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A retrospective and regional approach assessing the genomic diversity of Salmonella Dublin

 Madeleine de Sousa Violante , Gaëtan Podeur , Valérie Michel , Laurent Guillier , Nicolas Radomski , et al.
NAR Genomics and Bioinformatics, 2022, 4 (3), pp.lqac047. ⟨10.1093/nargab/lqac047⟩
Article dans une revue anses-03767215v1
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Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation

 Florence Levillain , Yannick Poquet , Ludovic Mallet , Serge Mazeres , Michael Marceau , et al.
PLoS Pathogens, 2017, 13 (11), pp.e1006752. ⟨10.1371/journal.ppat.1006752⟩
Article dans une revue hal-01708481v1
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Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium

 Helit Cohen , Claire Hoede , Felix Scharte , Charles Coluzzi , Emiliano Cohen , et al.
PLoS Pathogens, 2022, 18 (4), 35 p. ⟨10.1371/journal.ppat.1010425⟩
Article dans une revue hal-03690615v1
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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

 Franck Cerutti , Ludovic Mallet , Anaïs Painset , Claire Hoede , Annick Moisan , et al.
BMC Genomics, 2017, 18 (1), pp.882. ⟨10.1186/s12864-017-4242-0⟩
Article dans une revue pasteur-01740259v1
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Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants

 Elisabeth E. Fournier , E E. Ortega-Abboud , Ludovic L. Mallet , Helene H. Chiapello , Cyprien C. Guerin , et al.
27th Fungal Genetics Conference, Mar 2013, Asilomar, United States. pp.281
Communication dans un congrès hal-01001508v1
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Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus.

 Ludovic Mallet , Jennifer Becq , Patrick Deschavanne
BMC Genomics, 2010, 11 (1), pp.171. ⟨10.1186/1471-2164-11-171⟩
Article dans une revue inserm-00663768v1
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Genome evolution of fungal pathoens from Magnaporthe oryzae/grisea clade

 Marc-Henri M.-H. Lebrun , Ludovic Mallet , Cyprien Guerin , Hélène Chiapello , Enrique Ortega-Abboud , et al.
XV International congress on Molecular plant-microbe interactions, 29 juillet au 02 août 2012,, Jul 2012, Kyoto, Japan. , 2012, Poster session 21 - Structural biology
Poster de conférence hal-02748600v1
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A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations

 Nicolas Radomski , Sabrina Cadel-Six , Emeline Cherchame , Arnaud Felten , Pauline Barbet , et al.
Frontiers in Microbiology, 2019, 10, pp.2413. ⟨10.3389/fmicb.2019.02413⟩
Article dans une revue pasteur-02481757v1

Comparative analysis of transposable elements in the Magnaporthe oryzae/grisea clade

 Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc Henri Lebrun , Elisabeth Fournier , et al.
PAG - Plant Animal Genome,, Jan 2013, San Diego, United States. 2013
Poster de conférence hal-01190539v1

Dyrk1a activates antioxidant NQO1 expression through an ERK1/2-Nrf2 dependent mechanism

 Christophe Noll , Asma Tlili , Clémentine Ripoll , Ludovic Mallet , Jean-Louis Paul , et al.
Molecular Genetics and Metabolism, 2012, 105 (3), pp.484 - 488. ⟨10.1016/j.ymgme.2011.11.194⟩
Article dans une revue istex hal-02647407v1
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Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants

 Helene Chiapello , Ludovic Mallet , Cyprien Guerin , Gabriela Aguileta , Joelle J. Amselem , et al.
Genome Biology and Evolution, 2015, 7 (10), pp.2896-2912. ⟨10.1093/gbe/evv187⟩
Article dans une revue hal-01222884v2

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

 Ludovic Mallet , Tristan Bitard-Feildel , Franck Cerutti , Hélène Chiapello
Bioinformatics, 2017, 33 (20), pp.3283 - 3285. ⟨10.1093/bioinformatics/btx396⟩
Article dans une revue hal-02625602v1
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Distribution and evolution of transposable elements in the Magnaporthe oryzae/grisea clade

 Joelle J. Amselem , Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc-Henri Lebrun , et al.
27. Fungal Genetics Conference, Mar 2013, Asilomar Conference Grounds, United States. 2013
Poster de conférence hal-01190331v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

 Cyprien Guerin Guérin , Ludovic Mallet Mallet , Jonathan J. Kreplak , Joelle J. Amselem , Elisabeth E. Fournier , et al.
Conférence EMBO, Nov 2011, Sant Feliu de Guixols, Spain. pp.1
Communication dans un congrès hal-01000676v1
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Host tropism and host-pathogen interplay of typhoidal Salmonella enterica

 Ludovic Mallet , Claire Hoede , Franck Cerruti , Annick Moisan , Christine Gaspin , et al.
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. , 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017
Poster de conférence hal-01603254v1

Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

 Federica Palma , Thomas Brauge , Nicolas Radomski , Ludovic Mallet , Arnaud Felten , et al.
BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-6544-x⟩
Article dans une revue hal-02913857v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

 Ludovic Mallet Mallet , Cyprien C. Guerin , Veronique V. Martin , Enrique E. Ortega-Abboud , Jonathan J. Kreplak , et al.
JOBIM-Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.379-380
Communication dans un congrès hal-01000934v1
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A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches

 Benjamin Félix , Yann Sevellec , Federica Palma , Pierre Emmanuel Douarre , Arnaud Felten , et al.
Scientific Data , 2022, 9 (1), pp.190. ⟨10.1038/s41597-022-01278-6⟩
Article dans une revue anses-03665051v1
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GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe

 E. Ortega-Abboud , Ludovic Mallet , Cyprien Guerin , Jonathan Kreplak , Joelle J. Amselem , et al.
9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.82-82
Communication dans un congrès hal-01019005v1
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The GEMO project: Hitchhiking DNA in Magnaporthe oryzae

 Ludovic Mallet , Cyprien Guerin Guérin , Joelle J. Amselem , Elisabeth E. Fournier , Helene H. Chiapello
JOBIM 2015. Meeting of working Group Medicago sativa, Jul 2015, Clermont-Ferrand, France. , 1123 p., 2015
Poster de conférence hal-02801084v1
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Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade.

 Helene H. Chiapello , Ludovic Mallet Mallet , Cyprien C. Guerin , Gabriella G. Aguileta , Francois F. Rodolphe , et al.
27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. p.76
Communication dans un congrès hal-01001510v1
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