2006, Bordeaux, France
Communication dans un congrès inria-00407480v1

Protein families within Hemiascomycetes

 Macha Nikolski
Yeast Genome 10th Anniversary, Académie Royale des Sciences, des Letters et des Beaux-Arts de Belgique, Sep 2006, Brussels, Belgium
Communication dans un congrès inria-00407496v1

Mining the semantics of of genome super-blocks

 Macha Nikolski
3rd Workshop on Algorithms in bioinformatics, Oct 2008, Moscow, Russia
Communication dans un congrès inria-00350572v1

Mining the semantics of genome super-blocks to infer ancestral architectures

 Géraldine Jean , David James Sherman , Macha Nikolski
Journal of Computational Biology, 2009, 16 (9), pp.1267-1284. ⟨10.1089/cmb.2008.0046⟩
Article dans une revue inria-00414692v1
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Spectral Clustering on Neighborhood Kernels with Modified Symmetry for Remote Homology Detection

 Anasua Sarkar , Macha Nikolski , Ujjwal Maulik
International Conference on Emerging Applications of Information Technology, Feb 2011, India. pp.269-272, ⟨10.1109/EAIT.2011.81⟩
Communication dans un congrès hal-00738255v1

The family based variability in protein family expansion.

 Anasua Sarkar , Macha Nikolski , Pascal Durrens
International Journal of Bioinformatics Research and Applications, 2013, 9 (2), pp.121-33. ⟨10.1504/IJBRA.2013.052473⟩
Article dans une revue hal-00857374v1

Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.

 David Sherman , Pascal Durrens , Emmanuelle Beyne , Macha Nikolski , Jean-Luc Souciet
Nucleic Acids Research, 2004, 32 (Database issue), pp.D315-8. ⟨10.1093/nar/gkh091⟩
Article dans une revue inria-00407519v1
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Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

 Reza Salek , Steffen Neumann , Daniel Schober , Jan Hummel , Kenny Billiau , et al.
Metabolomics, 2015, 11 (6), pp.1598-1599. ⟨10.1007/s11306-015-0822-7⟩
Article dans une revue hal-02630736v1

MetaboLights: Metabolomics data repository and the role of COSMOS

 Reza M. Salek , Kenneth Haug , Pablo Conesa , Mark Williams , Steffen Neumann , et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence hal-02800369v1

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant 1H-NMR metabolomic profiles

 H. Ferry-Dumazet , L. Gil , C. Deborde , Annick Moing , Stéphane Bernillon , et al.
BMC Plant Biology, 2011, 11:104, pp.10.1186/1471-2229-11-104
Article dans une revue hal-00648167v1

Saccharomyces Siliceus

 Macha Nikolski , Pascal Ferraro , Pascal Durrens , Michel Aigle
First International Workshop on Systems Biology of Yeast, Nov 2003, United States. pp.électronique
Communication dans un congrès hal-00307128v1

Gene fusion and fission events in fungus genomes

 Pascal Durrens , Macha Nikolski , David James Sherman
23rd international conference on yeast genetics and molecular biology, Jul 2007, Melbourne, Australia. pp.S132
Communication dans un congrès inria-00402220v1
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An Efficient Probabilistic Population-Based Descent for the Median Genome Problem

 Adrien Goëffon , Macha Nikolski , David James Sherman
GECCO: Genetic And Evolutionary Computation Conference, Aug 2008, Atlanta, United States. pp.315-322
Communication dans un congrès hal-00341672v1

Experimental and computational modeling for signature and biomarker discovery of renal cell carcinoma progression

 Lindsay Cooley , Justine Rudewicz , Wilfried Souleyreau , Andrea Emanuelli , Arturo Alvarez-Arenas , et al.
Molecular Cancer, 2021, 20 (1), ⟨10.1186/s12943-021-01416-5⟩
Article dans une revue hal-03390517v1

Consensus clustering for protein families

 Macha Nikolski
2006
Autre publication scientifique inria-00407494v1

Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures

 Anaïs Soula , Mélissa Valere , María-José López-González , Vicky Ury-Thiery , Alexis Groppi , et al.
Life Science Alliance, 2018, 1 (5), pp.e201800018
Article dans une revue hal-01944573v1
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